Re: [Rd] Looking for R for Windows (rversion: 4.2.2) in base/old/%rversion%/R-%rversion%-win.exe

2023-01-09 Thread Uwe Ligges
On 08.01.2023 15:23, Peter Dalgaard wrote: Dunno what happened there, and Win binaries are generally "not my table". However, 4.2.2 is not old, so possibly should not be on that list at all. It is the current version, so can be obtained via the "here" link at the top of the page (i.e. https

[Rd] new toolchain "RTools43" for building devel binaries (both R base and packages)

2023-01-04 Thread Uwe Ligges
ools/rtools43/rtools.html>. Best, Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] [R] I do not want that R CMD build removes temp directory

2022-12-19 Thread Uwe Ligges
Ah, before that you wrote "" ERROR: lazy loading failed for package 'prolfqua' * removing 'C:Users " and C:Users without a slash sonds suspicious. Now with the new output I do not see where the issue is from. Does this also happen when you try it on winb

Re: [Rd] [R] I do not want that R CMD build removes temp directory

2022-12-16 Thread Uwe Ligges
. "** byte-compile and prepare package for lazy loading ERROR: lazy loading failed for package 'shiny' * removing 'C:/Users/witoldwolski/AppData/Local/R/win-library/4.2/shiny' Warning in install.packages :" Can we please have the full output? Best, Uwe Ligges On Th

Re: [Rd] R/CRAN switch to UCRT on Windows

2021-12-08 Thread Uwe Ligges
h and will be used temporarily to give package authors more time to fix their packages. Uwe Ligges, other CRAN team members and I have also been in touch with some package authors, providing advice how to fix their packages, when the issues required more explanation. I am prepared to hel

Re: [Rd] failing automatic incoming check

2020-09-08 Thread Uwe Ligges
e the test timing so that the overall check time is less than 10 min . Best, Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] CRAN incoming queue closed from Aug 09 to Aug 18

2019-08-05 Thread Uwe Ligges
Dear package developers, the CRAN incoming queue will be closed from Aug 09, 2019 to Aug 18, 2019. Hence package submissions are only possible before and after that period. CRAN maintainance work and some work on a possibly forthcoming Windows toolchain will be pushed forward. Best, Uwe

[Rd] CRAN incoming queue closed from Dec 21 to Jan 02

2018-12-17 Thread Uwe Ligges
Dear package developers, the CRAN incoming queue will be closed from Dec 21, 2018 to Jan 02, 2019. Hence package submissions are only possible before and after that period. Best, Uwe Ligges (for the CRAN team) __ R-devel@r-project.org mailing list

[Rd] CRAN incoming queue closed from Sep 1 to Sep 9

2018-08-14 Thread Uwe Ligges
Dear developers, the CRAN incoming queue will be closed from Sep 1 to Sep 9. Hence package submissions are only possible before and after that period. Best, Uwe Ligges (for the CRAN team) __ R-devel@r-project.org mailing list https://stat.ethz.ch

Re: [Rd] Library lib.loc Option Ignored for Dependencies

2018-07-25 Thread Uwe Ligges
equired by ‘statistics’ The latest version of the statistics package is loaded, but the directory of latest packages is ignored by R when it considers the package dependency. See my other mail, I think this is epctected, why don't youi set the .libPaths() correctly? Nor is this self contained a

Re: [Rd] Library lib.loc Option Ignored for Dependencies

2018-07-25 Thread Uwe Ligges
you may want to try some devekopment version of one package agaiunst release versions of the others. This is the purpose of the above: take spam from ~lib and the other from .libPath(). Best, Uwe Ligges Martin > On 07/21/2018 12:34 PM, Martin Maechler wrote: >>>>&

Re: [Rd] Base R examples that write to current working directory

2018-03-30 Thread Uwe Ligges
On 30.03.2018 00:08, Duncan Murdoch wrote: On 29/03/2018 5:23 PM, Hadley Wickham wrote: Hi all, Given the recent CRAN push to prevent examples writing to the working directory, is there any interest in fixing base R examples that write to the working directory? A few candidates are the graphi

[Rd] CRAN incoming services and winbuilder down Mar 9-10

2018-03-08 Thread Uwe Ligges
Dear list, due to a full power shutdown in the relevant building at TU Dortmund University we have to shut down winbuilder and the CRAN incoming check service from Mar 9, 5pm CET to Mar 10, 5pm CET Best, Uwe Ligges (CRAN team) __ R-devel@r

Re: [Rd] CRAN indices out of whack (for at least macOS)

