Re: [Rd] Bug in new() or validObject() in methods package (PR#7922)

2005-06-06 Thread Peter Dalgaard
are not identical: x - quote(expression()) class(x) [1] call x - expression() class(x) [1] expression Not that I can fathom what bearing that has on the real problem... -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N

Re: [Rd] Re: [R] A long digression on packages

2005-06-05 Thread Peter Dalgaard
, unfortunately... Comments? You might want to have a closer look at the way recommended packages are handled by an R distribution build, using rsync, links, timestamps, and makefile rules. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N

Re: [Rd] fix for save()'ing RAW on PPC (and other big endian platforms)

2005-06-04 Thread Peter Dalgaard
for tracking this down. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

[Rd] R-bugs will be offline starting June 7

2005-06-03 Thread Peter Dalgaard
Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 __ R-devel

Re: [Rd] Building R for windows tools link

2005-05-12 Thread Peter Dalgaard
kept needing to remind ourselves (and some others) about. It is open to the public, but it is not a service. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918

Re: [Rd] Bug in axis labels (PR#7860)

2005-05-12 Thread Peter Dalgaard
the Windows graphics driver, it does look like an R bug in the Windows graphics driver, but I'd like to hear from someone on a different platform... I don't see it with 2.1.0 on Linux (FC3). -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200

Re: [Rd] bug in modulus operator %% (PR#7852)

2005-05-11 Thread Peter Dalgaard
accuracy is likely to be affected by lack of precision (as in 1e18 %% 11, the unrealistic expectation of PR#7409), and tries harder to return a value in range when it is. So, not a bug. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept

Re: [Rd] bug in modulus operator %% (PR#7852)

2005-05-11 Thread Peter Dalgaard
Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 __ R-devel

Re: [Rd] Variable names with spaces in lm

2005-05-09 Thread Peter Dalgaard
a little unsure... -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] make hanging during compile of r-patched/R-devel on Fedora Core 3

2005-05-05 Thread Peter Dalgaard
, and buggy ones too, the point gets rather moot. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] documenation for arrows() is backwards (PR#7839)

2005-05-05 Thread Peter Dalgaard
be quite painful. I.e., we should fix the docs. BTW, the docs also might say that code=0 makes arrows behave like segments(). It is also a bit strange that the code argument isn't vectorized, which might have been useful. -- O__ Peter Dalgaard Blegdamsvej 3 c

Re: [Rd] documenation for arrows() is backwards (PR#7839)

2005-05-05 Thread Peter Dalgaard
[EMAIL PROTECTED] writes: Let me point out that I for one do not consider it good netiquette to use fake or mangled email addresses on bug reports! I get enough mail from the Mailer Daemon as it is. -- O__ Peter Dalgaard Blegdamsvej 3 c

Re: [Rd] documenation for arrows() is backwards (PR#7839)

2005-05-05 Thread Peter Dalgaard
Peter Kleiweg [EMAIL PROTECTED] writes: Peter Dalgaard wrote: [EMAIL PROTECTED] writes: Let me point out that I for one do not consider it good netiquette to use fake or mangled email addresses on bug reports! I get enough mail from the Mailer Daemon

Re: [Rd] Varying as.Date performance

2005-05-05 Thread Peter Dalgaard
char *last_LC_TIME=NULL; tmp = setlocale(LC_TIME, NULL) if (strcmp(tmp, last_LC_TIME)) return; last_LC_TIME = tmp; set the strings if the call to setlocale is considerably faster than 40 calls to strftime(), you might have a winner. -- O__ Peter Dalgaard

Re: [Rd] make hanging during compile of r-patched/R-devel on Fedora Core 3

2005-05-04 Thread Peter Dalgaard
? -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 __ R-devel

Re: [Rd] formals assignment now strips attributres

2005-05-01 Thread Peter Dalgaard
Patrick Burns [EMAIL PROTECTED] writes: Peter Dalgaard wrote: ... fjj - function() x formals(fjj) - list(x=quote(c(a=2, b=4))) fjj() a b 2 4 fix(fjj) fjj() a b 2 4 But the point of using 'formals' in the first place is to get a function that is self-contained. The real

Re: [Rd] segfault during build of 2.1.0 on RH9; print.POSIXct implicated (PR#7827)

