Re: [Rd] Question regarding .make_numeric_version with non-character input

On 4/25/24 07:04, Kurt Hornik wrote: ... > Sure, I'll look into adding something. (Too late for 4.4.0, of course.) > > Best > -k Great. Thanks! H. -- Hervé Pagès Bioconductor Core Team hpages.on.git...@gmail.com [[alternative HTML version deleted]]

Re: [Rd] Question regarding .make_numeric_version with non-character input

> Hervé Pagès writes: > On 4/24/24 23:07, Kurt Hornik wrote: >>> Hervé Pagès writes: >>> Hi Kurt, >>> Is it intended that numeric_version() returns an error by default on >>> non-character input in R 4.4.0? >> Dear Herve, yes, that's the intention. >> >>> It seems that I can turn this

Re: [Rd] Question regarding .make_numeric_version with non-character input

> Dirk Eddelbuettel writes: > Hi Kurt, > On 25 April 2024 at 08:07, Kurt Hornik wrote: > | > Hervé Pagès writes: > | > | > Hi Kurt, > | > Is it intended that numeric_version() returns an error by default on > | > non-character input in R 4.4.0? > | > | Dear Herve, yes, that's the

Re: [Rd] Question regarding .make_numeric_version with non-character input

Hi Kurt, On 25 April 2024 at 08:07, Kurt Hornik wrote: | > Hervé Pagès writes: | | > Hi Kurt, | > Is it intended that numeric_version() returns an error by default on | > non-character input in R 4.4.0? | | Dear Herve, yes, that's the intention. | | > It seems that I can turn this into

Re: [Rd] Question regarding .make_numeric_version with non-character input

On 4/24/24 23:07, Kurt Hornik wrote: >> Hervé Pagès writes: >> Hi Kurt, >> Is it intended that numeric_version() returns an error by default on >> non-character input in R 4.4.0? > Dear Herve, yes, that's the intention. > >> It seems that I can turn this into a warning by setting >>

Re: [Rd] Question regarding .make_numeric_version with non-character input

> Hervé Pagès writes: > Hi Kurt, > Is it intended that numeric_version() returns an error by default on > non-character input in R 4.4.0? Dear Herve, yes, that's the intention. > It seems that I can turn this into a warning by setting >

Re: [Rd] Question regarding .make_numeric_version with non-character input

Hi Kurt, Is it intended that numeric_version() returns an error by default on non-character input in R 4.4.0? It seems that I can turn this into a warning by setting _R_CHECK_STOP_ON_INVALID_NUMERIC_VERSION_INPUTS_=false but I don't seem to be able to find any of this mentioned in the NEWS

Re: [Rd] Question regarding .make_numeric_version with non-character input

> Andrea Gilardi via R-devel writes: Thanks: should be fixed now in the trunk. Best -k > Thank you very much Dirk for your kind words and for confirming the bug. > Next week I will open a new issue on Bugzilla adding the related patch. > Kind regards > Andrea > On 29/03/2024 20:14, Dirk

Re: [Rd] Question regarding .make_numeric_version with non-character input

Thank you very much Dirk for your kind words and for confirming the bug. Next week I will open a new issue on Bugzilla adding the related patch. Kind regards Andrea On 29/03/2024 20:14, Dirk Eddelbuettel wrote: On 29 March 2024 at 17:56, Andrea Gilardi via R-devel wrote: | Dear all, | | I

Re: [Rd] Question regarding .make_numeric_version with non-character input

On 29 March 2024 at 17:56, Andrea Gilardi via R-devel wrote: | Dear all, | | I have a question regarding the R-devel version of .make_numeric_version() function. As far as I can understand, the current code

[Rd] Question regarding .make_numeric_version with non-character input

Dear all, I have a question regarding the R-devel version of .make_numeric_version() function. As far as I can understand, the current code (https://github.com/wch/r-source/blob/66b91578dfc85140968f07dd4e72d8cb8a54f4c6/src/library/base/R/version.R#L50-L56) runs the following steps in case of

Re: [Rd] question about an R idiom: eval()ing a quoted block

In the case of power.t.test, there is a situation where you want to create 4 different functions with the same function body, in order to pass them to uniroot(). I think that at the time, it just seemed convenient to express that idea with a quote-eval (macro-like) construction, rather than