2018-01-31 Thread Uwe Ligges
Thanks, Uwe On 31.01.2018 20:08, Simon Urbanek wrote: Dirk, yes, thanks, the edge server that serves the Mac binaries to CRAN has run out of disk space (due to size of CRAN itself) so the sync was incomplete. It is fixed now -- you can try by using the macos master server as mirror: https://

Re: [Rd] bugzilla issues

2018-01-26 Thread Uwe Ligges
Simon, can you take a look, please? Best, Uwe On 26.01.2018 01:41, Ben Bolker wrote: tl;dr is the R bug tracker down or am I being an idiot? Help please ... I decided I would follow up on https://stat.ethz.ch/pipermail/r-devel/2018-January/075410.html (reporting/suggesting a pat

Re: [Rd] R CMD check warning about compiler warning flags

2018-01-03 Thread Uwe Ligges
with each commit (With the possibility to reverse changes), and not verbose e-mails. That works well with svn, and we have the sequential labels which are e.g. important for bisecting changes. I do not see how I can find this out with git easily. Best, Uwe Ligges Juan I strongly disagree

Re: [Rd] Typos in ?regex

2017-12-29 Thread Uwe Ligges
Thanks, fixed in R-devel and R-patched. Best, Uwe Ligges On 22.12.2017 15:28, Korpela Mikko (MML) wrote: I found three little typos in the ?regex manual. Apologies for the lack of a diff, as the utility is not (yet) installed on this machine. 1. "There is a also" should probably

[Rd] CRAN submission queue closes from Dec 22 to Jan 3

2017-12-10 Thread Uwe Ligges
Dear package developers, the CRAN submission queue closes and will be offline from Dec 22 to Jan 3 due to CRAN team vacations and maintainance work on the CRAN check farm. Best, Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch

Re: [Rd] [R-pkg-devel] package check fail on Windows-release only?

2017-11-21 Thread Uwe Ligges
*could* be this is all just a temporary problem aka "race situation" , where the check of your package very unhappily happened exactly at a moment where the new Matrix package was already there, but not quite seems quite improbable, but then your problem seems "rare".. Perf

[Rd] CRAN incoming checks / winbuilder on demand results for R-devel

2017-09-13 Thread Uwe Ligges
Dear package developers, given some very recent changes in R-devel, many packages under R-devel have to be reinstalled. Due to maintainance work on CRAN we probably won't process submissions today. R-devel results from winbuilder will be flaky at least during the next 10 hours. Best

Re: [Rd] Separate packages per windows subarch in repository

2017-07-20 Thread Uwe Ligges
appropriate Makefile.win should be used. Best, Uwe Ligges 2. Have separate versions of the packages accessible in the same repository for each subarch, e.g. bin/windows/contrib/3.4/i386 Could I do thew first via a configure.win script? Is the second option possible? Any pointers to the

Re: [Rd] write.csv

2017-07-12 Thread Uwe Ligges
conditional on availability of admin permissions and an OS that supports it, please. Best, Uwe Nathan -Original Message- From: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] Sent: Tuesday, July 11, 2017 5:09 AM To: Nathan Sosnovske ; Duncan Murdoch ; Jim Hester Cc: r-devel@r

Re: [Rd] write.csv

2017-07-11 Thread Uwe Ligges
This is a bit difficult: R binaries (both for R base and R packages) are still built with Windows Server 2008 and my desktop machine is Windows 7, hence at least currently such a check would not get executed on the machines R core / CRAN use ... Best, Uwe On 11.07.2017 00:59, Nathan Sosnovs

Re: [Rd] Are you considering the possibility of partnership?

2017-07-03 Thread Uwe Ligges
Plese stop this. Best, Uwe Ligges On 03.07.2017 11:29, Keira Cohen wrote: Hi, I've sent you partnership offer via e-mail several days ago. Did you receive it? Are you interested in placing ads on your site? Best regards, Keira On Fri, Jun 30, 2017 at 11:10 AM, Keira Cohen wrote:

Re: [Rd] Windows iconv() "failure" in certain locales

2017-06-29 Thread Uwe Ligges
On 29.06.2017 12:27, Martin Maechler wrote: Uwe Ligges on Wed, 28 Jun 2017 18:45:59 +0200 writes: > On 27.06.2017 17:36, Martin Maechler wrote: >> This is a continuation of the R-devel thread with subject >> "suggestion to fix packageDescription

Re: [Rd] Windows iconv() "failure" in certain locales

2017-06-28 Thread Uwe Ligges
On 27.06.2017 17:36, Martin Maechler wrote: This is a continuation of the R-devel thread with subject "suggestion to fix packageDescription() for Windows users" : As I said there, a patch should rather address the underlying problem in packageDescription rather than a kludgy workaround patch

Re: [Rd] duplicated factor labels.