2005-04-30 Thread Peter Dalgaard
others know better? -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] I'm unable to download R from any of the CRAN mirrors. Any sugge (PR#7823)

2005-04-29 Thread Peter Dalgaard
__ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark

Re: [Rd] Enhanced version of plot.lm()

2005-04-27 Thread Peter Dalgaard
to conveying the same information though... -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] Enhanced version of plot.lm()

2005-04-26 Thread Peter Dalgaard
Martin Maechler [EMAIL PROTECTED] writes: This would be non-compatible though for all those that have always used the current default 1:4. OTOH, MASS or Peter Dalgaard's book don't mention plot(lm fit ) or at least don't show it's result. Ummm, check page 183... -- O__ Peter

Re: [Rd] tclServiceMode: stop Tcl/Tk from updating

2005-04-26 Thread Peter Dalgaard
use things like tkwait.variable() when on=FALSE, then you're in trouble, but that goes for all platforms. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918

Re: [Rd] wild function example in optim

2005-04-26 Thread Peter Dalgaard
really need to do your own reading. References are given on the help page. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED

Re: [Rd] RAW types not restored from Rda files (PR#7812)

2005-04-25 Thread Peter Dalgaard
-- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] Infinite degrees of freedom for F-distribution

2005-04-22 Thread Peter Dalgaard
: NaNs produced in: pf(q, df1, df2, lower.tail, log.p) pf(1,df1=1,df2=) [1] 0.6826895 pf(1,df1=1,df2=) [1] 0.6826841 pf(1,df1=1,df2=) [1] 0 (notice that the middle case has actually begun to diverge from the limiting value) -- O__ Peter Dalgaard

Re: [Rd] Plots with lots of points (PR#7805)

2005-04-21 Thread Peter Dalgaard
likely to find a volunteer to fix it for you if you provide a reproducible example. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED

Re: [Rd] citation() chops Roeland (PR#7797)

2005-04-18 Thread Peter Dalgaard
Helland, et al., but it hardly counts as release-critical, nor trivial enough to slip in during code freeze, especially as regular expressions are involved (does one *ever* get them right on the first try?) -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics

Re: [Rd] RFC: hexadecimal constants and decimal points

2005-04-18 Thread Peter Dalgaard
commas anyway?). As it is we probably have to adjust to it, but we have to distinguish very carefully between reports, code, and data, and choose appropriate conventions for each case. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N

Re: [Rd] dealing with empty actual arguments matched by '...' formals

2005-04-16 Thread Peter Dalgaard
, but it may have been necessary for S compatibility. I think that what Tony was up to might be doable through variations on the match.call() scheme above. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University

Re: [Rd] strange error with rw2010dev

2005-04-11 Thread Peter Dalgaard
a simple unclass() will do here. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] make check-all fails (PR#7784)

2005-04-10 Thread Peter Dalgaard
of this on any other platforms. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] make check-all fails (PR#7784)

2005-04-10 Thread Peter Dalgaard
.. But you're right in principle; I had forgotten about that. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX

Re: [Rd] make check-all fails (PR#7784)

2005-04-09 Thread Peter Dalgaard
for identity up to machine precision does look a bit optimistic... -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX

Re: [Rd] R-beta 2004-04-07 build failed on AIX

2005-04-08 Thread Peter Dalgaard
and general attempts to bisect the path leading to the point of failure. Can you read the gc_count variable after the crash? It is sometimes useful to conditionalize breakpoints (cond 1 gc_count==1234 etc.) -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept

Re: [Rd] Error: cannot set length of non-vector

2005-04-04 Thread Peter Dalgaard
something like local(source(f, local=TRUE))? Or maybe put local=TRUE in the textConnection() call. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918

Re: [Rd] Problems with predict.lm: incorrect SE estimate (PR#7772)

2005-04-04 Thread Peter Dalgaard
$residual.scale [1] 0.08581163 print(se.delta.method - sqrt(s[1,1]+xp^2*s[2,2]+2*xp*s[1,2] + rms^2)) [1] 0.09304758 print(se.ss.formula - rms*sqrt(1+1/n+(xp-xm)^2/sum((x-xm)^2))) [1] 0.09304758 -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph

Re: [Rd] Alpha releases from Copenhagen not mirrored?

