Rui
> x <- array(runif(60), dim = c(10, 2, 3))
> array(x[slice.index(x,1) %in% 1:5],c(5,dim(x)[-1]))
(I don't see this on stackoverflow; should I post this there too?) Most of
the magic package is devoted to handling arrays of arbitrary dimensions and
this functionality might be good to include
t; >
> > ?
> >
> >
> >
> >
> > On 2020-02-29 2:42 a.m., Rui Barradas wrote:
> >> Hello,
> >>
> >> FAQ 7.31
> >>
> >> See also this StackOverflow post:
> >>
> >> https://stackoverflow.com/questions/9508518/w
My interpretation of dput.Rd is that dput() gives an exact ASCII form
of the internal representation of an R object. But:
rhankin@cuttlefish:~ $ R --version
R version 3.6.2 (2019-12-12) -- "Dark and Stormy Night"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform:
Terry, speaking as a package author I would say that the package is the
primary unit of organisation of R functionality, and package considerations
should trump R style considerations. Packages should be self-contained as
far as possible.
Having said that, many of my own packages use---shall we
Having written the 'lorentz' ,'Davies' and 'schwarzschild' packages,
I'm interested in packages that are named for a particular person.
There are (by my count) 34 packages on CRAN like this, with names that
are the surname of a particular (real) person. Of these 34, only 7
are capitalized.
Gabriel, you ask an insightful and instructive question. One of R's
great strengths is that we have a forum where this kind of edge-case
can be fruitfully discussed.
My interest in this would be the names of the arguments; in the magic
package I make heavy use of the dimnames of zero-extent
Hello, macosx 10.13.6, Rdevel r76458
I'm trying to compile against openblas to reproduce an error on the
CRAN check page (my package is clean under winbuilder and all but one
of the checks). I've downloaded and installed openblas 0.3.7 but I
am not 100% sure that it is being used by R.
Using
Tomas Kalibera wrote:
>
> On 3/1/19 9:03 AM, robin hankin wrote:
> > OK thanks Tomas, but I get
> >
> >
> > OK~ sudo apt-get build-dep r-base
> > Reading package lists... Done
> > E: Unable to find a source package for r-base
> > OK~
>
> It seem
OK thanks Tomas, but I get
OK~ sudo apt-get build-dep r-base
Reading package lists... Done
E: Unable to find a source package for r-base
OK~
hankin.ro...@gmail.com
On Fri, Mar 1, 2019 at 8:47 PM Tomas Kalibera wrote:
>
> On 3/1/19 7:10 AM, robin hankin wrote:
> > thanks f
ine PACKAGE_VERSION "3.6.0"
| #define PACKAGE_STRING "R 3.6.0"
| #define PACKAGE_BUGREPOR
hankin.ro...@gmail.com
On Mon, Feb 25, 2019 at 9:39 PM Tomas Kalibera wrote:
>
> On 2/25/19 6:25 AM, robin hankin wrote:
> > Hi there, ubuntu 18.04.2, trying to compi
Hi there, ubuntu 18.04.2, trying to compile R-devel 3.6.0, svn 76155.
I am having difficulty compiling R. I think I have pcre installed correctly:
OK~/Downloads/R-devel pcretest -C
PCRE version 8.41 2017-07-05
Compiled with
8-bit support
UTF-8 support
No Unicode properties support
No
gt; Returning a logical of length 0 is more backwards compatible, but is it
>>>> ever what the author actually intended? I have trouble thinking of a
>>>> case
>>>> where that less-than didn't carry an implicit assumption that y was
>>>> non-NULL. I can say that
ollowing. These *all* give an error in current R-devel,
> with the exception of 'm1 + NULL' which "only" gives a "bad
> warning" :
>
>
>
> m1 <- matrix(1,1)
> m2 <- matrix(1,2)
>
> m1 + NULL #numeric(0) in R <= 3.3.x --->
users' reports.
Can anyone advise?
