Re: [R] Network issue

Maybe I missed the rest of the post? You are more likely to get help with your problems if you create a minimal reproducible example. Kindest regards, Stephen Sefick On Tue, Feb 20, 2024, 12:24 James Powell wrote: > [[alternative HTML version dele

Re: [R] Help with connection issue for R (just joined, leading R for our agency)

Hello, I use ESS everyday for work. If you choose to explore this route, spacemacs configuration files/layers may ease your transition to emacs. Stephen Sefick, PhD On Fri, Dec 11, 2020, 06:25 Jeremie Juste wrote: > > Hello Alejandra, > > || On Tuesday, 8 Dec 2020 at 10:48, Alej

Re: [R] Language environment

Maybe in .Rprofile? Maybe in .first in .Rprofile? Stephen Sefick, PhD On Tue, Nov 17, 2020, 08:01 Steven Yen wrote: > In R, I was able to set the language environment by fixing the line > > in file "C:\Program Files\R\R-4.0.3\etc\Rconsole", line 70 below, set > langua

Re: [R] Simultaneous Equation Model with Dichotomous Dependent Variables

Casey, I have used laavan for sem in the past. Stephen Sefick, PhD On Mon, Oct 5, 2020, 02:12 Casey Mallon wrote: > Hello everyone! > > I am currently working with a time series panel data set measuring six > dependent variables: > 4 of which are binary and 2 of which are count

Re: [R] Reproducibility Between Local and Remote Computer with R

versions (R and add-on packages) are the same. Fwiw, Stephen On Sun, Aug 9, 2020, 08:26 Kevin Egan wrote: > Hi Stephen, > > I believe I am using Renv, but on my remote computer I am running batch > files. > > Thanks, > > Kevin > > On 8 Aug 2020, at 18:18, stephen sef

Re: [R] Reproducibility Between Local and Remote Computer with R

Caveat, I have only skimmed this email thread, so please forgive me if I have missed something. Are you able to use Renv, packrat, docker, or anaconda? Your compute environments are very different. Kindest regards, Stephen Sefick On Sat, Aug 8, 2020, 19:05 Abby Spurdle wrote: > Hi Ke

Re: [R] National Weather Service Data

I am unfamiliar with Rnomads. Could you provide a minimal reproducable example? You are more likely to receive help this way. On Thu, Jul 2, 2020, 18:06 Philip wrote: > Is anyone out there familiar with rNOMADS? It is a package to get into > National Weather Service forecasting data with R? >

Re: [R] Posting: R-Project Code/Package for a Stepwise Multiple Regression Analysis

Please search archives and Google. There are many resources. I think that the MASS package has stepwise regression, but please confirm yourself. On Mon, Mar 30, 2020, 09:45 Jastine bugayong wrote: > Statistics newbie over here getting her feet wet into the research realm. > > I will be using

Re: [R] R unable to locate base unix commands (tar, sh etc)

I work on a Mac now. I believe .profile gets sourced first and then .bashrc. I set PATH in my .bashrc. I set a git token in .Renviron and a blank .Rprofile because I use packrat quite often. I have no problem with my environment at a shell or in Rstudio. I would start by commenting where you set

Re: [R] Include pre-existing PDF files as vignettes in an R package?

Yes, 'C-c C-e l l' I think, but follow the pop-up, and everything should be ok. On Feb 19, 2018 07:05, "Rainer Krug" wrote: > > > > On 19 Feb 2018, at 12:25, Duncan Murdoch > wrote: > > > > On 19/02/2018 5:47

Re: [R] pulling recessions out of a hydrograph

I have done this. I would use zoo for the time series part, and I think I wrote a function using the min max after a period to locate the peak, go to the peak, and calculate the slope 4 hours afterward. If I can locate the code I don't mind sharing, but it is buried on my PhD machine. On Feb 5,

[R] S4 Question; show generic method

Hello, I changed the name of a function, and updated my R packages with update.packages(ask=FALSE), and I have had a curious (to me) change in show method. I am developing a package, and a generic show method I defined for my S4 class is not autocalled when I type the object name - object_name;

Re: [R] colorspace namespace problem with R CMD check --as-cran

-dependencies-td918313.html#a918314 ). Thanks for the help. kindest regards, Stephen Sefick On Tue, Apr 11, 2017 at 6:26 PM, stephen sefick <ssef...@gmail.com> wrote: > Here is the relevant snippett from devtools::check() logs. I searched > every file in pkg/R, and there is no call t