2005-04-03 Thread Peter Dalgaard
it happens, I run the build script by hand, but obviously not at 5am, so the CRAN mirroring might not pick it up. However, permissions are also different between cron-built tarballs and the manual ones. Looks like someone changed my umask to 0027 in a shell startup file... -- O__ Peter

Re: [Rd] Error: NAs are not allowed in subscripted assignments: change from R.1.9

2005-04-03 Thread Peter Dalgaard
to work). -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] Solaris10/amd64 + SunSutio Compile (PR#7767)

2005-04-02 Thread Peter Dalgaard
an integer to R_FINITE? and why isn't there a prototype causing automatic casting anyway? -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED

Alpha releases Re: [Rd] trouble building r-devel

2005-03-22 Thread Peter Dalgaard
packaging errors in time. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] Lemon drops

2005-03-15 Thread Peter Dalgaard
Marc Schwartz [EMAIL PROTECTED] writes: On Tue, 2005-03-15 at 18:05 +0100, Peter Dalgaard wrote: I bumped into the following situation: Browse[1] coef deg0NA deg4NA deg8NA deg0NP deg4NP deg8NP (Intercept)462510528492660762 Browse[1] coef[,1] [1

Re: [Rd] unexpected behaviour of expression(sum())

2005-03-13 Thread Peter Dalgaard
with the GS fonts on Fedora 3 (making xpdf misbehave on slides) but it seems to have been resolved long ago. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918

Re: [Rd] Incorrect calculation of loop in R.2.0.1 (PR#7724)

2005-03-12 Thread Peter Dalgaard
if is enclosed in parentheses It is not a bug in R that your program does not work correctly. Please do not abuse the bug report system like that. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University

[Rd] R 2.1.0 scheduled for April 18

2005-03-02 Thread Peter Dalgaard
Peter Dalgaard -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] Getting width of Tk text widget via tcltk

2005-02-28 Thread Peter Dalgaard
-borderwidth] - 4)/[font measure [.a cget -font] 0] 27 Converting to R is left as an exercise... If I got it right then the point is that at either side of the window you have by 1 pixel, n border pixels, and 1 spacer pixel before the first character. -- O__ Peter Dalgaard

Re: [Rd] Getting width of Tk text widget via tcltk

2005-02-28 Thread Peter Dalgaard
rather than 4). Hmm, that's odd. I needed the 4. Beware that Tcl does integer division (%/%). Did you round() or floor() the result? -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark

Re: [Rd] Getting width of Tk text widget via tcltk

2005-02-28 Thread Peter Dalgaard
)) [1] 80.3 Notice, btw, that textWindow$ID shouldnn't be necessary. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED

[Rd] Re: [R] H-F corr.: covariance matrix for interaction effect

2005-02-28 Thread Peter Dalgaard
Peter Dalgaard [EMAIL PROTECTED] writes: Where I would have expected (20*5*0.6917-2)/(5*(19-5*.6917)) [1] 0.8643953 Does anyone have a clue as to what is going on here? Is mighty SAS simply doing the wrong thing? The G-G epsilon depends only on the eigenvalues of the observed

Re: [Rd] bug report for as.function (PR#7702)

2005-02-24 Thread Peter Dalgaard
to the bug.report message as.function(pdfs[1]) Meanwhile I solved this problem otherwise. Hope this helps. Timo __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- O__ Peter Dalgaard Blegdamsvej

[Rd] Re: [R] H-F corr.: covariance matrix for interaction effect

2005-02-24 Thread Peter Dalgaard
Peter Dalgaard [EMAIL PROTECTED] writes: Bela Bauer [EMAIL PROTECTED] writes: Hi, I'm still not quite there with my H-F (G-G) correction code. I have it working for the main effects, but I just can't figure out how to do it for the effect interactions. The thing I really don't know

Re: [Rd] eapply weirdness/bug

2005-02-19 Thread Peter Dalgaard
- match.fun(FUN) nm - ls(envir=env,all.names=all.names) FUN2 - function(name,...)FUN(get(name),...) lapply(nm, FUN2, ...) } -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen

Re: [Rd] eapply weirdness/bug

2005-02-18 Thread Peter Dalgaard
inserted as an anonymous function... -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

[Rd] Suggestions for enhanced routines for mlm models.