2017-06-23 Thread Uwe Ligges
On 23.06.2017 11:51, peter dalgaard wrote: Hmm, the danger in this is that duplicated factor levels _used_ to be allowed (i.e. multiple codes with the same level). Disallowing it is what broke read.spss() on some files, because SPSS's concept of value labels is not 1-to-1 with factors. Real

Re: [Rd] Unexpected behaviour of base::qr()$rank

2017-06-22 Thread Uwe Ligges
On 22.06.2017 20:09, Iñaki Úcar wrote: 2017-06-22 19:49 GMT+02:00 Uwe Ligges : On 22.06.2017 17:11, Bernd Funovits wrote: Hello, I experienced some unexpected behaviour while determining the rank of matrices (sometimes 1x1 matrices): base::qr(matrix(1e-20))$rank returns 1 (incorrect) base

Re: [Rd] Unexpected behaviour of base::qr()$rank

2017-06-22 Thread Uwe Ligges
incorrect? 0 != 1e-20 and 1e-20 is well representable without significant rounding errors given > .Machine$double.xmin [1] 2.225074e-308 Best, Uwe Ligges Best regards, Bernd > R.version _ platform x86_64-w64-mingw32 arch x86_64 os m

Re: [Rd] read.table

2017-06-04 Thread Uwe Ligges
o works if any line contains only a singe double (") quote. Yes, you do not use the ' as a quote, hence you have to remove it from the default setting of its meaning as a quote Best, Uwe Ligges Thanks, Jing hua [[alternative HTML v

Re: [Rd] Author email addresses

2017-04-10 Thread Uwe Ligges
The old mail addresses will not result in check errors ( but perhaps should?). Please try to keep them current. Most important: Please updates all packages' maintaoiner address early enough and submit new versions to CRAN before the old address expires. Best, Uwe Ligges On 10.04.20

Re: [Rd] Very hard to reproduce bug (?) in R-devel

2017-04-05 Thread Uwe Ligges
is is just stating the obvious, but let me try and put some general ideas on the table. - is anything non-deterministic involved? (Doesn't sound so, but...) - could it be something with the bytecompiler? Also my suspicion, can you try without having JIT enabled? Best, Uwe Ligges

Re: [Rd] Error "Warning in read_symbols_from_dll(so, rarch): this requires 'objdump.exe' to be on the PATH

2017-03-21 Thread Uwe Ligges
error. Does someone know how to fix that? Yes: Put objdump.exe on the PATH, that executable is part of gcc and in its bin directoy. Best, Uwe Ligges Thank you very much for your help. Christophe __ R-devel@r-project.org mailing list https://

Re: [Rd] Hyperbolic tangent different results on Windows and Mac

2017-03-21 Thread Uwe Ligges
cc 4.6.3 (March 2012) toolchain, whereas "R-devel", the upcoming (not yet released!) R 3.4.z series uses the gcc 4.9.3 (June 2015) toolchain. Actually the R-3.3.z series already uses gcc-4.9.3. Best, Uwe Ligges According to Ben Bolker's comment on SO, the bug in glibc should h

Re: [Rd] . Possible issue with R-tools on Windows

2017-03-12 Thread Uwe Ligges
and everything worked. Well, The toolkchain is now split into two parts, one for 32-bit, one for 64-bit. So we have 2 versions of gcc and freinds, this is set in files .../etc/x64/Makeconf and .../etc/i386/Makeconf respectively in the variable BINPREF. Best, Uwe Ligges Hope this helps.

Re: [Rd] Possible issue with R-tools on Windows

2017-03-12 Thread Uwe Ligges
ed source packages are in ‘d:\temp\RtmpKaYI2t\downloaded_packages’ So we really need the full log. Can you please run the installation from the OS shell, i.e. something like: R CMD INSTALL --library=c:/tmp GO.db_3.4.0.tar.gz and send us the install.log Best, Uwe Ligges On 11.03.2017 18:17, Rober

Re: [Rd] unlicense

2017-01-17 Thread Uwe Ligges
m at and will work more or less globally, i.e. not only in the US? Best, Uwe Thanks, Karl On Sat, Jan 14, 2017 at 12:10 AM, Uwe Ligges wrote: Dear all, from "Writing R Extensions": The string ‘Unlimited’, meaning that there are no restrictions on distribution or use other th

Re: [Rd] unlicense

2017-01-14 Thread Uwe Ligges
” is not a valid license, since it is not recognized in some jurisdictions." So perhaps you aim for License: Unlimited Best, Uwe Ligges On 14.01.2017 07:53, Deepayan Sarkar wrote: On Sat, Jan 14, 2017 at 5:49 AM, Duncan Murdoch wrote: On 13/01/2017 3:21 PM, Charles Geyer wrote: I