Re: [Rd] question about an R idiom: eval()ing a quoted block

On 11/07/2023 6:01 p.m., Ben Bolker wrote: In a few places in the R source code, such as the $initialize element of `family` objects, and in the body of power.t.test() (possibly other power.* functions), sets of instructions that will need to be run later are encapsulated by saving them as

[Rd] question about an R idiom: eval()ing a quoted block

In a few places in the R source code, such as the $initialize element of `family` objects, and in the body of power.t.test() (possibly other power.* functions), sets of instructions that will need to be run later are encapsulated by saving them as an expression and later applying eval(),

Re: [Rd] Question on non-blocking socket

Ben, yes, by definition - non-blocking means that reads won't block and always return immediately (the point of non-blocking). The loop below is terrible as it will cause 100% CPU usage while it's spinning. It seems that you want to block so why are you using non-blocking mode? select()

Re: [Rd] Question on non-blocking socket

Hi Tomas, Apparently, inserting some kind of socketSelect() is essential when using non-blocking sockets and a client/erve architecture. That is at least one thing that I have learned ;-). In C++, between sending and requesting, I inserted a call to this function: bool wait(int s) { fd_set

Re: [Rd] Question on non-blocking socket

> Date: Wed, 15 Feb 2023 01:24:26 +0100 > From: Ben Engbers > To: r-devel@r-project.org > Subject: [Rd] Question on non-blocking socket > Message-ID: <68ce63b0-7e91-6372-6926-59f3fcfff...@be-logical.nl> > Content-Type: text/plain; charset="utf-8"; Format="fl

Re: [Rd] Question on non-blocking socket

On 2/15/23 16:44, Ben Engbers wrote: Hi Op 15-02-2023 om 14:38 schreef Tomas Kalibera: On 2/15/23 01:24, Ben Engbers wrote: Hi, December 27, 2021 I started a thread asking for help troubleshooting non-blocking sockets. .. I have two questions. The first is where I can find R

Re: [Rd] Question on non-blocking socket

Hi Op 15-02-2023 om 14:38 schreef Tomas Kalibera: On 2/15/23 01:24, Ben Engbers wrote: Hi, December 27, 2021 I started a thread asking for help troubleshooting non-blocking sockets. .. I have two questions. The first is where I can find R documentation on proper use of non-blocking

Re: [Rd] Question on non-blocking socket

В Wed, 15 Feb 2023 01:24:26 +0100 Ben Engbers пишет: > where I can find R documentation on proper use of non-blocking > sockets and on the proper use of the socketSelect function? A useful guide to the Berkeley sockets API can be found at . You'll have to translate

Re: [Rd] Question on non-blocking socket

On 2/15/23 01:24, Ben Engbers wrote: Hi, December 27, 2021 I started a thread asking for help troubleshooting non-blocking sockets. While developing the RBaseX client, I had issues with the authentication process. It eventually turned out that a short break had to be inserted in this

[Rd] Question on non-blocking socket

Hi, December 27, 2021 I started a thread asking for help troubleshooting non-blocking sockets. While developing the RBaseX client, I had issues with the authentication process. It eventually turned out that a short break had to be inserted in this process between sending the credentials to

Re: [Rd] Question about grid.group compositing operators in cairo

Hi This issue has expanded to include the behaviour of compositing operators in R graphics more generally. For the record, the discussion is continuing here ... https://github.com/pmur002/rgraphics-compositing Paul On 4/10/22 09:20, Paul Murrell wrote: Interim update:  I have spoken with

Re: [Rd] Question about grid.group compositing operators in cairo

Interim update: I have spoken with Thomas Lin Pedersen (cc'ed), the author/maintainer of 'ragg' and 'svglite', who is working on adding group support for those graphics devices and he has voted in support of the current Cairo implementation, so the needle has shifted towards Cairo at this

Re: [Rd] Question about grid.group compositing operators in cairo

Hi Some more thoughts ... <1> I said before that currently, dev->group() does this ... [OVER] shape shape shape OP shape shape shape ... and one option would be an implicit group on 'src' and 'dst' like this ... ([OVER] shape shape shape) OP ([OVER] shape shape shape) ... but another

