> think Ivan's solution is an excellent one and can be extended to other
> scenarios.
>
> Best,
>
> Zhu
>
> On May 11, 2019, at 9:48 AM, Michael Weylandt
> wrote:
>
> On Sat, May 11, 2019 at 8:28 AM Wang, Zhu wrote:
>>
>>
>> I am open to whatever sugge
On Sat, May 11, 2019 at 8:28 AM Wang, Zhu wrote:
>
> I am open to whatever suggestions but I am not aware a simple closed-form
> solution for my original question.
>
>
It would help if you could clarify your original question a bit more, but
for at least the main three GLMs, there are closed
This is very cool, but I wonder if it isn't over-kill for the larger
problem.
In general, calculating the coefficient of an intercept-only GLM is just
calculating (a transformation of) the MLE of a univariate exponential
family distribution. (Things may be a bit trickier if the GLM also involves
Hi Dennis,
I
On Thu, Apr 25, 2019 at 9:00 AM Dennis Boos wrote:
>
> R Package Folks,
>
> The automatic checks rejected my package submission. A year ago, I got
> past the automatic checks, but a CRAN person told me to add a doi and
> use \donttest{}.
>
> 1. So I added the doi to the DESCRIPTION
Doesn't the byte-compiler inline calls like nchar() to call the .Internal
directly for certain optimization levels? If the 'internal' signature changed
in a point release, I'd expect an issue like the below. (I'm pretty sure CRAN
packages are byte-compiled at build-time, but don't use Windows
On Feb 25, 2015, at 5:35 PM, Benjamin Tyner bty...@gmail.com wrote:
Actually, it depends on the number of cores:
Under current semantics, yes. Each 'stream' of function calls is lazily
capturing the last value of `i` on that core.
Under Luke's proposed semantics (IIUC),
the result would
On Feb 24, 2015, at 10:50 AM, luke-tier...@uiowa.edu wrote:
The documentation is not specific enough on the indented semantics in
this situation to consider this a bug. The original R-level
implementation of lapply was
lapply - function(X, FUN, ...) {
FUN - match.fun(FUN)
On Jul 7, 2014, at 4:34 PM, Zhiyuan Dong zhiyuan.d...@gmail.com wrote:
Hi, I am learning R by reading R source code. Here is one question I have
about the optim function in R.
The context : In the optim.R, after all the prep steps, the main function
call call is made via :
On Apr 17, 2014, at 20:50, Mengsteab Aregay mengsteab.are...@gmail.com wrote:
I don't want to accept anymore emails from
https://stat.ethz.ch/mailman/listinfo/r-devel. can u please unsubscribed me.
Read your own link. It has un-subscription instructions.
Thanks you
[[alternative
On Mar 20, 2014, at 8:19, Therneau, Terry M., Ph.D. thern...@mayo.edu wrote:
There is a central assertion to this argument that I don't follow:
At the end of the day most published results obtained with R just won't be
reproducible.
This is a very strong assertion. What is the evidence
On Mar 19, 2014, at 18:42, Joshua Ulrich josh.m.ulr...@gmail.com wrote:
On Wed, Mar 19, 2014 at 5:16 PM, Jeroen Ooms jeroen.o...@stat.ucla.edu
wrote:
On Wed, Mar 19, 2014 at 2:59 PM, Joshua Ulrich josh.m.ulr...@gmail.com
wrote:
So implementation isn't a problem. The problem is that
On Mar 19, 2014, at 22:17, Gavin Simpson ucfa...@gmail.com wrote:
Michael,
I think the issue is that Jeroen wants to take that responsibility out
of the hands of the person trying to reproduce a work. If it used R
3.0.x and packages A, B and C then it would be trivial to to install
that
On Mar 19, 2014, at 22:45, Jeroen Ooms jeroen.o...@stat.ucla.edu wrote:
On Wed, Mar 19, 2014 at 6:55 PM, Michael Weylandt
michael.weyla...@gmail.com wrote:
Reading this thread again, is it a fair summary of your position to say
reproducibility by default is more important than giving users
On Mar 4, 2014, at 10:21, Wang, Zhu zw...@connecticutchildrens.org wrote:
Dear Helpers,
I wanted to import an S3 method from package glmnet to my own R package.