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1+0i
eigen(B,T,T)$values# answers agree as expected if 'symmetric' means
'Hermitian'
[1] 3 1
C - matrix(c(2,1i,1i,2),2,2)# 'C' is symmetric
eigen(C,F,T)$values
[1] 2-1i 2+1i
eigen(C,T,T)$values # answers disagree because 'C' is not Hermitian
[1] 3 1
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,package=emulator)
[1]
So I can't retrieve uncertainty.bib and this means that several other
packages can't bibtex correctly. Can anyone advise?
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?
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to magic hypercubes.
Does the List have any comments?
rksh
Hadley
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Department of Statistics / Rice University
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subscribers advise?
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(dim(a)[5:7] ==
dim(M2)) for consistency.
Can any R-devel subscribers advise?
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, only.values, PACKAGE = base)
2: eigen(crossprod(matrix(1:2000, 50)) + (0 + (0+0i)), T, T)
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: 2
wt118:~%
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for package ‘Brobdingnag’
* removing ‘/Users/rksh/packages/Brobdingnag.Rcheck/Brobdingnag’
wt118:~/packages%
AFAICS, all the setGeneric() calls are pretty much like this:
setGeneric(getX,function(x){standardGeneric(getX)})
Can anyone advise?
thank you
Robin
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Mac, and I expect that it is down
to some latex setting or style file.
Does anyone recognize this problem?
Can anyone advise?
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examine for Best Practice?
thanks
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in code2LazyLoadDB(package, lib.loc = lib.loc, keep.source =
keep.source, :
name space must not be loaded.
ERROR: lazy loading failed for package ‘MM’
This error seems to be system-dependent. All of the depencies are
packages which
are on CRAN and AFAICS pass R CMD check.
Can anyone advise?
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'a'
is an array?
How can I make foo(a) behave as desired when 'a' is an object of
class 'Oarray'?
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into producing jpg files instead of PDF?
Can anyone advise?
thanks
Robin
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=xyClose, echo=FALSE=
null - dev.off()
@
\begin{figure}
\begin{center}
\includegraphics{xyPlot.png}
\end{center}
\end{figure}
Original message
Date: Sun, 13 Feb 2011 10:54:37 +1300
From: r-devel-boun...@r-project.org (on behalf of robin hankin
hankin.ro...@gmail.com
wishes
Robin Hankin
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Hello everyone. R-2.12.0, suse linux 11.3.
I am debugging a package that uses S4 methods
and R CMD check gives the following warning:
Warning in methods::findMethods(g, env) :
non-generic function 'mdm' given to findMethods()
See the information on DESCRIPTION files in the chapter
Hello.
I am trying to write an S4 method for rbind(). I have a class of objects
called 'mdm', and I want to be able to rbind() them to one another.
I do not want the method for rbind() to coerce anything to an mdm object.
I want rbind(x1,x2,x1,x2) to work as expected [ie rbind() should take any
Morgan wrote:
On 10/26/2010 03:53 AM, Robin Hankin wrote:
Hello.
I am trying to write an S4 method for rbind(). I have a class of objects
called 'mdm', and I want to be able to rbind() them to one another.
I do not want the method for rbind() to coerce anything to an mdm object.
I want rbind
Hello Peter
thanks for this.
On 07/30/2010 11:01 AM, peter dalgaard wrote:
What's wrong with
t.complex- function(x) t.default(Conj(x))
M- matrix(rnorm(4)+1i*rnorm(4),2)
M
It's not going to help with the cross products though.
As a general matter, in my book, transpose is
Hi Martin
I think you're absolutely right about this;
One thing I need again and again is
a multinomial function, and usually define:
lmultinomial
function (x)
{
lfactorial(sum(x)) - sum(lfactorial(x))
}
multinomial
function (x)
{
exp(lmultinomial(x))
}
It would be nice to have this
Martin Becker wrote:
Robin Hankin wrote:
...
Is this the place to discuss having complex
arguments for gamma()?
...
If this discussion starts I would second the wish for the
functionality of gsl's lngamma_complex in base R.