Re: [Rd] R CMD check --as-cran: sslv3 alert handshake failure

2016-11-07 Thread Uwe Ligges
On 07.11.2016 22:43, Henrik Bengtsson wrote: On R 3.2.5, 3.3.2 and devel for Windows, R CMD check --as-cran gives me: Found the following (possibly) invalid URLs: URL: https://www.stat.auckland.ac.nz/~paul/Reports/DisplayList/dl-record.html From: man/capturePlot.Rd Status: Error

Re: [Rd] winbuilder down

2016-09-30 Thread Uwe Ligges
On 29.09.2016 22:57, Uwe Ligges wrote: Dear all, winbuilder is down. Given current inspection results and circumstances, I expect a downtime of *at least* 24 hours. This applies to on-demand check services, CRAN check service results and CRAN binary builds for Windows. Best, Uwe Ligges

[Rd] winbuilder down

2016-09-29 Thread Uwe Ligges
Dear all, winbuilder is down. Given current inspection results and circumstances, I expect a downtime of *at least* 24 hours. This applies to on-demand check services, CRAN check service results and CRAN binary builds for Windows. Best, Uwe Ligges

Re: [Rd] ifelse() woes ... can we agree on a ifelse2() ?

2016-08-07 Thread Uwe Ligges
On 06.08.2016 17:30, Duncan Murdoch wrote: On 06/08/2016 10:18 AM, Martin Maechler wrote: Dear R-devel readers, ( = people interested in the improvement and development of R). This is not the first time that this topic is raised. and I am in now state to promise that anything will result from

Re: [Rd] cat() in system.time() ?

2016-07-17 Thread Uwe Ligges
On 17.07.2016 18:13, luke-tier...@uiowa.edu wrote: On Fri, 15 Jul 2016, Martin Maechler wrote: Hi Ben (and everyone else), as this did not attract attention yet, let me start Ben Bolker on Mon, 4 Jul 2016 11:49:40 -0400 writes: > Does anyone know if there's a reason that proc.tim

Re: [Rd] R process killed when allocating too large matrix (Mac OS X)

2016-05-05 Thread Uwe Ligges
On 05.05.2016 04:25, Marius Hofert wrote: Hi Simon, ... all interesting (but quite a bit above my head). I only read 'Linux' and want to throw in that this problem does not appear on Linux (it seems). I talked about this with Martin Maechler and he reported that the same example (on one of his

Re: [Rd] Building R-patched and R-devel fails

2016-04-17 Thread Uwe Ligges
On 17.04.2016 11:01, Prof Brian Ripley wrote: On 17/04/2016 07:25, Berwin A Turlach wrote: G'day all, probably you have noticed this by now, but I thought I ought to report it. :) Already fixed for Unix by the time this reached me. Since that version of Survival has been put into 3.2 patch

Re: [Rd] default destfile in download.file()

2016-02-19 Thread Uwe Ligges
: download.file("https://svn.r-project.org/R/trunk/doc/CRAN_mirrors.csv";) mirrors <- read.csv("CRAN_mirrors.csv") This contradicts our approach not to overwrite files in the user filespace that are not explicitly mentioned as an argument. Best, Uwe Ligges [[alternati

Re: [Rd] something wrong in package submission procedure/website

2016-02-08 Thread Uwe Ligges
On 08.02.2016 16:19, peter dalgaard wrote: Quite possibly, I should keep my big mouth shut and let the CRAN'ers answer this, but at face value, you submit a new version and are asked to confirm that problems with the previous version are fixed; isn't that as it should be? From a CRAN'ers po

Re: [Rd] corrupt PACKAGES.gz?

2015-11-07 Thread Uwe Ligges
Bill, thanks for reporting, this is currently true for all PACKAGES.gz files my autobuilder is creating, will investigate. Best, Uwe On 06.11.2015 18:54, William Dunlap wrote: Is it just me, or did a corrupt PACKAGES.gz file get installed in the bin/windows/contrib/3.2 directory of CRAN mir

Re: [Rd] A where() functions that does what exists() does but return the environment when object lives?

2015-10-13 Thread Uwe Ligges
On 13.10.2015 22:39, Henrik Bengtsson wrote: On Sat, Oct 10, 2015 at 1:24 AM, Uwe Ligges wrote: I'd start looking at getAnywhere(). Thanks Uwe, that does indeed provides "where" information. Unfortunately, I don't see how it will allow me to search environments similar

Re: [Rd] A where() functions that does what exists() does but return the environment when object lives?