Re: [Rd] Question about grid.group compositing operators in cairo

Hi Would it work to explicitly record a filled-and-stroked shape as two separate elements (one only filled and one only stroked) ? Then it should only be as hard to apply the active operator on both of those elements as it is to apply the active operator to more than one shape (?) Paul

Re: [Rd] Question about grid.group compositing operators in cairo

Thank you for the very thorough explanation Paul. To answer your question on 11: The dsvg device, simply defines svg elements with their attributes (rect with fill & stroke in my examples). It does not do any internal image processing like cairo. My concern is how to proceed with the

Re: [Rd] Question about grid.group compositing operators in cairo

Hi Thanks for the code (and for the previous attachments). Some thoughts so far (HTML version with images attached) ... <1> As you have pointed out, the Cairo device draws a stroked-and-filled shape with two separate drawing operations: the path is filled and then the path is stroked. I do

Re: [Rd] Question about grid.group compositing operators in cairo

Here is the code again in text: src <- rectGrob(2/3, 1/3, width=.6, height=.6, gp=gpar(lwd = 5, fill=rgb(0, 0, 0.9, 0.4))) dst <- rectGrob(1/3, 2/3, width=.6, height=.6, gp=gpar(lwd = 5, fill=rgb(0.7, 0, 0, 0.8))) svg("cairo.in.svg", width = 5, height = 5) grid.group(src, "in", dst)

Re: [Rd] Question about grid.group compositing operators in cairo

Hi, sure I attach the test code and my svg. You can also find my current work on ggiraph in the branch ge15 on github: https://github.com/sigmapi/ggiraph/tree/ge15 Thanks, Panagiotis On 27/9/22 04:44, Paul Murrell wrote: Could you also please send me the SVG code that your device is

Re: [Rd] Question about grid.group compositing operators in cairo

Could you also please send me the SVG code that your device is generating for your example. Thanks! Paul On 27/09/22 08:50, Paul Murrell wrote: Hi Thanks for the report.  It certainly sounds like I have done something stupid :)  For my debugging and testing could you please share the R

Re: [Rd] Question about grid.group compositing operators in cairo

Hi Thanks for the report. It certainly sounds like I have done something stupid :) For my debugging and testing could you please share the R code from your tests ? Thanks! Paul On 26/09/22 10:27, Panagiotis Skintzos wrote: Hello, I'm trying to update ggiraph package in graphic engine

[Rd] Question about grid.group compositing operators in cairo

Hello, I'm trying to update ggiraph package in graphic engine v15 (currently we support up to v14). I've implemented the group operators and when I compare the outputs of ggiraph::dsvg with the outputs of svg/png, I noticed some weird results. Specifically, some operators in cairo (in,

Re: [Rd] Question about the UCRT switch

On 12/9/21 3:30 PM, Therneau, Terry M., Ph.D. via R-devel wrote: The connected blog has the statement  "Most authors will not have to do anything as the number of CRAN packages that will need some attention is below 1%, but authors of packages using native (C, C++ or Fortran) code should

[Rd] Question about the UCRT switch

The connected blog has the statement  "Most authors will not have to do anything as the number of CRAN packages that will need some attention is below 1%, but authors of packages using native (C, C++ or Fortran) code should read the following lines." My packages do use a lot of C, but I never

Re: [Rd] Question about quantile fuzz and GPL license

Martin Maechler wrote: > OTOH, type=7 is the default, and I guess used in 99.9% of > all uses of quantile, *and* does never use any fuzz Indeed. This also implies that this default should be well-thought when creating a new implementation of the quantile() procedure for a new programming

Re: [Rd] Question about quantile fuzz and GPL license

> GILLIBERT, Andre > on Tue, 14 Sep 2021 16:13:05 + writes: > On 9/14/21 9:22 AM, Abel AOUN wrote: >> However I don't get why epsilon is multiplied by 4 instead of simply using epsilon. >> Is there someone who can explain this 4 ? > .Machine$double.eps is the

Re: [Rd] Question about quantile fuzz and GPL license

On 9/14/21 9:22 AM, Abel AOUN wrote: > However I don't get why epsilon is multiplied by 4 instead of simply using > epsilon. > Is there someone who can explain this 4 ? .Machine$double.eps is the "precision" of floating point values for values close to 1.0 (between 0.5 and 2.0). Using fuzz =