2005-02-18 Thread Peter Dalgaard
specification, but there might be a point in having a more evocative interface, especially where transformed Y's are involved. This could be formula-based or matrix-based: contrasts=ginv(contr.sdif(4)) or formula based: ystruct=~index. -- O__ Peter Dalgaard

Re: [Rd] eapply weirdness/bug

2005-02-18 Thread Peter Dalgaard
of a bother though. (What happens to those currently?? The function doesn't seem to pass them to .Internal.) -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918

Re: [Rd] sprintf - was formatC with illegal input crashes Rgui (PR#7686)

2005-02-14 Thread Peter Dalgaard
(Only the last one is completely failsafe since the first two relies on 1:3 not being character: if (USE.NAMES length(dots) is.character(dots[[1]]) is.null(names(answer))) names(answer) - dots[[1]] ) -- O__ Peter Dalgaard Blegdamsvej 3 c

Re: [Rd] Bug in cor function (PR#7689)

2005-02-13 Thread Peter Dalgaard
of variables in an n x n correlation matrix in the pairwise case), but there's really not much point in reporting issues that are already known and documented. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University

Re: [Rd] getAnywhere and functions starting with . (PR#7684)

2005-02-12 Thread Peter Dalgaard
, with somewhat informative comments, e.g. - r33006 | pd | 2005-02-03 18:23:41 -0500 (Thu, 03 Feb 2005) | 1 line Changed paths: M /trunk/NEWS M /trunk/src/library/utils/R/objects.R getAnywhere got confused - -- O__ Peter Dalgaard Blegdamsvej 3

Re: [Rd] Pipe / Fork: Partial Solution / Providing Connections from C?

2005-02-11 Thread Peter Dalgaard
that is of course not to say that it cannot be done with clever multiplexing and buffering techniques -- or multithreading, except that R isn't threaded. BTW, we met in Heidelberg at the ECMBM ages ago, didn't we? -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept

Re: [Rd] Re: Packages and Libraries (was: Re: lme4 package etc ..)

2005-02-09 Thread Peter Dalgaard
... -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] Environment with no parent?

2005-02-08 Thread Peter Dalgaard
*only* use get and simple variable retrieval in a non-base environment with a NULL parent (eval(x - 1, envir=foo) would give 'couldn't find function -' or so). This could cause some confusion. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph

Re: [Rd] Environment with no parent?

2005-02-08 Thread Peter Dalgaard
for the use of any tuit that I can get (and they pay in $, notwithstanding the IRS wanting me to spend my copious free time on wrapping up enough red tape to prevent them from taxing income which they are clearly not entitled to do. Puff, pant...) -- O__ Peter Dalgaard Blegdamsvej

Re: [Rd] Environment with no parent?

2005-02-08 Thread Peter Dalgaard
up to read envir=.BaseEnv is probably quite doable. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45

Re: [Rd] sys.on.exit not working (PR#7665)

2005-02-07 Thread Peter Dalgaard
\n')) a - sys.on.exit() ; str(a) 12 } soe.test() language cat(In exit code\n) In exit code [1] 12 but if you replace - with a corresponding call to assign(), then you get. soe.test() NULL In exit code [1] 12 -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept

Re: [Rd] Incorrect behavior for ordering timepoints in reshape (PR#7669)

2005-02-07 Thread Peter Dalgaard
in varying - unique(nn[, 1]) times - sort(unique(nn[, 2])) is a thinko? Over to Thomas, I think. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918

Re: [Rd] getAnywhere

2005-02-03 Thread Peter Dalgaard
(gen=, cl=a, TRUE) without checking whether gen (or cl) is empty. Looks like an easy fix. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL

Re: [Rd] Re: [R] RData loading weirdness

2005-02-01 Thread Peter Dalgaard
the first one means exactly, though ... -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] print() from within a function - Windows specific? (PR#7584)

2005-01-28 Thread Peter Dalgaard
-FAQ.html#The-output-to-the-console-seems-to-be-delayed -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] typo in ?NotYetImplemented

2005-01-25 Thread Peter Dalgaard
/~esr/jargon/html/A/automagically.html -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] Very Long Expressions