2015-10-10 Thread Uwe Ligges
I'd start looking at getAnywhere(). Best, Uwe On 10.10.2015 01:18, Henrik Bengtsson wrote: Hi, exists("foo", inherits=TRUE) check whether an object named "foo" exists, and get("foo", inherits=TRUE) retrieves it. I'm looking for a similar function to exists() that returns the environment where

Re: [Rd] authorship and citation

2015-10-05 Thread Uwe Ligges
could point to the new one) and the new package, citing the previous version appropriately, is by a single author. No, copyright remains. You can fork given the license permits it, but there are still the same copyright holders ... Best, Uwe Ligges The page of CRAN's policies doesn&#

Re: [Rd] authorship and citation

2015-10-05 Thread Uwe Ligges
talk about a CRAN package). I am not a lawyer, hence I cannot speak for copyright/license stuff in general, hence my comments only about CRAN policies. Best, Uwe Ligges On 05.10.2015 23:02, Adrian Dușa wrote: Dear R developers, This is a rather peculiar question, but nevertheless I would

Re: [Rd] download.file() on ftp URL fails in windows with default download method

2015-08-08 Thread Uwe Ligges
d I have not got problems on those. Can someone else rerpoduce this on Windows Server 2012? Best, Uwe Ligges Dan sessionInfo() R version 3.2.2 beta (2015-08-05 r68859) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows Server 2012 x64 (build 9200) locale: [1] LC_COLLATE=E

Re: [Rd] Installing/updating packages on a lab network

2015-07-29 Thread Uwe Ligges
On 29.07.2015 17:11, Michael Friendly wrote: On 7/28/2015 1:32 PM, Uwe Ligges wrote: Just add the line R_LIBS_SITE=F:/R/library to the file R_HOME/etc/x64/Renviron.site Thanks, Uwe I have no way to test this and our IT people who do the installation know nothing of R, so follow-up

Re: [Rd] Installing/updating packages on a lab network

2015-07-28 Thread Uwe Ligges
Just add the line R_LIBS_SITE=F:/R/library to the file R_HOME/etc/x64/Renviron.site Best, Uwe Ligges On 28.07.2015 15:53, Michael Friendly wrote: I'm the faculty member in my department who advises our IT staff on the details of installing R for students and faculty on our Windows

Re: [Rd] Are downstream dependencies rebuilt when a package is updated on CRAN?

2015-07-02 Thread Uwe Ligges
Winston, see far below. ;-) On 03.07.2015 06:36, Winston Chang wrote: I was wondering: are the downstream dependencies of a package rebuilt when a package is updated on CRAN? (I'm referring to the binary packages, of course.) The reason I ask is because there are cases where this can cause p

Re: [Rd] MetaCran website v1.0.0-alpha

2015-05-25 Thread Uwe Ligges
On 25.05.2015 02:29, Gábor Csárdi wrote: On Sun, May 24, 2015 at 7:40 PM, Uwe Ligges mailto:lig...@statistik.tu-dortmund.de>> wrote: Thanks for letting us know about the new website. Some comments: - Download statistics: Where are they from? CRAN does not monitor dow

Re: [Rd] MetaCran website v1.0.0-alpha

2015-05-24 Thread Uwe Ligges
ran.r-project.org/mirrors.html when pointing to CRAN. Best, Uwe Ligges On 24.05.2015 11:44, Rainer M Krug wrote: Gábor Csárdi writes: Dear All, [ I was wondering if this should have gone to the new mailing list. Maybe. ] As some of you maybe know from my earlier posts, I am building a simpl

Re: [Rd] That 'make check-all' problem with the survival package

2015-05-16 Thread Uwe Ligges
Not sure why this goes to R-devel. You just could have asked the maintainer. Terry Therneau is aware of it and promised he will fix it. Best, Uwe Ligges On 16.05.2015 07:22, Hin-Tak Leung wrote: 'make check-all' for current R has been showing this error in the middle for a few

Re: [Rd] Package check error: cannot extract package

2015-05-07 Thread Uwe Ligges
, or if not)? 3. How can I fix this? By telling us. :-) Seems to be a hicc up of the CRAN machine that builds the bianries. Will work on it. Should be resolved within a day or so. Best, Uwe Ligges Thanks Sören __ R-devel@r-project.org mailing list

Re: [Rd] CRAN submit page down

2015-04-26 Thread Uwe Ligges
r the inconvenience and best wishes, Uwe Ligges Bill On Apr 23, 2015, at 2:52 PM, Dirk Eddelbuettel wrote: Andrie noticed that first, and I can confirm: from our end, it looks as if the backend to http://cran.r-project.org/submit.html is currently down. Dirk -- http://dirk.eddelbuette

Re: [Rd] Title case in DESCRIPTION for package where a word is a function name

2015-04-24 Thread Uwe Ligges
t think anyone else can guess very accurately ... From WRE: "Refer to other packages and external software in single quotes, and to book titles (and similar) in double quotes." Other non-English usage (as documented for the Description field; this inlcudes function names) can also be u

