Re: [Bioc-devel] Stackoverflow Bounty: pkgdown R package build_site function causes dependent packages unable to be loaded

Hi Marcin, You posted this 7 months ago, it has been viewed 100 times, and nobody commented or tried to answer. I don't know if a bounty is going to help though. To me, a much more effective way to get people help you is by providing enough information so that people can easily reproduce the

Re: [Rd] New leap second end of 2016 / beginning 2017 (depending on TZ)

> Martin Maechler > on Wed, 14 Dec 2016 17:04:22 +0100 writes: > As R is sophisticated enough to track leap seconds, > ?.leap.seconds > we'd need to update our codes real soon now again: > https://en.wikipedia.org/wiki/Leap_second >

[Rd] print.POSIXct doesn't seem to use tz argument, as per its example

On the documentation page for DateTimeClasses, in the Examples section, there are the following two lines: format(.leap.seconds) # the leap seconds in your time zone print(.leap.seconds, tz = "PST8PDT") # and in Seattle's The second line (using print) seems to ignore the tz argument,

Re: [Rd] Parallel compression support for saving to rds/rdata files?

> On Dec 15, 2016, at 12:08 AM, Kenny Bell wrote: > > Hi, > > I have tried to follow the instructions in the ``save`` documentation and > it doesn't seem to work (see below): > > mydata <- do.call(rbind, rep(iris, 1)) > con <- pipe("pigz -p8 > fname.gz", "wb"); >

Re: [Bioc-devel] .git folders in the repository

Hi, I am the author of the package 'anamiR'. It might be a mistake I made when I was learning how to use git-SVN. I think I have corrected it. Many thanks, Ti-Tai Wang 從: Bioc-devel [bioc-devel-boun...@r-project.org] 代表 Wolfgang Huber

[Bioc-devel] Stackoverflow Bounty: pkgdown R package build_site function causes dependent packages unable to be loaded

I am trying to build a pkgdown documentation for Bioconductor package. I have wrote about it on the stackoverflow http://stackoverflow.com/questions/36874972/pkgdown-r-package-build-site-function-causes-dependent-packages-unable-to-be-loa but the question didn't receivew the expected attention. I

Re: [Bioc-devel] Quick question about result of R CMD check and R CMD BiocCheck

$error [1] "At least 80% of man pages documenting exported objects must have runnable examples. The following pages do not:" This ERROR occurs when man pages are included without runnable examples. You have examples in it looks like 5/12 of your man pages (~42%). We encourage 80% $warning [1]

[Bioc-devel] Quick question about result of R CMD check and R CMD BiocCheck

Dear BiocDevel : I got confused about the message from R CMD BiocCheck, and R CMD check on my packages. Precisely speaking, R CMD check throws an error that my unit test is failed, zero warning, 2 notes; instead R CMD BiocCheck complain with one error that no runnable example found, one warning

[Rd] Parallel compression support for saving to rds/rdata files?

Hi, I have tried to follow the instructions in the ``save`` documentation and it doesn't seem to work (see below): mydata <- do.call(rbind, rep(iris, 1)) con <- pipe("pigz -p8 > fname.gz", "wb"); save(mydata, file = con); close(con) # This runs R.utils::gunzip("fname.gz", "fname.RData",

[Bioc-devel] .git folders in the repository

Today I get, after “svn up" whuber@boltzmann:~/madman/Rpacks$ find . -name .git -exec du -sh {} \; 17M./anamiR/anamiR/.git 56K./RareVariantVis/.git Probably the “.git" folders should not be checked in? Best wishes Wolfgang ___