Re: [R] depmixs4 standardError() issue

, this package seems to be working well for me so far. Thanks again for taking the time to respond to my question! Best, Heather -- Heather D. Lucas, PhD (she/her pronouns) Assistant Professor, Cognitive and Brain Sciences Committee on Diversity

[R] depmixs4 standardError() issue

Hello, I've been enjoying using the "Mixture and Hidden Markov Models in R" by Visser & Speekenbrink to learn how to apply these analyses to my own data using depmixS4. I currently have a fitted 4-state mixture model with three emissions variables and one binomial covariate (HS). I am trying

Re: [R] nlme gls issue

You shouldn't use use r-squared in the context of glm, in fact it's not possible. But if you need try calculating pseudo r-squared values From: R-help on behalf of Rolf Turner Sent: Saturday, September 17, 2022 12:29:56 AM To: Kayla Bazzana Cc:

Re: [R] Circular Graph Recommendation Request

Here another one https://rpubs.com/StevenDuttRoss/voronoiTreemap -Original Message- From: Stephen H. Dawson, DSL Sent: Saturday, May 28, 2022 3:37 PM To: Lucas Heber Mariano Dos Santos ; Bert Gunter Cc: r-help Subject: Re: [R] Circular Graph Recommendation Request Thank you, Lucas

Re: [R] Circular Graph Recommendation Request

That`s voronoi tremap Here a tutorial to get you started https://www.stat.auckland.ac.nz/~paul/Reports/VoronoiTreemap/voronoiTreeMap.html -Original Message- From: R-help On Behalf Of Stephen H. Dawson, DSL via R-help Sent: Saturday, May 28, 2022 1:10 PM To: Bert Gunter Cc: r-help

Re: [R-es] ¿Cómo puedo determinar cuellos de botella con información genética de poblaciones remanentes en R?

Se me olvidó este https://academic.oup.com/mbe/article/31/7/1929/2925788 ᐧ 2018-06-07 23:48 GMT+02:00 Lucas Fernandez Seivane : > Hola a todos > No es mi campo, pero estos dos paquetes pueden ser de utilidad > https://grunwaldlab.github.io/Population_Genetics_in_R/Introduction.htm

Re: [R-es] ¿Cómo puedo determinar cuellos de botella con información genética de poblaciones remanentes en R?

Hola a todos No es mi campo, pero estos dos paquetes pueden ser de utilidad https://grunwaldlab.github.io/Population_Genetics_in_R/Introduction.html https://cran.r-project.org/web/packages/PopGenKit/PopGenKit.pdf Saludos ᐧ 2018-06-07 23:30 GMT+02:00 eric : > Hola Diego, no se la respuesta a tu

Re: [R] Is it good practice to have a package depend on Rtools(for unziping of .7z and.rar files)? Crab legal?

e keep coming along > and sticking things into it." > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > > On Thu, Mar 29, 2018 at 6:56 AM, Lucas Ferreira Mation > <lucasmat...@gmail.com> wrote: > > I created this package, > > > >

[R] Is it good practice to have a package depend on Rtools(for unziping of .7z and.rar files)? Crab legal?

l strategy that did not support .7z and .rar "unzipping", requesting the user to manually unpack those files. regards Lucas [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see

Re: [R-es] Microsoft R Open

nan...@hotmail.com >: > Me la recomiendas por encima de la version de CRAN? > ------ > *De:* Lucas Fernandez Seivane <queve...@gmail.com> > *Enviado:* domingo, 18 de febrero de 2018 23:52 > *Para:* Jesús Para Fernández > *Cc:* r-help-es@r-pro

Re: [R-es] Microsoft R Open

Hola Jesús Es la antigua Revolution R. Está muy acelerada, usa MKL por defecto Yo la uso desde hace mucho tiempo. Un saludo. ᐧ 2018-02-18 23:50 GMT+01:00 Jesús Para Fernández < j.para.fernan...@hotmail.com>: > Buenas, > > Alguno ha probado a usar Microsfot R Open? Segun leo, se han centrado