Re: [Rd] Small typo in german translation

2015-02-16 Thread Uwe Ligges
Please send comments related to transaltions to the corresponding translation teams: http://developer.r-project.org/TranslationTeams.html In this case I am CCIng Detlef Steuer. Best, Uwe Ligges On 16.02.2015 09:29, Rainer Hurling wrote: Dear developers, I found a small typo in the german

Re: [Rd] Imports problem

2015-02-16 Thread Uwe Ligges
On 16.02.2015 14:35, Duncan Murdoch wrote: On 16/02/2015 8:20 AM, Therneau, Terry M., Ph.D. wrote: > I'm testing out a new version of coxme and R CMD check fails with "could not find function > ranef" (or random.effects or fixef, or anything from nlme). The NAMESPACE file has t

Re: [Rd] libcurl support and curlGetHeaders warning message in R CMD check

2015-02-01 Thread Uwe Ligges
is rather new and may have changed the days before you wrote. Best, Uwe Ligges best, -skye __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.o

Re: [Rd] r-release, r-oldrel

2014-11-06 Thread Uwe Ligges
On 06.11.2014 23:41, Gábor Csárdi wrote: On Thu, Nov 6, 2014 at 5:36 PM, Uwe Ligges wrote: [...] quick question. How does one know which R versions r-release The latest official release, i.e. currently R-3.1.2. Thanks! How does one know what is the latest official release? Is parsing

Re: [Rd] r-release, r-oldrel

2014-11-06 Thread Uwe Ligges
.3. Best, Uwe Ligges correspond to? Is there a prefered way to determine this programmatically? So far I could only find messy ways, like parsing the HTML of the homepage, or (for r-release) checking the latest R-x-x-x tag in the SVN. The SVN is actually not bad, but how about r-oldrel? Is t

Re: [Rd] Building R package: “Found 'rand', possibly from 'rand' (C)” NOTE when checking package

2014-11-02 Thread Uwe Ligges
I "call entry points which might terminate R" or "write to stdout/stderr", but then, if I remove the calls to rand/srand, this message disappears. Which version of R on your workstation? Your code should also not call the C RNG (rand and srand) as the message clearly states.

Re: [Rd] R 3.1.1 and 3.1.2 both fail their test suites

2014-11-01 Thread Uwe Ligges
a build that's configured with '--without-recommended-packages'? Of course this fails in the case when we check for the recommended packages: | < character(0) | --- | > [1] "Matrix" "nlme" "mgcv" If Matrix et al are not there, they can't be

Re: [Rd] R 3.1.1 and 3.1.2 both fail their test suites

2014-11-01 Thread Uwe Ligges
Nobody in R core runs NixOS and can reproduce this. This passes on most other platforms, apparently. If you can point us to a problem or send patches, we'd appreciate it. Best, Uwe Ligges On 01.11.2014 13:30, Peter Simons wrote: Hi, I maintain the R packages in the NixOS Linux distrib

Re: [Rd] Using Rtools with gcc 4.8.3

2014-10-05 Thread Uwe Ligges
compiler? In addition: will I be able to publish this package to CRAN, or do I have to wait for Rtools to get updated with a more recent gcc? Currently only 4.6.3 is supported and that is the one used to build binary packages on CRAN. Hence you need to wait until it is updated. Best, Uwe Li

Re: [Rd] Looking for new maintainer of orphans R2HTML SemiPar cghseg hexbin lgtdl monreg muhaz operators pamr

2014-09-09 Thread Uwe Ligges
On 09.09.2014 17:01, Hodgess, Erin wrote: I'll do R2HTML, please. Thanks, but a new version with new maintainer is on CRAN already. Best, Uwe Ligges Thanks, Erin From: r-devel-boun...@r-project.org [r-devel-boun...@r-project.org] on behal

Re: [Rd] Looking for new maintainer of orphans R2HTML SemiPar cghseg hexbin lgtdl monreg muhaz operators pamr

2014-09-09 Thread Uwe Ligges
On 09.09.2014 09:52, Luca Sartore wrote: Dear all, I will pick up monreg. Please try to coordinate efforts with Scott Kostyshak who offered the same thing yesterday. Best, Uwe Ligges Best regards, Luca Sartore 2014-09-08 1:03 GMT+02:00 Uwe Ligges : On 08.09.2014 01:01, Gregory

Re: [Rd] r wiki

2014-09-08 Thread Uwe Ligges
(Prof. Philippe Grosjean ) ) ) ) ) ( ( ( ( (Numerical Ecology of Aquatic Systems ) ) ) ) ) Mons University, Belgium ( ( ( ( ( .. On 06 Sep 2014, at 17:28, Uwe Ligges wrote: Rather than asking here, I'd ask Philippe