Re: [Rd] Question about quantile fuzz and GPL license

On 9/14/21 9:22 AM, Abel AOUN wrote: Hello, I'm currently working on Python numpy package to develop linear interpolation methods for quantiles. Currently, numpy only support the type 7 of Hyndman & Fan and I did the implementation for the 8 other methods to do as much as R ::quantile. As

[Rd] Question about quantile fuzz and GPL license

Hello, I'm currently working on Python numpy package to develop linear interpolation methods for quantiles. Currently, numpy only support the type 7 of Hyndman & Fan and I did the implementation for the 8 other methods to do as much as R ::quantile. As you may guess, I was inspired by R

Re: [Rd] Question about R developpment

Thank you all for these explanations. Kind regards, Morgan On 11 Jun 2017 02:47, "Duncan Murdoch" wrote: > On 10/06/2017 6:09 PM, Duncan Murdoch wrote: > >> On 10/06/2017 2:38 PM, Morgan wrote: >> >>> Hi, >>> >>> I had a question that might not seem obvious to me. >>>

Re: [Rd] Question about R developpment

On 10/06/2017 6:09 PM, Duncan Murdoch wrote: On 10/06/2017 2:38 PM, Morgan wrote: Hi, I had a question that might not seem obvious to me. I was wondering why there was no patnership between microsoft the R core team and eventually other developpers to improve R in one unified version instead

Re: [Rd] Question about R developpment

[mailto:r-devel-boun...@r-project.org] On Behalf Of Martyn Plummer Sent: 10 June 2017 16:06 To: Duncan Murdoch <murdoch.dun...@gmail.com>; Morgan <2005.mor...@gmail.com>; r-devel@r-project.org Subject: Re: [Rd] Question about R developpment I would describe MRO as a distribution of R, in

Re: [Rd] Question about R developpment

From: R-devel <r-devel-boun...@r-project.org> on behalf of Duncan Murdoch <murdoch.dun...@gmail.com> Sent: 11 June 2017 00:09 To: Morgan; r-devel@r-project.org Subject: Re: [Rd] Question about R developpment On 10/06/2017 2:38 PM, Morgan wrote: > Hi, > > I had

Re: [Rd] Question about R developpment

On 10/06/2017 2:38 PM, Morgan wrote: Hi, I had a question that might not seem obvious to me. I was wondering why there was no patnership between microsoft the R core team and eventually other developpers to improve R in one unified version instead of having different teams developping their

Re: [Rd] Question about R developpment

https://www.r-consortium.org -Roy > On Jun 10, 2017, at 11:38 AM, Morgan <2005.mor...@gmail.com> wrote: > > Hi, > > I had a question that might not seem obvious to me. > > I was wondering why there was no patnership between microsoft the R core > team and eventually other developpers to

[Rd] Question about R developpment

Hi, I had a question that might not seem obvious to me. I was wondering why there was no patnership between microsoft the R core team and eventually other developpers to improve R in one unified version instead of having different teams developping their own version of R. Is it because they

[Rd] Question about CHARSXP and garbage collection

Hi, I had a technical question about CHARSXP and garbage collection and couldn't find the answer in the R manual. The question is this. Are CHARSXP garbage collected like any other object, despite being part of the CHARSXP cache? i.e. is the cache being cleaned by garbage collection regularly

Re: [Rd] Question about CHARSXP and garbage collection

They are garbage collected so you do need to protect them in C code. Best, luke On Sat, 13 Feb 2016, Holger Hoefling wrote: Hi, I had a technical question about CHARSXP and garbage collection and couldn't find the answer in the R manual. The question is this. Are CHARSXP garbage collected

Re: [Rd] Question about bug reporting, and the followup process

On 2015-12-16 16:40, Duncan Murdoch wrote: We generally ignore it, so your current practice is fine. The problem is that none of the core developers use AIX, so it's unlikely anyone will be able to test and fix your problems. You'll need to find an AIX expert, or fix them yourself. Duncan

Re: [Rd] Question about bug reporting, and the followup process

On 16/12/2015 12:31 AM, Michael Felt wrote: Hi, I sent in three bug-reports (maybe should have been 4, because the second contains an "enhancement" as well as well as a bug). I do not set "Importance", ever - or, is that the custom here? We generally ignore it, so your current practice is