[R] mood.test/mood.medtest

below for a reproducible example. library(RVAideMemoire) set.seed(123) a <- runif(100) b <- runif(120,0.2,1.1) indicator <- c(rep(0,100),rep(1,120)) x <- c(a,b) mood.test(x ~ indicator) mood.medtest(x ~ indicator) Has anybody encounter this problem before or would be able to provide any insights? B

Re: [R] How to pre-process fwf or csv files to remove unexpected characters in R?

zed and C++ based 2016-11-06 14:16 GMT-02:00 David Winsemius <dwinsem...@comcast.net>: > >> On Nov 6, 2016, at 5:36 AM, Lucas Ferreira Mation <lucasmat...@gmail.com> >> wrote: >> >> I have some large .txt files about ~100GB containing a dataset in fixe

[R] How to pre-process fwf or csv files to remove unexpected characters in R?

ted-characters-when-importing-to-r> ). regards Lucas Mation IPEA - Brasil [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the p

[R-es] Big Data Asturias

Saludos a Todos Hemos creado un grupo informal de gente interesada en Big Data en Asturias que pretendemos reunirnos de manera más o menos regular. Para todos los que andéis por aquí, tendréis más info en https://www.facebook.com/BigDataAsturias/

Re: [R-es] CURSOS R

En castellano, uno de los factótums de la lista, Emilio Torres Manzanera, y el resto de la unidad de Estadística de la Universidad de Oviedo dan unos cursos estupendos, a los que tuve la suerte de asistir. Aquí tenéis material: http://uce.uniovi.es/indexr.html ᐧ 2015-11-27 14:29 GMT+01:00 Pedro

Re: [R-es] CURSOS R

Hay varios en coursera/edx,algunos ya empezados otros para empezar. Si no los encuentras, por favor pide más info ᐧ 2015-11-27 8:40 GMT+01:00 Marcos Bermejo : > Hola a tod@s: > > > ¿Sabéis si en estos momentos hay o va a haber algún curso online de R > gratuito?. O en

[R] Comparing two GAMs using anova (mgcv)

Hey all, I've fitted two GAMs to some data using mgcv. The only difference between the two models is that one includes an additional smooth term (the smooth terms are s(x), s(y) and s(log(y)), the difference being that one model contains s(y) as additional term whereas the other one only

[R] Plotting GAM fit using RGL

Hello all, I’ve fitted a bivariate smoothing model (with GAM) to some data, using two explanatory variables, x and y. Now I’d like to add the surface corresponding to my fit to a 3D scatterplot generated using plot3d(). My approach so far is to create a grid of x and y values and the

[R] Polynomial Regression and NA coefficients in R

Hey all, I'm performing polynomial regression. I'm simulating x values using runif() and y values using a deterministic function of x and rnorm(). When I perform polynomial regression like this: fit_poly - lm(y ~ poly(x,11,raw = TRUE)) I get some NA coefficients. I think this is due to the

[R] GAM Penalised Splines - Intercept

Hey all, I'm using the gam() function inside the mgcv package to fit a penalised spline to some data. However, I don't quite understand what exactly the intercept it includes by default is / how to interpret it. Ideally I'd like to understand what the intercept is in terms of the B-Spline

[R] Median across matrices

Hey all, I have a list of matrices. I'd like to calculate the median across all those matrices for each element. What I'd like to end up with is a matrix containing the median of all [1,1] [1,2] etc. elements across all matrices. Is there a concise way of doing that? Thanks!

