Re: [Bioc-devel] New Mac builder and availability of Mac binary packages

2020-04-10 Thread Hervé Pagès
On 4/10/20 17:22, Yang,Peng wrote: Hi Herve, Ok, I will use the condition to disable OpenMP for Mac OS. And I need to push it into the devel branch before Apr 24th? Just make sure that I understand it right. Yes, before Apr 24th. See our release schedule here:

Re: [Bioc-devel] New Mac builder and availability of Mac binary packages

2020-04-10 Thread Hervé Pagès
On 4/10/20 16:54, Yang,Peng wrote: Hi Herve, Thank you so much for hearing back from you. Actually we are thinking to switch OpenMP into MPI or other API, which is supported by R 4.0.0; however, it may take us for a while. In the meantime, I have noticed that the scheduled time to release R

[R-pkg-devel] R CMD check fails on namespace load for an installed package

2020-04-10 Thread Paul Bailey
When I try to R CMD check --as-cran the EdSurvey package for submission on R-devel I get this error: > > * installing *source* package 'EdSurvey' ... > ** using staged installation > ** R > ** inst > ** byte-compile and prepare package for lazy loading > Error: package or namespace load failed

Re: [Bioc-devel] New Mac builder and availability of Mac binary packages

2020-04-10 Thread Hervé Pagès
Hi Peng, You cannot "push" binaries. DeMixT has a compilation error (+ some imporant warnings) that seem to be caused by the use of OpenMP in its C code. Unfortunately, starting with R 4.0.0, R no longer supports OpenMP on macOS. You basically have 3 options, from best to worst: 1. use

Re: [Rd] missing binaries in R-devel windows snapshot 78175

2020-04-10 Thread Jeroen Ooms
On Fri, Apr 10, 2020 at 9:49 AM Martin Maechler wrote: > > > Jeroen Ooms > > on Fri, 10 Apr 2020 08:54:39 +0200 writes: > > > On Fri, Apr 10, 2020 at 2:42 AM Bravington, Mark (Data61, > > Hobart) wrote: > >> > >> > On Thu, Apr 9, 2020 at 12:44 PM Bravington, Mark >

Re: [Rd] missing binaries in R-devel windows snapshot 78175

2020-04-10 Thread Bravington, Mark (Data61, Hobart)
Thanks all--- my fault again, this time for not reading the openssl::md5() documentation. Binaries all present and correct after all (on my Cylance-free machine), and checksums working as they should... [Jeroen Ooms] > I think you're calculating the md5 of the filename, not the file. You

Re: [Rd] missing binaries in R-devel windows snapshot 78175

2020-04-10 Thread Gábor Csárdi
On Fri, Apr 10, 2020 at 8:49 AM Martin Maechler wrote: [...] > > > openssl::md5(file("R-devel-win.exe")) > > or use base R'stools::md5sum() > > md5sum() has existed forever, but needs you to do the > download.file() step which is indirectly happening in > openssl::md5() also. Don't

Re: [Rd] missing binaries in R-devel windows snapshot 78175

2020-04-10 Thread Martin Maechler
> Jeroen Ooms > on Fri, 10 Apr 2020 08:54:39 +0200 writes: > On Fri, Apr 10, 2020 at 2:42 AM Bravington, Mark (Data61, > Hobart) wrote: >> >> > On Thu, Apr 9, 2020 at 12:44 PM Bravington, Mark >> (Data61, Hobart) > >> wrote: >> > > >> > > The

Re: [Rd] missing binaries in R-devel windows snapshot 78175

2020-04-10 Thread Jeroen Ooms
On Fri, Apr 10, 2020 at 2:42 AM Bravington, Mark (Data61, Hobart) wrote: > > > On Thu, Apr 9, 2020 at 12:44 PM Bravington, Mark (Data61, Hobart) > > wrote: > > > > > > The "r-devel snapshot build" 78175 on Windows--- a dot-exe installer--- > > > seems to be missing a couple of files in its