[Rd] Question about bug reporting, and the followup process

Hi, I sent in three bug-reports (maybe should have been 4, because the second contains an "enhancement" as well as well as a bug). I do not set "Importance", ever - or, is that the custom here? Regards, Michael p.s. - maybe related - is it best practice to add [Rd] in the subject line, or

[Rd] Question: Publishing R/S objects with WebServices (SOAP/WSDL)

Hello, Can anyone tell me if there is a package which will allow me to write a package in R, then publish the package using WebServices? The idea is that I want to be able to pass a data set into R, have R perform the calculations, then send the result back to either a .Net application or a LIMS

Re: [Rd] Question: Publishing R/S objects with WebServices (SOAP/WSDL)

On 22 July 2014 at 07:21, Kurt Schallitz wrote: | Can anyone tell me if there is a package which will allow me to write a | package in R, then publish the package using WebServices? The idea is that | I want to be able to pass a data set into R, have R perform the | calculations, then send the

Re: [Rd] Question: Publishing R/S objects with WebServices (SOAP/WSDL)

: Kurt Schallitz schallitz.k...@gene.com To: r-devel@r-project.org Sent: Tuesday, July 22, 2014 4:21:09 PM Subject: [Rd] Question: Publishing R/S objects with WebServices (SOAP/WSDL) Hello, Can anyone tell me if there is a package which will allow me to write a package in R, then publish

Re: [Rd] Question: Publishing R/S objects with WebServices (SOAP/WSDL)

So far I see many packages that allow R to consume WebServices, but I haven't seen anything that allows you to publish a package as a WebService. If you haven't already, look at the RWebServices package from Bioconductor. __ R-devel@r-project.org

[Rd] Question on Code snippet semantics

I came across this code in library.R package - as.character(substitute(package)) where package is the first argument to the library function. I've been racking my brains to understand why this is not just an elaborate (and ineffcient) way to write: package - package E.g. package -

Re: [Rd] Question on Code snippet semantics

On Jul 21, 2014, at 10:07 AM, Mick Jordan mick.jor...@oracle.com wrote: I came across this code in library.R package - as.character(substitute(package)) where package is the first argument to the library function. I've been racking my brains to understand why this is not just an

Re: [Rd] Question on Code snippet semantics

subsitute(expr), with only one argument, is only useful inside of a function and then only when the expression, expr, involves an argument to the function. Then the unevaluated actual arguments to the function are substituted into the [unevaluated] expression. E.g., f - function(x, y=stop(y

[Rd] Question about fifo behavior on Linux between versions 3.0.3 and 3.1.0

Version 3.1.0 of R has imposed a very small data limit on writing to fifos on Linux. Consider the following R code (Assumes that ff is a fifo in the R process's current directory): con - fifo(ff, a+b) writeBin(raw(12501), con) In R 3.0.3, this returns without error and the data is available on

Re: [Rd] Question about fifo behavior on Linux between versions 3.0.3 and 3.1.0

It _was_ part of the fifo for Windows patch. As if does not seem to be needed for Windows, it has been reverted. On 20/05/2014 16:02, James Smith wrote: Version 3.1.0 of R has imposed a very small data limit on writing to fifos on Linux. Consider the following R code (Assumes that ff is a

[Rd] question about code signing

Greetings! I maintain R SlackBuild for Slackware and derivatives, and it would make me sleep easier if I could verify gpg signatures of the sources I refer to. Is there any way to get the source signed with gpg, by any chance, preferably in tarball form? signature.asc Description: OpenPGP

Re: [Rd] question regarding lang2 command in C

Hi, This is easy if the gender and age are already vectors of some sort of the same size. SEXP df = PROTECT(allocVector(VECSXP, 2)); SET_VECTOR_ELT(df,0,gender) ; SET_VECTOR_ELT(df,1,age) ; SEXP names = PROTECT(allocVector(STRSXP,2)); SET_STRING_ELT(names,0,mkChar(age))

[Rd] question regarding lang2 command in C

Hi , I am asking too many questions , sorry for that . I am creating a data frame in C itself , reading a table . The data frame calling code looks like this == *PROTECT(dfm=lang2(install(data.frame),df));* *SEXP res = PROTECT(eval(dfm,R_GlobalEnv));*