[R] Copula package - normalCopula() param order

Hey all, I'm trying to construct a 7-dimensional normal copula using the copula package. I'd like to supply as parameter a randomly generated correlation matrix (that I'll convert to a vector so I can feed it to the normalCopula function). What order do the pairwise correlations inside that

[R] Jackknife in Logistic Regression

information can be added if needed. Best regards. Lucas. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting

[R] Logistic Regression with Offset value

Dear R friends. I´m trying to fit a Logistic Regression using glm( family='binomial'). Here is the model: *model-glm(f_ocur~altitud+UTM_X+UTM_Y+j_sin+j_cos+temp_res+pp, offset=(log(1/off)), data=mydata, family='binomial')* mydata has 76820 observations. The response variable f_ocur) is a 0-1.

[R] Logistic Regression with Offset value

function takes into consideration the *offset *used to create the model? if not, what should I do in order to get the correct probabilities in the new data? I´d really appreciate if anyone could help me. Thank you. Lucas. [[alternative HTML version deleted

[R] predict glm() with offset

really appreciate it. Thank you. Lucas. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

[R] ffsave problems

something in R? or the tools are suposed to work alone after installing? If any can help me with this, I´d really appreciate it. Lucas. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

[R] ffbase, help with %in%

I'm missing something If any of you knows how to solve this, please teach me. Thank you so much. Lucas. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

[R] Deldir() Thiessen Polygons Problem

Good evening to all. I find myself trying to create some Thiessen Polygons, in order to finish a meteorology research. This is the script I found to create the Polygons: * * *voronoipolygons - function(x) {* * require(deldir)* * if (.hasSlot(x, 'coords')) {* *crds - x@coords * *} else

Re: [R] Piecewise Lasso Regression

Dear Vito, Thank you very much for the advice - I will try it and see how the regression looks. Best, Lucas On Jun 6, 2012, at 11:45 AM, Vito Muggeo (UniPa) wrote: dear Lucas, If you are interested in selecting the number of breakpoints here a possible remedy: 1. Fit a segmented

Re: [R] Piecewise Lasso Regression

Hi Vito, I am more interested in selecting the number of breakpoints. My data has some structure and I believe that fitting a piecewise regression would be of great benefit. Thanks, Lucas On Jun 6, 2012, at 4:54 AM, Vito Muggeo (UniPa) wrote: dear lucas, yes you are right, segmented does

[R] Piecewise Lasso Regression

Hi All, I am trying to fit a piecewise lasso regression, but package Segmented does not work with Lars objects. Does any know of any package or implementation of piecewise lasso regression? Thanks, Lucas __ R-help@r-project.org mailing list https

[R] Matrix BYTES size

less bytes? I´ll appreciate if you can help me. Thank you. Lucas [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org

[R] readHTLMTable help

), the table is downloaded in a unfriendly format and I can not differentiate the column If anyone could help me I´ll appreciate it. Thank you. Lucas. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

[R] Problems with generalized linear model (glm) coefficients.

more options? What does it mean that I keep getting those signs? If anyone could help me I would really appreciate it. Thank you. Lucas. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [R] Re : Problems with generalized linear model (glm) coefficients.

. 2012/3/7 Pascal Oettli kri...@ymail.com Hi Lucas, Do you apply your analysis in time or in space? Regards, Pascal - Mail original - De : Lucas lpchaparro...@gmail.com À : r-help@r-project.org Cc : Envoyé le : Mercredi 7 mars 2012 22h34 Objet : [R] Problems with generalized

Re: [R] Re : Problems with generalized linear model (glm) coefficients.

the time to answer my questions. Lucas. 2012/3/7 peter dalgaard pda...@gmail.com On Mar 7, 2012, at 15:02 , Lucas wrote: Hi Pascal. I applied my analysis in time. I have 25 fire seasons, each season starts on November and ends up on April (our summer) Hey, why are you worrying about

[R] evaluate String

Hello to everyone. In MATLAB you can find a function that executes a text string. I have not find it in R. Does anyone knows a similiar function in R, i think a valuable tool. Thank you. Lucas. [[alternative HTML version deleted]] __ R-help@r

