Espero que esto te llegue a tiempo, hice un viaje a La República de Benin y se
me fue robado el bolso con mi Pasaporte Internacional, Tarjetas de Crédito y mi
teléfono celular dentro. La Embajada está deseando ayudarme con dejarme tomar
un vuelo sin mi Pasaporte, solo que tengo que pagar por el
I have unsubscribed Cristobal from bioc-devel until he regains control of his
email account.
Dan
- Original Message -
From: =?utf-8?q?Cristobal Fresno Rodr=C3=ADguez
=3Ccristobalfresno=40gmail=2Eco?= =?utf-8?q?m=3E?=
Dear Bioconductors,
We're pleased to announce the availability of Bioconductor Git Mirrors.
These are read-only GitHub repositories (available under
https://github.com/Bioconductor-mirror)
for every Bioconductor software package. These repositories are synchronized
with our
Subversion
PROBLEM:
I'm getting error:
Error in order(matches$Position) : argument 1 is not a vector
Whenever I try to access a package's Code demos page via the link on
the package HTML index page.
SOME TROUBLESHOOTING:
Looking at for instance the 'stats' package. The Code demos URL
takes the form
Hello,
I was attempting to run SPIA through the graphite package and ran into
an odd error when running prepareSPIA on the human Reactome pathways.
You can reproduce the error simply and quickly by:
library(graphite)
prepareSPIA(pathways(hsapiens, reactome)[Insulin receptor
signalling
Hi!
I was wondering whether anybody was looking at the bugs on Bugzilla. I'm
asking because I've seen bugs tackled on the mailing list quite quickly,
but two fully reproducible reports I've filed on Bugzilla haven't
triggered any reaction in several weeks (for the older one).
FWIW, these are:
-
Thanks Ivana,
I've forwarded your message to the bioc-devel list so graphite
developers can see it.
-Ryan
On 06/16/2015 12:46 PM, ihnat...@iba.muni.cz wrote:
Hello,
this problem is caused by the presence of interaction type
control(In(INHIBITION-COMPETITIVE)) which is missing in the
Correct link is http://bioconductor.org/developers/how-to/git-mirrors/
On Tue, Jun 16, 2015 at 3:00 PM Dan Tenenbaum dtene...@fredhutch.org
wrote:
Dear Bioconductors,
We're pleased to announce the availability of Bioconductor Git Mirrors.
These are read-only GitHub repositories (available
This is great to hear. I sometimes want to delve into the source code of
a package's internals, but doing so through the SVN web interface is
clunky. Being able to use Github's repo browsing functionality for Bioc
packages is great.
On 06/16/2015 12:00 PM, Dan Tenenbaum wrote:
Dear
Hi Milan,
I can't reproduce your first bug in R 3.2 on Windows 8.1, and I fail to
reproduce that one in R 3.1.2 as well. So that might explain why that one
isn't tackled.
The second bug you reported I can reproduce.
Cheers
Joris
On Tue, Jun 16, 2015 at 9:18 PM, Milan Bouchet-Valat
Terry Therneau has been very helpful on r-help but we can't figure out
what change in R in the past months made extra columns appear in
model.matrix when the terms object is subsetted to remove stratification
factors in a Cox model. Terry has changed his logic in the survival
package to avoid
Hi, first time poster here. During my time using R, I have always found
string concatenation to be (what I feel is) unnecessarily complicated by
requiring the use of the paste() or similar commands.
When searching for how to concatenate strings in R, several top search
results show answers that
Hi,
This sounds great! Not having to setup all those bridges everytime a
new BioC version is released should be a great feature, plus keeping
the commit history tidy. And we can still use Travis or other things
like Slack notifications on our own bridges. I guess that it'd be good
to remind
On Tue, Jun 16, 2015 at 8:55 PM, Leonardo Collado Torres
lcoll...@jhu.edu wrote:
Hi,
This sounds great! Not having to setup all those bridges everytime a
new BioC version is released should be a great feature, plus keeping
the commit history tidy. And we can still use Travis or other things
Bad choice of words I'm afraid. What I'm ultimately pushing for is a
feature request. To allow string concatenation with '+' by default. Sure I
can write my own string addition function (like the example I posted
previously) but I use it so often that I end up putting it in every script
I write.