Re: [Rd] Question re: NA, NaNs in R

This isn't quite what you were asking, but might inform your choice. R doesn't try to maintain the distinction between NA and NaN when doing calculations, e.g.: NA + NaN [1] NA NaN + NA [1] NaN So for the aggregate package, I didn't attempt to treat them differently. The aggregate package is

Re: [Rd] Question re: NA, NaNs in R

Thanks Tim, this is exactly the explanation I was hoping to see. Much appreciated! On Mon, Feb 10, 2014 at 7:21 AM, Tim Hesterberg timhesterb...@gmail.com wrote: This isn't quite what you were asking, but might inform your choice. R doesn't try to maintain the distinction between NA and NaN

Re: [Rd] Question re: NA, NaNs in R

On 10/02/2014 10:21 AM, Tim Hesterberg wrote: This isn't quite what you were asking, but might inform your choice. R doesn't try to maintain the distinction between NA and NaN when doing calculations, e.g.: NA + NaN [1] NA NaN + NA [1] NaN So for the aggregate package, I didn't attempt to

Re: [Rd] Question re: NA, NaNs in R

Also, similarly, to clarify, should there be _one_ unique bit pattern for R's NA_REAL, or two? Because I see (for a function hex that produces the hex representation of a number): hex(NA_real_) [1] 7FF007A2 hex(NA_real_+1) [1] 7FF807A2 hex(NaN) [1] 7FF8 This is

Re: [Rd] Question re: NA, NaNs in R

On 10/02/2014 1:43 PM, Kevin Ushey wrote: Also, similarly, to clarify, should there be _one_ unique bit pattern for R's NA_REAL, or two? Because I see (for a function hex that produces the hex representation of a number): I don't think the language definition defines bit patterns, it defines

Re: [Rd] Question re: NA, NaNs in R

On 10/02/2014 1:43 PM, Kevin Ushey wrote: Also, similarly, to clarify, should there be _one_ unique bit pattern for R's NA_REAL, or two? Because I see (for a function hex that produces the hex representation of a number): hex(NA_real_) [1] 7FF007A2 hex(NA_real_+1) [1] 7FF807A2

Re: [Rd] Question re: NA, NaNs in R

On 02/10/14, 19:07 , Duncan Murdoch wrote: On 10/02/2014 10:21 AM, Tim Hesterberg wrote: This isn't quite what you were asking, but might inform your choice. R doesn't try to maintain the distinction between NA and NaN when doing calculations, e.g.: NA + NaN [1] NA NaN + NA [1] NaN

Re: [Rd] Question re: NA, NaNs in R

Hi Duncan, Thanks a ton -- I appreciate your taking the time to investigate this, and especially even checking into the IEEE standard to clarify. Cheers, Kevin On Mon, Feb 10, 2014 at 11:54 AM, Rainer M Krug rai...@krugs.de wrote: On 02/10/14, 19:07 , Duncan Murdoch wrote: On 10/02/2014

[Rd] Question re: NA, NaNs in R

Hi R-devel, I have a question about the differentiation between NA and NaN values as implemented in R. In arithmetic.c, we have int R_IsNA(double x) { if (isnan(x)) { ieee_double y; y.value = x; return (y.word[lw] == 1954); } return 0; } ieee_double is just used for type punning so

Re: [Rd] Question re: NA, NaNs in R

There is one NA but mulitple NaNs. And please re-read 'man memcmp': your cast is wrong. On 10/02/2014 06:52, Kevin Ushey wrote: Hi R-devel, I have a question about the differentiation between NA and NaN values as implemented in R. In arithmetic.c, we have int R_IsNA(double x) { if

[Rd] Question about selective importing of package functions...

I'm working on an update for my CRAN package spatial.tools and I noticed a new warning when running R CMD CHECK --as-cran: * checking CRAN incoming feasibility ... NOTE Maintainer: 'Jonathan Asher Greenberg spatial-to...@estarcion.net' Depends: includes the non-default packages: 'sp' 'raster'

Re: [Rd] Question about selective importing of package functions...