Specifically, I tried the following:
plot.glmreg=function(x, xvar=c(norm,lambda,dev),label=FALSE,shade=TRUE,
...)
On Oct 9, 2013, at 21:18, Duncan Murdoch murdoch.dun...@gmail.com wrote:
On 13-10-09 7:54 PM, Henrik Bengtsson wrote:
On my related wishlist: A standardized mechanism to 'R CMD build' for
building man/*.Rd from any input format (e.g. roxygen and so on)
analogously how we can now build
https://stat.ethz.ch/pipermail/r-devel/2013-September/067563.html
Same instructions still apply -- this is a self-subscription list.
M
On Sep 24, 2013, at 0:42, Eric Malitz eric.mal...@gmail.com wrote:
take me off here
On Mon, Sep 23, 2013 at 10:31 PM, Gabriel Becker
On Sep 13, 2013, at 7:44, alku a...@dtu.dk wrote:
Hi,
The R CMD check is successful in R 3.0.1 but fails to install package
lmerTest under R-devel r63910,
Here is what I get:
** preparing package for lazy loading
Error in reconcilePropertiesAndPrototype(name, slots, prototype,
On Sep 10, 2013, at 18:38, Simon Urbanek simon.urba...@r-project.org wrote:
On Sep 10, 2013, at 12:56 PM, Sam Steingold wrote:
* Dirk Eddelbuettel r...@qrovna.bet [2013-09-10 10:21:33 -0500]:
On 10 September 2013 at 10:32, Sam Steingold wrote:
| (summary.default): show the vector
On Aug 23, 2013, at 11:15, Gavin Simpson ucfa...@gmail.com wrote:
Dear List,
I'm in the process of making tweaks to my various R packages following
changes in r-devel for package checks. I'm wondering about the one use
of ::: in one of my packages. I am arranging for a call to a
On Aug 22, 2013, at 9:09, Michael Friendly frien...@yorku.ca wrote:
In checking my vcdExtra package, the following NOTE newly appeared (R-Forge,
using R version 3.0.1 Patched (2013-08-20 r63635))
Package in Depends field not imported from: ‘gnm’
These packages needs to imported from for
On Aug 22, 2013, at 15:33, Henrik Bengtsson h...@biostat.ucsf.edu wrote:
On Thu, Aug 22, 2013 at 10:05 AM, R. Michael Weylandt
michael.weyla...@gmail.com michael.weyla...@gmail.com wrote:
On Aug 22, 2013, at 9:09, Michael Friendly frien...@yorku.ca wrote:
In checking my vcdExtra
On Aug 20, 2013, at 14:41, ivo welch ivo.we...@anderson.ucla.edu wrote:
A second enhancement would be a smart string, which knows that
everything inside {{...}} should be evaluated.
I think one the HTML templating libraries (whisker or mustache or some such)
provides something not unlike
On Wed, Jul 31, 2013 at 7:35 PM, Simon Urbanek
simon.urba...@r-project.org wrote:
On Jul 31, 2013, at 7:14 PM, Paul Gilbert wrote:
I am being asked to modernize the Depends line in the DESCRIPTION file of
some packages. Writing R Extensions says:
The general rules are
Packages whose
On Wed, Jul 17, 2013 at 9:58 AM, Brian Rowe r...@muxspace.com wrote:
Hello,
Section 4.3.2 of the R language definition [1] states that argument matching
to formal arguments is a 3-pass process to match arguments to a function. An
error is generated if any (supplied) arguments are left
It might also help if you can point us to the C code to help debug.
MW
On Tue, May 21, 2013 at 10:53 AM, Robin Evans rj...@cam.ac.uk wrote:
I should add to this that I'm running on Scientific Linux 6. I later
noticed that the bug only seems to occur when I run the code from Rstudio,
and not
Can you post the offending package?