Re: [R] evaluate String

PERFECT Thank you so much. Lucas. 2012/3/6 R. Michael Weylandt michael.weyla...@gmail.com eval(parse(text = STRING)) but you often don't need to do this. A somewhat canonical quote in the R-world: If the answer is parse() you should usually rethink the question. -- Thomas Lumley, R-help

[R] Nagelkerke R2

. If anyone can help me I´d really appreciate it. Greetings Lucas. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting

[R] 6 different errors while using glm.nb

Hello to everyone. I need your help. I´m trying to fit the same *glm.nb* to a different data set and i am getting these errors in some of the data. Sometimes, one data set has two of these errors when fitting the model. 1.- Error en while ((it - it + 1) limit abs(del) eps) { : valor ausente

[R] Trust in a glm.nb model results with an itereation limit reached

you for taking the time to help me. Greetings Lucas. -- View this message in context: http://r.789695.n4.nabble.com/Trust-in-a-glm-nb-model-results-with-an-itereation-limit-reached-tp4376073p4376073.html Sent from the R help mailing list archive at Nabble.com

[R] [R-pkgs] New package geotools

(zipCode(Paris),7) Regards, Antoine Lucas. ___ R-packages mailing list r-packa...@r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [R] Using optim with parameters that are factors (instead of continuous parameters)

the regression five times for each individual is a little unwieldy. So it made the most sense to use solution #2. Thanks again for your prompt and productive response! Lucas __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE

[R] Using optim with parameters that are factors (instead of continuous parameters)

I've been programming maximum likelihood estimation models using the function optim. My current research requires modeling a particular parameter as a categorical variable (what R calls a factor), not as a continuous parameter. (The research question is, at what level of X does a subject in our

[R] Split data frame by date (POSIXlt)

Hello everyone, I want to split a data.frame by the column date . The data frame looks like this date time openclose 02.01.201109:00:00 1000 1200 02.01.201109:05:02 1200 1203 ... 01.02.2011

[R] Escape sequence in eval ()

Hello, I am wondering how to get the quotation marks into a variable expression. I can't escape it with the backslash \ ... Example: I can access my data frame via TABLE$2011-01-02$columnD Now I want to do this automatically.. (with a for loop).. a - TABLE b -

[R] stepwise with F statistics

the community that it's possible to do a stepwise using F statistics as criteria, but they don't specify how to do it, so, I would appreciate if anyone can help me with some indication about any package that could do what I need. Thanks in advance. Lucas

[R] Interpolation

know how to solve this. If anyone know any possible reason or any suggestion to do an interpolation, I would be really grateful. Lucas _ [[alternative HTML version deleted

[R] Read header csv file

a beginner with R, and probably there are some better forms to express in R what I need but I am working alone so there is nobody in person to help me so I apologize for my simple questions. Thanks in advance. Lucas

[R] Check value interval in a if loop

pvalue0.1) does anyone know a way to stablish a inteval as an statement for my if loop. Thanks in advance Lucas _ [[alternative HTML version deleted

[R] P-value and R-squared variable selection criteria

it by myself but it will take me a while but I would like to know if there is some package to help to do it faster. Well, thanks in advance. Lucas _ Nuevo Windows Live, un mundo lleno de

[R] Variable as a filename

,...That's my question, How can I write the order read.csv2 in a way to obtain the file correspondant to the year read in the for loop. Thanks in advance. Lucas _ [[alternative HTML

[R] Save data in txt

an specific predictor. Cheers, Lucas _ [[elided Hotmail spam]] [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

[R] Import/export ENVI files

Hi! I'm a beginner with this webpage so, I don't know if I'm sending my question to the correct site. Anyway, I'm working with R and I need to import and export ENVI files, (*.HDR files). A colleague told me that there is a package to import/export envi files but I haven't found that package,

[R] Problems computing 2-way-mixed-model ANOVA

and age as additional covariates in the model, but I am not sure how to do this either. Any help would be very much appreciated! Thank you, Sincerely, Lucas Eggert [[alternative HTML version deleted]] __ R-help@r-project.org mailing list