On 13-10-20 4:43 PM, Jonathan Greenberg wrote: I'm working on an update for my CRAN package spatial.tools and I noticed a new warning when running R CMD CHECK --as-cran: * checking CRAN incoming feasibility ... NOTE Maintainer: 'Jonathan Asher Greenberg spatial-to...@estarcion.net' Depends:

Re: [Rd] Question about selective importing of package functions...

Duncan: Thanks -- learning something new today -- quick follow-up, will using the import statements in the NAMESPACE, when a user goes to install.packages(), auto-install the dependent packages the same way Depends forces? --j On Sun, Oct 20, 2013 at 3:49 PM, Duncan Murdoch

Re: [Rd] Question about selective importing of package functions...

On Sun, Oct 20, 2013 at 4:49 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-10-20 4:43 PM, Jonathan Greenberg wrote: I'm working on an update for my CRAN package spatial.tools and I noticed a new warning when running R CMD CHECK --as-cran: * checking CRAN incoming feasibility ...

Re: [Rd] Question about selective importing of package functions...

One more follow-up -- will I now need to include a library() statement in each function? --j On Sun, Oct 20, 2013 at 3:58 PM, Gabor Grothendieck ggrothendi...@gmail.com wrote: On Sun, Oct 20, 2013 at 4:49 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-10-20 4:43 PM, Jonathan

Re: [Rd] Question about selective importing of package functions...

On 20 October 2013 at 16:20, Jonathan Greenberg wrote: | One more follow-up -- will I now need to include a library() statement in | each function? No. NAMESPACE entry, coupled with Imports: in DESCRIPTION. Dirk -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com

Re: [Rd] Question about selective importing of package functions...

To be clear, if I used Depends: somepackage before, and switched over to using Imports: somepackage, I'll need to mod my code that used to have a call to, say, somefunction to now have somepackage::somefunction, correct? --j On Sun, Oct 20, 2013 at 5:34 PM, Dirk Eddelbuettel e...@debian.org

Re: [Rd] Question about selective importing of package functions...

On 13-10-20 4:54 PM, Jonathan Greenberg wrote: Duncan: Thanks -- learning something new today -- quick follow-up, will using the import statements in the NAMESPACE, when a user goes to install.packages(), auto-install the dependent packages the same way Depends forces? You need to list the

Re: [Rd] Question about selective importing of package functions...

Jonathan, import/importFrom directives within the NAMESPACE places the symbol(s) within your package's namespace. They are treated exactly the same as (non-exported) symbols your code defines. ~G On Sun, Oct 20, 2013 at 3:41 PM, Jonathan Greenberg j...@illinois.eduwrote: To be clear, if I

Re: [Rd] Question about selective importing of package functions...

On 13-10-20 6:41 PM, Jonathan Greenberg wrote: To be clear, if I used Depends: somepackage before, and switched over to using Imports: somepackage, I'll need to mod my code that used to have a call to, say, somefunction to now have somepackage::somefunction, correct? No. You need to modify

Re: [Rd] Question about selective importing of package functions...

On 13-10-20 04:58 PM, Gabor Grothendieck wrote: On Sun, Oct 20, 2013 at 4:49 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-10-20 4:43 PM, Jonathan Greenberg wrote: I'm working on an update for my CRAN package spatial.tools and I noticed a new warning when running R CMD CHECK

[Rd] question about Makeconf and nvcc/CUDA

Dear R development: I'm not sure if this is the appropriate list, but it's a start. I would like to put together a package which contains a CUDA program on Windows 7. I believe that it has to do with the Makeconf file in the etc directory. But when I just use the nvcc with the shared

Re: [Rd] question about Makeconf and nvcc/CUDA

On 18/07/2013 07:45, Hodgess, Erin wrote: Dear R development: I'm not sure if this is the appropriate list, but it's a start. I would like to put together a package which contains a CUDA program on Windows 7. I believe that it has to do with the Makeconf file in the etc directory. That

Re: [Rd] question about Makeconf and nvcc/CUDA

[r-devel-boun...@r-project.org] on behalf of Prof Brian Ripley [rip...@stats.ox.ac.uk] Sent: Thursday, July 18, 2013 2:44 AM To: r-devel@r-project.org Subject: Re: [Rd] question about Makeconf and nvcc/CUDA On 18/07/2013 07:45, Hodgess, Erin wrote: Dear R development: I'm not sure