On Fri, May 3, 2013 at 8:46 AM, Knut Krueger r...@knut-krueger.de wrote:
Where can I found hepl about latex errors:
the R CMD check tells me less, but:
* checking PDF version of manual ... WARNING
LaTeX errors when creating PDF version.
This typically
On Thu, May 2, 2013 at 12:50 AM, Jewell, Chris c.p.jew...@massey.ac.nz wrote:
Hi,
I was wondering if anybody knew how to trap SIGINTs (ie Ctrl-C) in backend
C++ code for R extensions? I'm writing a package that uses the GPU for some
hefty matrix operations in a tightly coupled parallel
On Thu, May 2, 2013 at 12:35 AM, philchalmers
rphilip.chalm...@gmail.com wrote:
Hi All,
I'm wondering why when passing a single numeric value that contains any
decimals to diag() that the value is silently coerced to a integer for
constructing an identify matrix. To me, an input like
On Thu, May 2, 2013 at 5:12 PM, Jony Hudson jony.hud...@imperial.ac.uk wrote:
Hi,
I'm trying to cross-compile R to javascript so that it can run in a
web-browser. Take as long as you need to stop laughing. So, as I was saying -
I want to try and get a build of R running in the browser. [If
Moving to the more on topic R-devel list.
On Apr 2, 2013, at 2:14, Craig Watson craig.o.wat...@gmail.com wrote:
I am having a strange problem. I have been using python + rpy2 on my Mac
for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and
that's when the problem began.
On Fri, Mar 22, 2013 at 7:43 PM, Josh O'Brien joshmobr...@gmail.com wrote:
Some other functions that query the nature of an object (e.g. class(),
length(), attributes()) do not modify the object's named field. Is
there a reason that typeof() should?
Because it's not implemented as a primitive
Applicable against current trunk and (I believe) R-3.0.0 branch.
Michael
Index: doc/NEWS.Rd
===
--- doc/NEWS.Rd (revision 62340)
+++ doc/NEWS.Rd (working copy)
@@ -183,7 +183,7 @@
through as bytes inputs invalid in the
Not an R-devel question.
Wait for a response for your cross post to R-help.
MW
On Thu, Mar 14, 2013 at 9:51 AM, Manoj G mano...@isim.net.in wrote:
I tried drawing some decision trees. Since the number of levels are more in
the tree, the plot result for the decision tree is not clear and
R FAQ 7.31
Cheers,
MW
On Thu, Feb 7, 2013 at 10:05 AM, Davide Rambaldi davide.ramba...@ieo.eu wrote:
Hello everybody:
I get a strange behavior with seq, take a look at this:
msd - seq(0.05,0.3, 0.01)
msd[13]
[1] 0.17
class(msd)
[1] numeric
class(msd[13])
[1] numeric
typeof(msd[13])
On Dec 18, 2012, at 12:48 PM, Etienne Sévin e.se...@epiconcept.fr wrote:
Hey all,
We are building a R connector for our web application.
The user can upload a script so it can be executed on the server.
Is there a way to scan the script for insidious commands (writing on the
disk for
On Wed, Nov 28, 2012 at 12:47 PM, Duncan Murdoch
murdoch.dun...@gmail.com wrote:
On 12-11-28 7:39 AM, Ivan Calandra wrote:
Dear users,
I am looking for a function to choose a folder interactively, just like
file.choose() but for a folder.
choose.dir() does exist on Windows, so you could
Should I file an issue for this in the bug tracker?
Slighly rearranged discussion with reproducible example follows on below.
Em 26-11-2012 21:39, R. Michael Weylandt escreveu:
On Mon, Nov 26, 2012 at 2:41 PM, Ludo Pagie l.pa...@nki.nl wrote:
tbl.char1 - table(c('a','a'))
tbl.char2 - table
Hi Jose,
I think this is more of an r-help question so I'm going to forward
your question there: R-devel is really for the development of R
itself, not development with R.
