[R] Mantel test

2015-05-04 Thread Nick Jeffery
ts in R but the genetic distances output by MEGA are already in 'matrix' format so I don't know how to load this CSV file into R without it calculating new genetic distances when I convert it to the dist form required by the test. Thanks in advance, Nick -- Nick Jeffery, PhD Cand

[R] Removing 99% similar sequence help

2015-02-04 Thread Nick Jeffery
oesn't allow me to set the 99% parameter. This is because I'm building a phylogeny with tons of nearly identical sequences so I want to reduce the number of individuals. Thanks for any help and suggestions, Nick -- Nick Jeffery, PhD Candidate Integrative Biology SCIE 1453 University of Gu