2005-01-24 Thread Peter Dalgaard
a nesting no more than 9 levels deep. Persuading R to nest that way is a bit tricky though. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918

Re: [Rd] R 'postscript' plot - not a valid postscript (PR#7559)

2005-01-24 Thread Peter Dalgaard
this is still a bug. Yes. However, the workaround would be rather obvious... -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED

Re: [Rd] p.adjust(NAs), was Re: [BioC] limma and p-values

2005-01-18 Thread Peter Dalgaard
you need a way to say that there are really only k * (k - 1) / 2 tests. Then again, this probably only works for bonferroni, and R's pairwise.t.test() evades this by extracting the lower.tri before adjustment. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept

Re: [Rd] Problem with compiling - Freebsd on AMD64 (PR#7489)

2005-01-10 Thread Peter Dalgaard
error, so information about the GCC version used is crucial. Switching compilers or running with less than optimal optimization is your best chance, unless you can pinpoint exactly what is getting miscompiled so that a workaround can be found. -- O__ Peter Dalgaard Blegdamsvej

Re: [Rd] Any plans for commenting out region via something like /* */ ?

2005-01-07 Thread Peter Dalgaard
easily roll-back your mistakes (AJR, 4Jan05). ...and commit to a branch or use #ifdef so that the daily package checks don't break. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark

Re: [Rd] Broken Link for gregmisc_2.0.0.zip

2005-01-05 Thread Peter Dalgaard
email address for reporting web site problems please be added to the website in some conspicous place? Good idea. [Cc trimmed] -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark

Re: [Rd] Object Memory-limits in base and its help document

2005-01-04 Thread Peter Dalgaard
Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 __ R-devel

Re: [Rd] Re: [R] ISNAN() broken? in ver 2.x on MacOS X

2005-01-04 Thread Peter Dalgaard
Subject: Re: C++ header file problem - is this a bug? On Jan 4, 2005, at 2:13 AM, Bill Northcott wrote: Is this a bug or is it expected behaviour and if so why? Yes this is a bug but it is already filed see PR 14608. Thanks, Andrew Pinski -- O__ Peter Dalgaard

Re: [Rd] Plot elements echo NULL (PR#7466)

2005-01-03 Thread Peter Dalgaard
[EMAIL PROTECTED] writes: This has been reported by Peter Dalgaard in PR#7397. Please check whether a bug has already been reported before submitting a new report. Even the submitter had forgotten that he submitted it as a formal report then... Better have it in once too many than once too

Re: [Rd] row (FORTRAN) order?

2005-01-03 Thread Peter Dalgaard
is this a documentation bug? H. Maybe. FORTRAN order is known as column-*major* order. The row index varies most quickly, so the question is whether row order may have have some merit. Anyone have the terminology straight? -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept

Re: [Rd] Startup problem in 2.0.1 with install to /opt/R (PR#7437)

2004-12-21 Thread Peter Dalgaard
problem is if you have a competing install script/command in your path, although I suspect that normally bites earlier. It's normal to have failures from internet.R (if for instance you are not on-line at the time) which is why they are ignored. -p -- O__ Peter Dalgaard

Re: [Rd] R and Gnumeric?

2004-12-20 Thread Peter Dalgaard
is a Gnome/Gnumeric developer and works with R-core members (I believe mostly Martin Maechler) from time to time. If you look at Morten's reports, I'm sure you'll agree that he is rather good at actively seeking out erroneous and suboptimal code. -- O__ Peter Dalgaard Blegdamsvej 3

Re: [Rd] value of a loop broken by break

2004-12-19 Thread Peter Dalgaard
; if (i==3) { i; break }else 123; 456}) [1] 456 So you are getting the result of the last _completely_ evaluated statement (the enclosing {-statement is not completed either). -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N

Re: [Rd] Re: [R] Is k equivalent to k:k ?

