Re: [Rd] Feature request: txtProgressBar with ability to write to arbitrary stream

2011-03-16 Thread Andreas Borg
Thanks for all the suggestions. However, I was not really looking for a solution but I want to propose this (in my view useful) change to be included in a future version of R. For the time being I will include a modified version in my package. Best regards, Andreas -- Andreas Borg

Re: [Rd] Fixing the HDF5 package: the on.exit mystery

2011-03-16 Thread H C Pumphrey
H C Pumphrey wrote: I'm trying to fix a subtle bug in the hdf5 package. This package provides an interfaces to the HDF5 library and hence allows one to load data into R from files in the HDF5 format. The bug appeared during a period in which R changed but the package did not. [details

Re: [Rd] R-Forge down

2011-03-16 Thread Stefan Theussl
On 03/16/2011 05:43 PM, Max Kuhn wrote: Web page and svn, but you probably already know this. Thanks a lot for the note. This is due to a network system failure at WU. From the intranet we cannot connect to services outside and vice versa. I hope the guys at IT services will fix this soon.

[Rd] tools::checkRd() output different from R CMD check

2011-03-16 Thread Dan Tenenbaum
Hello, When running tools::checkRd() on a single .Rd file, should I expect the output to be the same as that generated by R CMD check when it checks .Rd files? R CMD check finds the following warning: * checking Rd \usage sections ... WARNING Assignments in \usage in documentation object

Re: [Rd] Standardized Pearson residuals (and score tests)

2011-03-16 Thread Gordon K Smyth
Hi Peter and others, If it helps, I wrote a small function glm.scoretest() for the statmod package on CRAN to compute score tests from glm fits. The score test for adding a covariate, or any set of covariates, can be extracted very neatly from the standard glm output, although you probably

Re: [Rd] Standardized Pearson residuals

2011-03-16 Thread John Maindonald
One can easily test for the binary case and not give the statistic in that case. A general point is that if one gave no output that was not open to abuse, there'd be nothing given at all! One would not be giving any output at all from poisson or binomial models, given that data that really calls

[Rd] Feature request: display file name in R CMD check warning

2011-03-16 Thread Dan Tenenbaum
Hi, I came across the following warning in R CMD check (it only occurred on Windows): The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. The package I'm looking at is one