Re: [Bioc-devel] library() calls removed in simpleSingleCell workflow

Hi guys, - this is a very interesting discussion, and thanks for sharing your ideas. On a maybe relevant note, during my previous effort trying to create an alternative workflow auto-build system based on Docker containerization using my package liftr, I found some similar issues in declaring

Re: [Bioc-devel] TLS error in vignette on all devel builds

Hi Vladimir, - it looks like the same issue as reported here a few days ago: https://stat.ethz.ch/pipermail/bioc-devel/2017-September/011540.html Probably due to the hs-tls bug which caused the communication errors between pandoc and Google servers. Best, -Nan On Fri, Sep 15, 2017 at 5:40 AM,

Re: [Bioc-devel] pandoc SSL error on malbec2 and tokay2

sounds like a good long-term solution. Thanks again, -Nan -- https://nanx.me On Wed, Sep 6, 2017, at 14:48, Martin Morgan wrote: > On 09/05/2017 10:35 AM, Nan Xiao wrote: > > Hey Kasper, > > > > - I really appreciate your help. Although it didn't help answer the > >

Re: [Bioc-devel] pandoc SSL error on malbec2 and tokay2

is > highly personal anyway.> > Best, > Kasper > > On Mon, Sep 4, 2017 at 12:38 PM, Nan Xiao <m...@nanx.me> wrote: >> Dear BioC, >> >> - I see some very recent build errors for my packages (vignettes) >>which>> use Google Fonts:

[Bioc-devel] pandoc SSL error on malbec2 and tokay2

Dear BioC, - I see some very recent build errors for my packages (vignettes) which use Google Fonts: pandoc: Could not fetch https://fonts.googleapis.com/css?family=Alegreya+Sans:400,400i,700 TlsExceptionHostPort (HandshakeFailed Error_EOF) "fonts.googleapis.com" 443 For example

Re: [Bioc-devel] Writing examples for accessing web API

- this check can be bypassed by writing "partially working" examples, for instance: #' token = "foo" #' \dontrun{ #' api(..., token)} Best, -Nan On Tue, Mar 7, 2017 at 2:13 PM, Welliton Souza wrote: > Hi Sean, > > It doesn't require authentication. I've been using this

Re: [Bioc-devel] Dependency update propagation (rcdk on morelia)

to be installed. > > Dan > > > - Original Message - > > From: "Zach Charlop-Powers" <zach.charlop.pow...@gmail.com> > > To: "Nan Xiao" <road2s...@gmail.com> > > Cc: "bioc-devel" <bioc-devel@r-project.org> >

Re: [Bioc-devel] Dependency update propagation (rcdk on morelia)

Hey guys, - it seems this problem is also affecting the other two Bioc packages depending on rcdk, i.e. RMassBank and rcellminer (release + devel). Any ideas why? Thanks, -Nan On Fri, Dec 2, 2016 at 2:29 PM, Nan Xiao <road2s...@gmail.com> wrote: > Hi Bioc, > > - the Rcpi

[Bioc-devel] Dependency update propagation (rcdk on morelia)

Hi Bioc, - the Rcpi package depends on rcdk, and the rcdk package was updated last week from 3.3.6 to 3.3.8 on CRAN thanks to Zach's (cc'd) work, which removed the Java > 1.8 requirement (previously discussed in https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009881.html ). I've updated