-back your mistakes (AJR, 4Jan05).
A.J. Rossini
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-back your mistakes (AJR, 4Jan05).
A.J. Rossini
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examples are
equally usable, for various definitions of usability and contexts
that programmers would work in.
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED
On 4/21/05, Ali - [EMAIL PROTECTED] wrote:
Thanks a lot for the reply Henrik.
I do not know what was the motivation of R developers to go for yet another
OO design, but I wish the designers would have thought of ways to interface
this design to the other designs.
Depends on which OO design
-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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.
If only Bayesian methods weren't so deeply entrenched at Novartis...
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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R-devel
Sturtz and Uwe Ligges
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--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J
ยด box but not on ours
:-) ) For the interface the OpenBUGS sources need to be compiled with
Component Pascal. For R, we are using the .dll and .so provided by
OpenBUGS.
Sibylle
A.J. Rossini wrote:
Is this an MS Windows only package? The source package contains DLL's.
On Apr 8, 2005 1
.
(And maybe a condition object inheriting from packageLoadAndAttachError
in case of failure? :-))
Yes. whatever.
-k
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED
. whatever.
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
__
R-devel@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo
easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
__
R-devel@stat.math.ethz.ch mailing list
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early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
__
R-devel@stat.math.ethz.ch mailing list
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early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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I recall that we (the BioC group) ended up shying away from bundles,
since there were so few successful ones in existence; hence the work
put into the reposTools package (for making repositories). That might
be a better approach, Greg (i.e. make a 3rd party repository, rather
than a bundle, and
rdevel from yesterday, also in 1.9.1 (Debian, -3).
The man page of 'hist' (from the graphics package, obtained by
?hist) suggests 'truehist' under see also, but 'truehist' isn't
loaded by default (a sensible of course), so that ?truehist fails.
One can do help.search(), of course, which points
Prof Brian Ripley [EMAIL PROTECTED] writes:
On Thu, 9 Sep 2004, A.J. Rossini wrote:
rdevel from yesterday, also in 1.9.1 (Debian, -3).
The man page of 'hist' (from the graphics package, obtained by
?hist) suggests 'truehist' under see also, but 'truehist' isn't
loaded by default
ROrca has some of the tools you need. I'm getting it ready for
submission (note that it requires SJava to be installed).
See
http://www.analytics.washington.edu/~rossini/
and either get the zip package (if you have Windows) or the tar.gz
package (for Unixes).
Robert L Obenchain [EMAIL
Warnes, Gregory R [EMAIL PROTECTED] writes:
There appears to be no is.formula() function in R-1.9.1. May I suggest
that
is.formula - function(x) inherits(x, formula)
be added to base, since formula is a fundimental R type?
why not just
is(x,formula)
?
best,
-tony
--
(address line truncated)
Martin Maechler [EMAIL PROTECTED] writes:
PD == Peter Dalgaard [EMAIL PROTECTED]
on 20 Aug 2004 12:01:39 +0200 writes:
PD Duncan Murdoch [EMAIL PROTECTED] writes:
I could have sent this to the ESS or Xemacs devel list, but ESS Xemacs'
attempt to
Wolfgang Huber [EMAIL PROTECTED] writes:
On Thursday 12 August 2004 07:34, Prof Brian Ripley wrote:
In R-devel, the Depends: field in the DESCRIPTION file is now used by
library() to load the named packages before the current package, and
also to set up the environment to save images and
Uwe Ligges [EMAIL PROTECTED] writes:
I mean WinBUGS runs under Wine and is somehow controlled from rbugs in
R running in native mode under Linux. Hence the package is not
platform-specific.
Is this true? I've used WinBUGS under Wine (granted, not for a few
years, but it was adequate back
The svn server appears to be down.
best,
-tony
Douglas Bates [EMAIL PROTECTED] writes:
Marc Schwartz wrote:
I am not able to access cvs via rsync today. Is the service down?
Yes. We should have sent email about it to r-devel but it has been a
hectic several days.
The bad news is that
I stand corrected. One of the servers IS down, and the other one is
running.
best,
-tony
Uwe Ligges [EMAIL PROTECTED] writes:
A.J. Rossini wrote:
The svn server appears to be down.