Cheers,
Michael
On Mon, Oct 29, 2012 at 8:11 PM, jose ramon mazaira jram...@gmail.com wrote:
Hi. I'm trying to write an
By analogy with maintainer(), I suggest extending license() to give
the licensing terms of packages as well as R itself when prompted.
Below is a small patch in that direction. This won't break anything
and imposes no significant maintenance burden; it has the advantage of
making it ever so
On Tue, Sep 11, 2012 at 4:35 PM, Milan Bouchet-Valat nalimi...@club.fr wrote:
Le mardi 11 septembre 2012 à 16:53 +0200, Basil Abou El-Komboz a écrit :
Dear useR's,
today I stumbled over an interesting phenomenon: First, I created a
named numeric vector with a certain class and several
/src/main/attrib.c contains this comment in row_names_gets():
/* This should not happen, but if a careless user dput()s a
data frame and sources the result, it will */
which svn blame says Prof Ripley placed there in r39830 with the
commit message correct the work of dput() on the
On Tue, Aug 28, 2012 at 1:00 PM, Simon Urbanek
simon.urba...@r-project.org wrote:
On Aug 28, 2012, at 1:51 PM, R. Michael Weylandt wrote:
/src/main/attrib.c contains this comment in row_names_gets():
/* This should not happen, but if a careless user dput()s a
data frame
Just for the record, I don't see that error with 2.15.0 or with
R-Devel 60040-someodd. Both display
foo - function(x) cat(x, \n)
prompt(name = foo)
Created file named ‘foo.Rd’.
Edit the file and move it to the appropriate directory.
Best,
Michael
On Sun, Jul 29, 2012 at 12:17 PM, Paul Roebuck
On Tue, Jul 24, 2012 at 2:30 PM, luxInteg lux-in...@btconnect.com wrote:
Greetings,
I am learning R
My machine has these;
CPU: 3cores amd64
OS pure-64bit CBLFS liux compiled from sources (kernel 3.2.1, gcc-4.6.2
R-2.15
When I compiled R the compiler spewed out lines like these:-
1) Move this off R-devel to R-help.
2) Read the IO manual here: http://cran.r-project.org/manuals.html
3) You probably want to look at the read.table() function's help page
by typing ?read.table
Michael
On Mon, Jul 23, 2012 at 12:32 PM, walcotteric walco...@msu.edu wrote:
I'm trying to load a
Tal's wonderful aggregator recently reblogged this post:
http://rsnippets.blogspot.com/2012/06/you-should-not-use-split-in-production.html
It's a rather obscure little buglet [and probably only arises in
pathological cases], but I don't know if it's not a case that deserves
a bit of consideration
R has multiple OO paradigms, but since you're starting from a point of
I want object oriented, I'd guess you would be interested in the S4
paradigm which is stricter rather than the far more sane S3 system.
If S4 is for you, there are some good links here:
In the examples for StructTS -- ($RHOME)/library/stats/man/StructTS.Rd -- could
par(mfrow = c(4, 1))
plot(log10(UKgas))
plot(cbind(fitted(fit), resids=resid(fit)), main = UK gas consumption)
become
plot(log10(UKgas))
par(mfrow = c(4, 1))
plot(cbind(fitted(fit), resids=resid(fit)), main = UK gas
http://cran.r-project.org/doc/manuals/R-exts.pdf
Ships with every distribution of R
Michael
On Apr 29, 2012, at 10:08 AM, nossa hamdi_i...@hotmail.fr wrote:
Please give me the necessary links that permits me to create my own package
inR
--
View this message in context:
In the source section of ?rlogis, we see:
Source:
‘[dpr]logis’ are calculated directly from the definitions.
‘rlogis’ uses inversion.
Should that read [dpq]logis instead?
Michael
__
R-devel@r-project.org mailing list
I'm not sure if this is a bug or expected behavior, but I don't see
anything in the documentation that explains it, so I thought I'd
mention it:
~ michaelweylandt$ R -q --vanilla
library(compiler)
enableJIT(3)
`+` # Throws an error
`+` # Throws a warning
`+` # Prints the primitive as expected
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