Do you mean gsl or GSL? ;-)
[the GNU scientific library is 'GSL
Hi
I am having difficulty defining an S4 method for head() and tail().
I can't quite provide minimal self-contained code
because the problem appears to require the whole corpus
of my package; and there also appears to be a difference
between sourcing the lines directly, and having them
Hi
[R-2.10.0; suse linux]
I am having difficulty creating S4 objects in the data directory of a
package. I want
to create a bunch of simple S4 objects for use in the examples section
of the Rd files.
It says in R-exts that:
R code should be “self-sufficient” and not make use of extra
Hi
I read that bundles are to be deprecated in 2.10.
The BACCO bundle contains three packages
(emulator, calibrator, approximator) which I
am happy to unbundle.
But the 'BACCO' moniker has some considerable
cachet for me in terms of recognizability (eg
with grant-giving bodies), as it has
Hi
[R-2.9.0]
I am having difficulty including a LaTeX formula in an Rd
file.
The example given in section 2.7 in 'Parsing Rd files' is:
\deqn{ f(x) = \left\{
\begin{array}{ll}
0 x0 \\
1 x\ge 0
\end{array}
\right. }{non latex}
For me, this gives:
\deqn{ f(x) =
Hi
I have a bundle comprising three packages.
Each package has a vignette. Currently each
vignette has a separate .bib file.
How do I arrange the bundle so that each
vignette accesses a single, common, .bib file?
thanks
Robin
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Uncertainty Analyst
University of
,
Something like:
echo=FALSE=
bib - system.file( bib, mybib.bib, package = yada )
cat( \\bibliography{,bib,}\n)
@
It would also be nice to be able to use bibliography in Rd files ...
Romain
Robin Hankin wrote:
Hi
I have a bundle comprising three packages.
Each package has a vignette. Currently each
don't understand why your first suggestion worked.
How does TeX 'know' that this is not to be included verbatim?
best wishes and thanks again
Robin
Robin Hankin wrote:
Hello Romain
this is brilliant; it never occurred to me to use cat() in this way.
It works but I don't know why.
With:
echo
Dear All
I am preparing a number of vignettes that require a very long time to
process with Sweave. The longest one takes 10 hours. I love the weaver
package!
Is a package that includes such a computationally intensive vignette
acceptable on CRAN? Are there any guidelines here?
--
thanks for this clarification Uwe
Could I include the r_env_cache/ directory in the package
and then assume that the CRAN checks use
Sweave( , driver=weaver())
in which case the process takes about 10 seconds?
rksh
Uwe Ligges wrote:
Robin Hankin wrote:
Dear All
I am preparing
Prof Brian Ripley wrote:
I think you meant \describe
On Mon, 5 Jan 2009, Robin Hankin wrote:
Hi
The aylmer package generates a warning (under R-2.9.0) for an Rd file
which I think is OK.
The package is clean under R-2.8.1.
Did you actually look at the help under 2.8.1: it is I am
Hi
I make a point of going through my packages every so often and perusing
the check results on CRAN.
The aylmer package generates a warning (under R-2.9.0) for an Rd file
which I think is OK.
The package is clean under R-2.8.1.
Specifically, the warning is:
* checking Rd files ... OK
Hi.
I have been pondering array indexing via matrices.
a - array(1:27,rep(3,3))
index - matrix(c(1,1,1,1,2,3),2,3,byrow=TRUE)
a[index]
[1] 1 22
as expected and documented. But what was the thinking
behind the decision to access the array by rows rather
than columns?
The 'index' matrix
the check to be performed by default to
stop anyone (me) from being too clever and defining
a non-standard foo object that doesn't meet .checkfoo().
What is best practice here?
Are there any examples I could copy?
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' to take its default
value of FALSE, and 'NC' not be recalculated.
How to do this?
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European Way, Southampton SO14 3ZH, UK
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R
1.082225
sample estimates:
odds ratio
0
*just* shy of the magic 5% . . .
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sense: to me NaN means not a number
and I want
the sense to be not available.