2004-12-12 Thread Peter Dalgaard
that the arguments are 'along' and 'with'. Change the documentation, and people will start writing length.out, and will that port to S-Plus? (Serious question: I don't know.) It will. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N

Re: [Rd] pausing between plots - waiting for graphics input

2004-11-30 Thread Peter Dalgaard
solved and that does not look like happening soon. Not sure we really want that actually. What if someone issues a plot command from the command line? -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University

Re: [Rd] pausing between plots - waiting for graphics input

2004-11-30 Thread Peter Dalgaard
and they can't understand why their plot commands don't seem to have any effect...) -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL

Re: [Rd] problems with R-2.01 build with Mandrake 10.1

2004-11-29 Thread Peter Dalgaard
RedHat/Fedora) has a separate X development RPM, which you need to install. (Several other libs have the same convention, so do check the output from configure, and see if anything else went missing.) -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics

Re: [Rd] Differences between $ and [[

2004-11-29 Thread Peter Dalgaard
as a symbol. The fact that there is an object called p and that it contains a special name is immaterial (the opposite would be truly scary...). -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen

Re: [Rd] Is this a bug in the parser? (PR#7395)

2004-11-28 Thread Peter Dalgaard
object for a name. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] Version names

2004-11-28 Thread Peter Dalgaard
order (and R core has learned the hard way that sort order depends on locale), and it is an even worse idea to modify development concepts to fit a specificic alphabetical order. Case in point: A development version is _not_ the same as an alpha version! -- O__ Peter Dalgaard

Re: [Rd] str() resets class for environments

2004-11-26 Thread Peter Dalgaard
on the elements of the search path rather than on the environments themselves. This could also be useful if we were to ever make an effort to bring the semantics of detach() in line with its documentation... -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics

Re: [Rd] str() resets class for environments

2004-11-25 Thread Peter Dalgaard
causes these issues in the first place). External pointers have the same feature, and Luke Tierney has suggested that they perhaps should be wrapped in an object with more normal semantics. Perhaps we should consider doing likewise with environments? -- O__ Peter Dalgaard

Re: (PR#7393) Re: [Rd] dhyper() does not allow non-integer values for

2004-11-24 Thread Peter Dalgaard
distribution, and perhaps there's a way of making sense of it? I wouldn't think it corresponds to noncentral hypergeometric distributions. =09-thomas (who is suddenly coming across in quoted-unreadable?) -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics

Re: [Rd] TeXmacs and R 2.0.0

2004-11-21 Thread Peter Dalgaard
, redoing a calculation but not code that depends on it further along in the text, etc.). Is this still so? A more Sweave-like approach would be highly desirable. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University

Re: [Rd] TeXmacs and R 2.0.0

2004-11-21 Thread Peter Dalgaard
is present, and rerun it as R gets upgraded too. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] Declaration of RuleThickness() in src/main/plotmath.c (PR#7380)

2004-11-18 Thread Peter Dalgaard
about it (Perhaps this is actually legal ANSI C, and compilers are only supposed to barf if you declare statid double RuleThickness(void)?) -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen

Re: [Rd] Rcmd check for Windows fails (PR#7369)

2004-11-14 Thread Peter Dalgaard
will probably work -- it is still not recommended. You can also get away with backslashes here, but forward slashes are safer. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45

Re: [Rd] Loading libraries in 2.0.0 (PR#7364)

2004-11-12 Thread Peter Dalgaard
into place, and the install step is done prior to packaging. So you should take the error message as a hint to get a newer zip file (available from the same place). This is not a bug. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N

Re: [Rd] foreign(read.spss) in rw2000 and re2001beta

2004-11-06 Thread Peter Dalgaard
, what do you mean all NA? If the only factor level corresponds to a value that isn't present, wouldn't you expect to get a factor with one level and all values missing? What does str() say about the resulting object? -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept

Re: [Rd] foreign(read.spss) in rw2000 and re2001beta

2004-11-06 Thread Peter Dalgaard
that are not present in data, right? -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] 2.0.1 buglets

2004-11-04 Thread Peter Dalgaard
the result of configure. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] 2.0.1 buglets

2004-11-04 Thread Peter Dalgaard
Peter Dalgaard [EMAIL PROTECTED] writes: but everything seems to configure and make ok. Should this message be expect or is this a bug? It is unexpected. Is it new in 2.0.1 beta? You have told us your kernel, not your distro. This looks like a bug, but not in R. I've seen

Re: [Rd] barplot manpage (PR#7331)

2004-11-03 Thread Peter Dalgaard
also section Obvious. In a bunch of other places too, I guess. -- O__ Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX

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