- Original Message -
From: Dan Tenenbaum dtene...@fredhutch.org
To: Leonardo Collado Torres lcoll...@jhu.edu
Cc: bioc-devel bioc-devel@r-project.org
Sent: Tuesday, June 16, 2015 8:10:56 PM
Subject: Re: [Bioc-devel] Bioconductor Git/GitHub Mirrors
- Original Message -
- Original Message -
From: Leonardo Collado Torres lcoll...@jhu.edu
To: Ryan C. Thompson r...@thompsonclan.org
Cc: Dan Tenenbaum dtene...@fredhutch.org, bioc-devel
bioc-devel@r-project.org
Sent: Tuesday, June 16, 2015 5:55:05 PM
Subject: Re: [Bioc-devel] Bioconductor Git/GitHub
- Original Message -
From: Leonardo Collado Torres lcoll...@jhu.edu
To: Ryan C. Thompson r...@thompsonclan.org
Cc: Dan Tenenbaum dtene...@fredhutch.org, bioc-devel
bioc-devel@r-project.org
Sent: Tuesday, June 16, 2015 5:55:05 PM
Subject: Re: [Bioc-devel] Bioconductor Git/GitHub
On Tue, 16 Jun 2015, Frank Harrell wrote:
Terry Therneau has been very helpful on r-help but we can't figure out what
change in R in the past months made extra columns appear in model.matrix when
the terms object is subsetted to remove stratification factors in a Cox
model. Terry has changed
One of the poster's on the SO post I linked to previously suggested this
but if '+' were made to be S4 compliant, then adding the ability to concat
strings with '+' would be a relatively simple addition (no pun intended) to
the code base I believe. With a lot of other languages supporting this
On Tue, Jun 16, 2015 at 10:30 PM, Joshua Bradley jgbradl...@gmail.com wrote:
One of the poster's on the SO post I linked to previously suggested this but
if '+' were made to be S4 compliant, then adding the ability to concat
strings with '+' would be a relatively simple addition (no pun
On Jun 16, 2015 3:44 PM, Joshua Bradley jgbradl...@gmail.com wrote:
Hi, first time poster here. During my time using R, I have always found
string concatenation to be (what I feel is) unnecessarily complicated by
requiring the use of the paste() or similar commands.
I don't follow. In what
- Original Message -
From: Dan Tenenbaum dtene...@fredhutch.org
To: Leonardo Collado Torres lcoll...@jhu.edu
Cc: bioc-devel bioc-devel@r-project.org, Ryan C. Thompson
r...@thompsonclan.org
Sent: Tuesday, June 16, 2015 7:02:36 PM
Subject: Re: [Bioc-devel] Bioconductor Git/GitHub
- Original Message -
From: Dan Tenenbaum dtene...@fredhutch.org
To: Leonardo Collado Torres lcoll...@jhu.edu
Cc: bioc-devel bioc-devel@r-project.org
Sent: Tuesday, June 16, 2015 8:05:37 PM
Subject: Re: [Bioc-devel] Bioconductor Git/GitHub Mirrors
- Original Message -
On Tue, Jun 16, 2015 at 10:02 PM, Dan Tenenbaum dtene...@fredhutch.org wrote:
- Original Message -
From: Leonardo Collado Torres lcoll...@jhu.edu
To: Ryan C. Thompson r...@thompsonclan.org
Cc: Dan Tenenbaum dtene...@fredhutch.org, bioc-devel
bioc-devel@r-project.org
Sent: Tuesday,
On Tue, Jun 16, 2015 at 6:32 PM, Joshua Bradley jgbradl...@gmail.com wrote:
[...]
An old (2005) post
https://stat.ethz.ch/pipermail/r-help/2005-February/066709.html on r-help
mentioned possible performance reasons as to why this type of string
concatenation is not supported out of the box but
Hi Joshua,
On 06/16/2015 03:32 PM, Joshua Bradley wrote:
Hi, first time poster here. During my time using R, I have always found
string concatenation to be (what I feel is) unnecessarily complicated by
requiring the use of the paste() or similar commands.
When searching for how to concatenate
On Tue, Jun 16, 2015 at 8:24 PM, Hervé Pagès hpa...@fredhutch.org wrote:
[...]
If I was to override `+` to concatenate strings, I would make it stick
to the recycling scheme used by arithmetic and comparison operators
(which is the most sensible of all IMO).
Yeah, I agree, paste's recycling
ok.
Many thanks for your help !
Best,
Gael.
De : Gabriel Becker [mailto:gmbec...@ucdavis.edu]
Envoyé : lundi 15 juin 2015 23:54
À : Hadley Wickham
Cc : Millot Gael; r-devel
Objet : Re: [Rd] Add on argument in seq()
Millot,
On Mon, Jun 15, 2015 at 9:19 AM, Hadley Wickham
Am .06.2015, 14:55 Uhr, schrieb Millot Gael gael.mil...@curie.fr:
Hi.
I have a problem with the default behavior of sample(), which performs
sample(1:x) when x is a single value.
This behavior is well explained in ?sample.
However, this behavior is annoying when the number of value is not
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