Actually, I'm just checking out a developer release from
https://svn.r-project.org/R/trunk/
Note
Marc Schwartz [EMAIL PROTECTED] writes:
Uwe,
That did it. Using https: I am now able to do a checkout.
It seems to be slow at the moment, but the files are coming through.
Seems to run comparable to anoncvs. Also seems to hiccup and barf,
like anoncvs (infamouse server stalls).
Deepayan Sarkar [EMAIL PROTECTED] writes:
On Monday 19 July 2004 14:03, Martin Maechler wrote:
Note one difference subversion - CVS :
subversion being a 21th century child it rather
optimizes bandwidth over the expense of disk space:
It keeps files 'pristine' and your modification.
I.e.
That's a great idea, Greg! (actually, have you seen the
apt-listchanges and apt-listbugs features on debian, which does the
same prior to install? Then you can abort the install if the changes
aren't what you want (or if outstanding bugs have/havn't been
fixed/introduced, which is even better,
[EMAIL PROTECTED] writes:
does anyone know if there exists an effort to bring some kind of
distributed computing to R? The most simple functionality I'm after is
to be able to explicitly perform a task on a computing server. Sorry if
this is a non-informed newbie question...
As an
Paul Shannon [EMAIL PROTECTED] writes:
In a quick search of the R website just now, I found no mention of
a unit testing framework for R. I hope to find something
in the style of Java's JUnit, or Python's unittest. Is such a
thing available?
Paul -
I've got a first pass at such a thing,
the package 'tests' directory is great, and we use it, but it isn't
unit testing in the same sense -- more regression tests (reactive
rather than proactive).
best,
-tony
Tony Plate [EMAIL PROTECTED] writes:
Packages can have a 'tests' directory, which can contain foo.R and
foo.Rout.save
Tony Plate [EMAIL PROTECTED] writes:
How would a unit testing framework look different? (other than
maybe the ability to pick and choose tests easily and run them
quickly).
That is precisely it -- i.e. it's all testing, but it depends on
where and how the tests are intended.
(and then, how
Paul Gilbert [EMAIL PROTECTED] writes:
I am interested in this, but there is already a fair amount that can
be accomplished within the existing framework. I do something I think
of as unit testing, but my code chunks are packages rather than
functions. This does not have to be reactive. With
)
On Thu, 4 Mar 2004, A.J. Rossini wrote:
I'm trying to track down a rather critical problem. This happens both
on Debian's current unstable as well a from anoncvs built this
morning, reinstalling MASS. Is anyone else seeing this or am I just
broken and special?
609$ /home/Rdevel
I wrote:
I'm trying to track down a rather critical problem. This happens both
on Debian's current unstable as well a from anoncvs built this
morning, reinstalling MASS. Is anyone else seeing this or am I just
broken and special?
And it was just me.
Solution (thanks Deepayan, with hints
BXC (Bendix Carstensen) [EMAIL PROTECTED] writes:
The thing you want is an xtable function for an ftable object, so
you can get a nice readable LaTeX table with all the \multicolumn
and \cline bells and whistles. I'm sitting here for someone to
produce it...
Bendix -- Argh! I wanted this
Peter Dalgaard [EMAIL PROTECTED] writes:
Liaw, Andy [EMAIL PROTECTED] writes:
My understanding is far below `imperfect'! However, our box has all 8 slots
filled with 2GB PC2100s... Not a whole lot of room for change.
Right. Mine, however, has only 1G split as 4 x 256K over the 4+2 slots
Marsland, John [EMAIL PROTECTED] writes:
Yes, lots of packages do use C/Fortran code ... it would be great if there
were more packages that are pure R especially since the advent of S4
classes and namespaces.
Even with those, quite often we have to move code to C/C++/Fortran for
efficiency.
Simon Urbanek [EMAIL PROTECTED] writes:
Does anyone here use JEdit? I had a really quick look at it and it
looks like a copy of Emacs ... which is a pity, because one could do
much better with Java ;).
No one can do better than Emacs.
Re auto-completion: auto-completing keywords is ok, but
I do not see that as a problem; I've had reasonable luck running SJava
visualization code from Orca and ROrca remotely (over 1000bT), and VNC
works as well for that, but you are right, have to pay attention to
screen color depth.