Re: [Rd] Looking for new maintainer of orphans R2HTML SemiPar cghseg hexbin lgtdl monreg muhaz operators pamr

2014-09-07 Thread Uwe Ligges
On 08.09.2014 01:01, Gregory R. Warnes wrote: And I’ll pick up hexbin. Err, that one has been adopted a month ago already. open are: SemiPar cghseg monreg Best, Uwe Ligges -Greg On Sep 7, 2014, at 12:17 PM, Romain Francois wrote: I'll pick up operators. Le 7 sept. 2014 à

Re: [Rd] Looking for new maintainer of orphans R2HTML SemiPar cghseg hexbin lgtdl monreg muhaz operators pamr

2014-09-07 Thread Uwe Ligges
On 05.09.2014 20:25, Greg Snow wrote: Uwe, Have all of these packages found new maintainers? if not, which ones are still looking to be adopted? Thanks for asking, the ones still looking to be adaopted are: SemiPar cghseg monreg operators Best, Uwe Ligges thanks, On Fri, Aug 8, 2014

Re: [Rd] normalizePath is sometimes very slow for nonexistent UNC paths

2014-09-07 Thread Uwe Ligges
ng for responses. Hence you run into timeouts. If the cached result says some does not exist, you are quick... Best, Uwe Ligges Please can a few people run this code and see if they can reproduce the issue. It isn't clear to me whether this is a bug in R or an underlying OS or network pr

Re: [Rd] r wiki

2014-09-06 Thread Uwe Ligges
Rather than asking here, I'd ask Philippe Grosjean directly, hence CCIng. Best, Uwe Ligges On 06.09.2014 01:17, André Z. D. A. wrote: This does not answer you, but if you are looking for something that existed on that wiki, it may help: https://web.archive.org/web/20140112055032

Re: [Rd] 'library(ggplot2)' R CMD check WARNING in vignette R code

2014-09-03 Thread Uwe Ligges
cy such as "Suggestes" on ggplot2. Best, Uwe Ligges Thank you, Sven. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list http

Re: [Rd] Re R CMD check checking in development version of R

2014-08-27 Thread Uwe Ligges
I am happy to be re-educated on this though :-) If you like, you can fill the search path with lots of packages (and make masking of functions more likely), but you shoudl really import into your namesoace so that unanticipated order of packages in your search path won't break your

Re: [Rd] Is using devtools::release no longer allowed?

2014-08-19 Thread Uwe Ligges
On 20.08.2014 00:05, Jeroen Ooms wrote: On Tue, Aug 19, 2014 at 8:14 PM, Dirk Eddelbuettel wrote: I hereby offer one beer to the first person who shows me how to use RSelenium to drive the webform from a script. Below is a simple script that simulates the form. No crazy RSelenium browser i

Re: [Rd] Is using devtools::release no longer allowed?

2014-08-19 Thread Uwe Ligges
se. Thank you and best wishes, Uwe Ligges Duncan Murdoch __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Looking for new maintainer of orphans R2HTML SemiPar cghseg hexbin lgtdl monreg muhaz operators pamr

2014-08-12 Thread Uwe Ligges
und a volunteer taking over maintainership for pamr. Best, Uwe Thanks again, Max On 8/8/14 12:41 PM, "Uwe Ligges" wrote: Dear maintainers and R-devel, Several orphaned CRAN packages are about to be archived due to outstanding QC problems, but have CRAN and BioC packages dependin

[Rd] Looking for new maintainer of orphans R2HTML SemiPar cghseg hexbin lgtdl monreg muhaz operators pamr

2014-08-08 Thread Uwe Ligges
http://CRAN.R-project.org/package=monreg> <http://CRAN.R-project.org/package=muhaz> <http://CRAN.R-project.org/package=operators> <http://CRAN.R-project.org/package=pamr> for information on the QC issues and the reverse dependencies. Best wishes, Uwe Ligges (for the CRAN t

Re: [Rd] reserving a package name

2014-07-11 Thread Uwe Ligges
On 11.07.2014 13:35, Spencer Graves wrote: On 7/11/2014 1:48 AM, Adrian Dușa wrote: On Fri, Jul 11, 2014 at 1:59 AM, Uwe Ligges wrote: On 10.07.2014 23:46, Adrian Dușa wrote: Dear All, [...] Well, you cannot reserve a package name. Actually you can choose any legal name. The story is