Re: [Rd] question about Makeconf and nvcc/CUDA

From: r-devel-boun...@r-project.org [r-devel-boun...@r-project.org] on behalf of Prof Brian Ripley [rip...@stats.ox.ac.uk] Sent: Thursday, July 18, 2013 2:44 AM To: r-devel@r-project.org Subject: Re: [Rd] question about Makeconf and nvcc/CUDA On 18/07/2013 07:45, Hodgess

Re: [Rd] question about Makeconf and nvcc/CUDA

Hi Erin Glad you are making progress on this with Brian's help. I thought I would mention a different approach that might save you some programming time and actually make the code more flexible at the same time. Basically, in a high-level language like R, it is nice to keep the code calling a

Re: [Rd] question about Makeconf and nvcc/CUDA

, July 18, 2013 9:16 AM To: r-devel@r-project.org Subject: Re: [Rd] question about Makeconf and nvcc/CUDA Hi Erin Glad you are making progress on this with Brian's help. I thought I would mention a different approach that might save you some programming time and actually make the code more

Re: [Rd] question about Makeconf and nvcc/CUDA

of Duncan Temple Lang [dtemplel...@ucdavis.edu] Sent: Thursday, July 18, 2013 9:16 AM To: r-devel@r-project.org Subject: Re: [Rd] question about Makeconf and nvcc/CUDA Hi Erin Glad you are making progress on this with Brian's help. I thought I would mention a different approach that might

Re: [Rd] question about Makeconf and nvcc/CUDA

...@ucdavis.edu] Sent: Thursday, July 18, 2013 1:09 PM To: Hodgess, Erin Cc: r-devel@r-project.org Subject: Re: [Rd] question about Makeconf and nvcc/CUDA Hi Erin It appears that there is only one file in src that is compile, i.e. cuda4.cu. That does not contain a routine named cuda4, which is what you

Re: [Rd] question about Makeconf and nvcc/CUDA

From: Duncan Temple Lang [dtemplel...@ucdavis.edu] Sent: Thursday, July 18, 2013 1:09 PM To: Hodgess, Erin Cc: r-devel@r-project.org Subject: Re: [Rd] question about Makeconf and nvcc/CUDA Hi Erin It appears that there is only one file in src that is compile

Re: [Rd] question about Makeconf and nvcc/CUDA

Wow! This is just amazing! Thanks so much. I didn't realize how intense this is. From: Duncan Temple Lang [dtemplel...@ucdavis.edu] Sent: Thursday, July 18, 2013 3:08 PM To: Hodgess, Erin Cc: r-devel@r-project.org Subject: Re: [Rd] question about

Re: [Rd] question about Makeconf and nvcc/CUDA

From: Duncan Temple Lang [dtemplel...@ucdavis.edu] Sent: Thursday, July 18, 2013 3:08 PM To: Hodgess, Erin Cc: r-devel@r-project.org Subject: Re: [Rd] question about Makeconf and nvcc/CUDA Hi Erin See the code below. Basically, I have created a new routine that you

Re: [Rd] Question about writing portable packages

Kevin Ushey: (12:10AM on Fri, Jun 07) I think the key word here is _other_ packages. It's entirely okay to call your package's own compiled code through the .Call interface (and the code you write may link to other packages; the obvious example being Rcpp code you write); however, it is not

[Rd] Question about writing portable packages

Dear R-devel list, I am creating an R package that includes C++ code. I tried to install it both in Linux and Windows and it worked. I load the C code via the NAMESPACE file using useDynLib. Now I am revising once again whether everything is ready before submitting the package to CRAN and I have

Re: [Rd] Question about writing portable packages

Guillermo, That phrase is referring to using .Call in your package to call a C function that shipped with a DIFFERENT package or is part of R itself (defined in the R source code). As long as you are only calling C functions you define in the C++ code that ships with your package you are fine.

Re: [Rd] Question about writing portable packages

Dear Kevin, Berwin and Gabriel, Thank you very much for your detailed and clear answers. According to your comments, in a few days I will submit my package to CRAN. I would also like to take this opportunity to thank all the R-devel list for being a wonderful place to discuss and clarify

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