Now whether SJava can be used for a stable system is a completely
Duncan Murdoch [EMAIL PROTECTED] writes:
On Tue, 20 Jan 2004 08:49:34 +0100, Martin Maechler
[EMAIL PROTECTED] wrote :
Of course R CMD check would have the harder job of also have
to work properly on non-Debian, non-Linux, even non-Unix systems..
For Windows, there's already the filename
[EMAIL PROTECTED] writes:
Full_Name: Joel Pitt
Version: 1.81
OS: XP
Submission from: (NULL) (218.101.45.243)
Running any of the windows binaries in Windows XP cause programs to immediately
exit without producing any error. The RGui is displayed momentarily and
everything looks fine
Bugzilla is a pain-in-the-arse to maintain, unless they've improved it
in the last 9 months. Just my two cents...
best,
-tony
Fernando Henrique Ferraz [EMAIL PROTECTED] writes:
Frank E Harrell Jr writes:
Let me add to the wish list the creation of some mechanism to better track
Fernando Henrique Ferraz [EMAIL PROTECTED] writes:
A.J. Rossini writes:
That's my point. Maintainance is critical, and any time spent on
systems administration (systems in the generic sense, here it's
bug-tracking) is less time spent on other more useful, or interesting,
or high-payoff
Thomas Lumley [EMAIL PROTECTED] writes:
The following is from Eric Raymond's new book on Unix programming.
You'll get more insight from using profilers if you think of them less
as ways to collect individual performance numbers, and more as ways to
learn how performance varies as a
I'm seeing weird issues in methods initialization, i.e. loading
marrayClasses loads Biobase, and when explicitly done, as in
library(Biobase)
library(marrayClasses)
is fine, but when Biobase is loaded via a require statement in
marrayClasses' .First.Lib, I end up with:
Warning
Kurt Hornik [EMAIL PROTECTED] writes:
Martin wrote re dropping unquoted function args from packages/data
Definitely not worth the pain (I *know* I'd hear ... comments from
them!)!
I might be one of them. You'll hear my screams for weeks...
Actually, I do think it is worth the pain.
Duncan Murdoch [EMAIL PROTECTED] writes:
On Sun, 21 Sep 2003 11:23:57 +0200 (MET DST), you wrote:
This is not a bug! It works when compiling from clean sources.
I guess you have unpacked new sources over old sources? Please clean the
directory before unpacking a new version, and try to compile
(no description available)
Tony: Is there a changelog entry somewhere in tetex which reveals anything?
Looking over the Debian changelogs reveals nothing -- just maintainer
stuff.
Fritz, where is Blue and Red defined in your distribution?
best,
-tony
--
A.J. Rossini
/DESCRIPTION' ... OK
* preparing 'Biobase':
* checking whether 'INDEX' is up-to-date ... OK
* creating vignettes ... OK
* removing junk files
* building 'Biobase_1.3.31.tar.gz'
YMMV.
best,
-tony
--
A.J. Rossini
[EMAIL PROTECTED]http
).
best,
-tony
--
A.J. Rossini
[EMAIL PROTECTED]http://www.analytics.washington.edu/
Biomedical and Health Informatics University of Washington
Biostatistics, SCHARP/HVTN Fred Hutchinson Cancer Research Center
UW : FAX=206-543-3461
Duncan Murdoch [EMAIL PROTECTED] writes:
It's not quite as convenient as anon cvs, but it's pretty close.
I hate to disagree, but nope, it's far more annoying. Requires one to
run a local repository to keep sync'ed between local and original,
unlike anon cvs.
best,
-tony
--
A.J. Rossini
package on
the Omegahat WWW site?
best,
-tony
--
A.J. Rossini / [EMAIL PROTECTED] / [EMAIL PROTECTED]
http://software.biostat.washington.edu/ UNTIL IT MOVES IN JULY.
Biomedical and Health Informatics, University of Washington
Biostatistics, HVTN/SCHARP, Fred Hutchinson Cancer Research Center
Prof Brian Ripley [EMAIL PROTECTED] writes:
It's the same as PR#2993, fixed yesterday in R-patched R-devel
I don't have a record of that bug report being sent to r-devel mailing
list. Is there a way to recieve bug reports other than firing up a
browser?
best,
-tony
--
A.J. Rossini
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