Any advice?
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Uncertainty Analyst and Neutral Theorist,
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
On 10 Mar 2008, at 11:03, Prof Brian Ripley wrote:
On Mon, 10 Mar 2008, Martin Maechler wrote:
{Diverted from an R-help thread}
Robin == Robin Hankin [EMAIL PROTECTED]
on Mon, 10 Mar 2008 08:49:06 + writes:
Robin Hello Baptiste Bessel functions with complex
Robin arguments
+ and -.
If trim is TRUE, then a is one thing, but +a returns
trim(a), which might be different.
Also 1*a would be different from a and a+0
Does the List consider this to be Good Practice?
Has anyone got comments?
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a has been
reassigned.
[my real example is very much more complicated than this but
I need this toy one too and I can't see how to modify
as.function.polynomial()
to do what I want]
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more complicated than a vector.
And I don't have an example that works on a complicated object
to copy.
Hope this help
On 14/01/2008, Robin Hankin [EMAIL PROTECTED] wrote:
Antonio
thanks for your help here, but it doesn't answer my question.
Perhaps if I outline my motivation it would
On 14 Jan 2008, at 11:50, Duncan Murdoch wrote:
Robin Hankin wrote:
Hi
[snip]
a - crossprod(matrix(rnorm(12),ncol=3))
class(a) - foo
f - as.function(a) # need help to write as.function.foo()
x - diag(3)
f(x) #should give tr(ax)
a - 4
f(x) # should still
, although
I've not yet finalized the coding.
S4 seems to be overkill for such a simple system.
Can anyone give me some motivation for persisting with S4?
Or indeed reassure me that S3 is a good design decision?
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package?
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On 5 Oct 2007, at 15:47, Robin Hankin wrote:
Hello
One of my packages, untb_1.3-2, passes R CMD check under
MacOSX (and apparently the systems used in the package check
summary page on CRAN) but fails with the following message on
R-2.6.0.tgz compiled last night on my (home) linux box. I
)
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Ripley points out, sequence() itself does (which I
think is
undesirable).
Robin Hankin
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of the following 'enhanced'
sweep?
(now posted at
http://wiki.r-project.org/rwiki/doku.php?id=rdoc:base:sweep
)
It always warns if dim(x)[MARGIN] is
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- function(r,o){stop(RO not implemented)}
setMethod(Arith, signature
(o1=onion,o2=onion ), .onion.onion.arith)
setMethod(Arith, signature(o=onion,r=ANY ), .onion.real.arith)
setMethod(Arith, signature(r=ANY,o=onion ), .real.onion.arith)
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,
representation = VIRTUAL
)
setClass(octonion,
representation = representation(x=matrix),
prototype = list(x=matrix(numeric(),0,8)),
contains = onion
)
jj - new(octonion,x=as.matrix(1:8))
inherits(jj,onion)
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.
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) - jj.names
colnames(o) - jj.names
diag(o) - -apply(o,1,sum,na.rm=TRUE)
return(o)
}
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BACCO.dvi
octopus:~/scratch% R CMD Rd2dvi ./BACCO
Hmm ... looks like a package bundle
[snip].
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on the simple plot
}
}
I think that it would be better to somehow precalculate the
uncertainty stuff and plot it separately.
How best to do this
in the context of an S3 method for plot()?
What is Best Practice here?
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and ampersands are
being escaped somehow, and TeX isn't interpreting
them as desired.
How do I write an Rd file so that the output of R CMD Rd2dvi
includes a nicely typeset matrix?
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tel
)
setMethod(Arith,signature(e2 = glub), .ArithGlub)
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(0), signature =
x, default =
Am I doing something wrong?
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,y)c(x, [EMAIL PROTECTED]))
setMethod(cPair, c(ANY, ANY), function(x,y)c(x,y))
Robin Hankin wrote:
[snip]
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(...))
}
and then write methods for cPair().
John
Robin Hankin wrote:
Hello everybody.
I didn't see Franklin's first message; sorry.