Re: [Rd] reserving a package name

2014-07-10 Thread Uwe Ligges
example. And yes, it works on n a first come, first served basis there. Best, Uwe Ligges Thanks in advance for any answer, Adrian __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Listing Packages in Depends or Imports

2014-06-27 Thread Uwe Ligges
‘Depends’ should also be imported from in the NAMESPACE file Right. In the DESCRIPTION file, you should try to be in "Imports" only, but even you have to declare in "Depends", you still need to import with appropriate directives in the NAMESPACE file

Re: [Rd] Building source package in Windows, error in .doLoadActions()

2014-06-05 Thread Uwe Ligges
inux. I'm using R 3.1.0; Rcpp 0.11.1 installed from CRAN; Cygwin with g++ 4.8.3. cygwin is an unsuported platform, please use the Rtools collection that includes a version of gcc that works out of the box. Best, Uwe Ligges Details about the problem are below. I can provide more details t

Re: [Rd] Authors@R: and Author field

2014-05-02 Thread Uwe Ligges
[aut, cre], foo1 foo2 [ctb] The 'Author' field *must be the same* as the string generated by R from 'Authors@R'. is not working if the Author field is empty or missing it will give an error Actually, you can drop the 'Author' field .. which is generated fro

Re: [Rd] [RFC] A case for freezing CRAN

2014-03-20 Thread Uwe Ligges
ity point of view to get random package versions. For example if some people try to use R-2.13.2 today to reproduce an analysis that was published 2 years ago, they'll get Matrix 1.0-4 on Windows, Matrix 1.0-3 on Mac, and Matrix 1.1-2-2 on Unix. Not true, since Matrix 1.1-2-

Re: [Rd] Maintainer NOTE in R CMD Check

2014-03-09 Thread Uwe Ligges
a Note that reminds CRAN maintainers to check that the submission comes actually from his maintainer and not anybody else. Best, Uwe Ligges where A and B are middle initials. I can change to a 'firstname lastname' form or 'INITS lastname' form and that removes the above Note*

Re: [Rd] no objects apparent in built package

2014-02-13 Thread Uwe Ligges
on is concerned, there is nothing in the package. Check the NAMESPACE file? Can you really source all functions? Otehrwise, please make the package available. Best, Uwe Ligges This is being done in RStudio on Windows with R version 3.0.2. The package used to work. There was a very mino

Re: [Rd] No repository set, so cyclic dependency check skipped

2014-01-26 Thread Uwe Ligges
On 26.01.2014 18:48, Paul Gilbert wrote: On 01/26/2014 12:31 PM, Uwe Ligges wrote: On 26.01.2014 17:52, Paul Gilbert wrote: When checking a package I am getting * checking package dependencies ... NOTE No repository set, so cyclic dependency check skipped How/where do I set the

Re: [Rd] No repository set, so cyclic dependency check skipped

2014-01-26 Thread Uwe Ligges
.) in your .Rprofile. Best, Uwe Ligges No doubt this is explained in Writing R Extension, but I have not found it. Paul __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel ___

Re: [Rd] package NAMESPACE question

2014-01-25 Thread Uwe Ligges
FUN2. After building the package when I call | FUN1 is giving me an error that cannot find FUN2. Then you are doing something wrong in building, or possibly testing, the package. I guess you have FUN1 in your Workspace and using that rather than the one in your package. Uwe Ligges "

Re: [Rd] file.exists does not like path names ending in /

2014-01-17 Thread Uwe Ligges
gram Files" is not safe anyway since it is relative to the current drive. Best, Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] typo in help page for log1p

2013-11-09 Thread Uwe Ligges
' there -> they Thanks, fixed, Uwe Ligges Jen sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8LC_ME

Re: [Rd] R-3.0.2 - Win7_64 - alone_decoder.c: Permission denied error

2013-10-03 Thread Uwe Ligges
ay I do to correct the error? Well, there is a Windows binary for 3.0.2 on CRAN and we had no problems to build it. So probably the problem is on your end. Best, Uwe Ligges Thank you very much, Avraham Adler __ R-devel@r-project.org mailing

Re: [Rd] Including R code from another package...

2013-10-03 Thread Uwe Ligges
make sure that your license is compatible. Indeed. Uwe Ligges On Thu, Oct 3, 2013 at 1:27 PM, Jonathan Greenberg wrote: R-developers: I had a quick question for the group -- let's say a package I am developing depends on a single, small function from a large CRAN-listed package. I ca

Re: [Rd] declaring package dependencies

2013-09-16 Thread Uwe Ligges
e version is on CRAN already (i.e. if the version became a CRAN package). Best, Uwe Ligges Göran Duncan Murdoch Göran winbuilder's R-devel seems to be built daily, saving me the time. Since I don't have Windows it kills two birds with one stone. It has caught many proble

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