Bearing in mind Professor Ripley's comments
on the efficiency of S4 vs S3, I'm beginning to think I
should just stick with S3 methods for my brob objects
have mooted the above.
(also, i thought i sent this last week, but i may have neglected to
make it plain text, so maybe you didn't get it)
franklin parlamis
On Sep 4, 2006, at 3:47 AM, Robin Hankin wrote:
Hi everyone and thanks for being patient. I've used !.foo() et
seq pro tem.
Next
x - new(brob,x=pi,positive=T)
c(x,x)
but c(1,x) isn't dispatched to my function. How to
deal cleanly with this case? Perhaps if any argument
to c() is a brob object, I would like to coerce them all to brobs.
Is this possible?
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), .logicBrob)
but this does not work as desired (setMethod() gives an error). I want,
for example,
!new(brob, x=1:10,positive=rep(T,10))
to call .logicBrob() and report an error.
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National Oceanography Centre, Southampton
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()
]
What is the correct way to make sum(x) call .Brob.max() if x is a
brob object?
Or is is it better to define a sum.brob() function and use that?
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Error in setMethod(Logic, signature(e1 = brob), function(e1, e2) { :
no existing definition for function 'Logic'
?Math seems to imply that there is no Logic group.
So, what is the correct way to specify that logical operations are
not allowed for brob objects?
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? Or indeed
is making thing
a vector class as sensible idea here?
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https
-of-a-four-row-matrix
method?
best wishes
Robin
On 29 Aug 2006, at 11:11, Martin Maechler wrote:
Robin == Robin Hankin [EMAIL PROTECTED]
on Tue, 29 Aug 2006 10:42:21 +0100 writes:
Robin In the Green Book, section 7.5 discusses new vector
classes and uses
Robin quaternions
is no problem...but what is the S4 equivalent to
the S3 technique of writing an Ops.track() function that tells
R what + means?
--
Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
is best practice in such situations?
--
Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
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consisting of logs of Stirling numbers calculated by Maple.
As discussed on the List a few days ago (thanks again David!)
Stirling numbers are computationally challenging;
one needs exact integer arithmetic for very large
integers for their calculation (a 100x100 table requires ~10^157)
]
--
Robin
is a widely used computer algebra system designed for fast
computations
in number theory. It is freely available at
http://pari.math.u-bordeaux.fr/
]
--
Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
system powerpc, darwin8.7.0
status Under development (unstable)
major 2
minor 4.0
year 2006
month 07
day09
svn rev38523
language R
version.string R version 2.4.0 Under development (unstable)
(2006-07-09 r38523)
--
Robin
0x2cec in main (ac=42293336, av=0x1) at Rmain.c:33
(gdb)
--
Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
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R-devel@r-project.org mailing list
https
suspect the compiler.
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Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
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want to leave all the others unchanged.
What is Best Practice for redefining just one binary operator?
On 6/19/06, Robin Hankin [EMAIL PROTECTED] wrote:
Hi
Suppose I have two tables of counts of different animals and I
wish to pool them so the total of the sum is the sum of the total
: Unknown error: 0
Robin-Hankins-Computer:~/scratch%
anyone got any insight into this?
--
Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
__
R-devel@r-project.org
with signed long long integers]
--
Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
238-250:~/scratch/R-beta%
--
Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
__
R-devel@r-project.org mailing list
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) (2006-01-04
r36984)
Note the strange magnitude of the output.
[
I need this to work because one of my packages fails under R-devel
]
--
Robin Hankin
Uncertainty Analyst
National Oceanography Centre, Southampton
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
this in R that I have overlooked?
/Henrik
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European Way, Southampton SO14 3ZH, UK
tel
(), arev()
enjoy!
]
On 29 Nov 2005, at 15:17, Gabor Grothendieck wrote:
I couldn't find it:
library(magic)
apltake
Error: object apltake not found
On 11/29/05, Robin Hankin [EMAIL PROTECTED] wrote:
Hi everyone
apltake(x,1)
[where apltake() is part of library(magic)]
does this.
best
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