Re: [R] colorspace namespace problem with R CMD check --as-cran

e:colorspace? Such a function would > have the environment getNamespace("colorspace"). > Bill Dunlap > TIBCO Software > wdunlap tibco.com > > > On Tue, Apr 11, 2017 at 2:47 PM, stephen sefick <ssef...@gmail.com> wrote: > > I am at a loss. I do not know how to make this

Re: [R] colorspace namespace problem with R CMD check --as-cran

f the functions in package:colorspace? Such a function would > have the environment getNamespace("colorspace"). > Bill Dunlap > TIBCO Software > wdunlap tibco.com > > > On Tue, Apr 11, 2017 at 2:47 PM, stephen sefick <ssef...@gmail.com> wrote: > > I am at a

[R] colorspace namespace problem with R CMD check --as-cran

object ‘plot.index’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Thank you for any help in advance. kindest regards, Stephen Sefick -- Let's not spend our time and resources thinking about things that are so little or so large

Re: [R] system call removes special characters from text output

t "[A/B]\n"; > > At a shell prompt: > > [72]% ./tmp.pl > [A/B] > > Inside R: > > > system(' ./tmp.pl') > [A/B] > > > -- > Don MacQueen > > Lawrence Livermore National Laboratory > 7000 East Ave., L-627 > Livermore, CA 94550 > 925-

Re: [R] system call removes special characters from text output

n example > with a system call to "echo". > Then state what you expect to happen and what happens instead. > > B. > > > > > On Apr 4, 2017, at 12:44 AM, stephen sefick <ssef...@gmail.com> wrote: > > > > Hi Jeff, > > > > My apol

Re: [R] system call removes special characters from text output

rom my phone. Please excuse my brevity. > > On April 3, 2017 8:57:07 PM PDT, stephen sefick <ssef...@gmail.com> wrote: > >Hello, > > > >I am writing an R package, and I am using system() to call a perl > >script. > >The output of the perl script is correct excep

[R] system call removes special characters from text output

Hello, I am writing an R package, and I am using system() to call a perl script. The output of the perl script is correct except for "[A/B]" is output as "AB". Can someone explain this behavior. I would like to try and fix this. many thanks, Stephen Sefick -- Let'

Re: [R] Make sure a data frame has been "fun through" a function

; desire. > > Bill Dunlap > TIBCO Software > wdunlap tibco.com > > > On Tue, Feb 21, 2017 at 8:30 AM, Charles C. Berry <ccbe...@ucsd.edu> > wrote: > > On Tue, 21 Feb 2017, stephen sefick wrote: > > > >> Sorry for not being clear. I have never used

Re: [R] Make sure a data frame has been "fun through" a function

uot;, "Alt") coded_genotype <- alleles[alleles!=impossible_genotype] return(coded_genotype) } ##stop if not pre-processed with functionA functionB(test_data) ##processed with functionA functionB(test_data_genotypes) On Tue, Feb 21, 2017 at 6:41 AM, David Winsemius <dwin

Re: [R] Make sure a data frame has been "fun through" a function

PM, Charles C. Berry <ccbe...@ucsd.edu> wrote: > On Mon, 20 Feb 2017, stephen sefick wrote: > > Hello, >> >> I would like to add something to a data frame that is 1) invisible to the >> user, 2) has no side effects, and 3) I can test for in a following >> functi

Re: [R] Make sure a data frame has been "fun through" a function

If 1) means "can't be > discovered by the user" then no (at least not easily). Anything you can see > they can see. > > Best, > Ista > > > On Feb 20, 2017 4:21 PM, "stephen sefick" <ssef...@gmail.com> wrote: > > Hello, > > I would l

Re: [R] Make sure a data frame has been "fun through" a function

uot;won't annoy the user" then > yes, e.g., add something to the class attribute. If 1) means "can't be > discovered by the user" then no (at least not easily). Anything you can see > they can see. > > Best, > Ista > > > On Feb 20, 2017 4:21 PM, "stephen sefick&q

[R] Make sure a data frame has been "fun through" a function

Hello, I would like to add something to a data frame that is 1) invisible to the user, 2) has no side effects, and 3) I can test for in a following function. Is this possible? I am exploring classes and attributes and I have thought about using a list (but 1 and 2 not satisfied). Any help would

[ESS] R markdown/sweave emacs 24.3.1

thanks, Stephen Sefick [[alternative HTML version deleted]] __ ESS-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/ess-help

[ESS] file completion R script buffer not auto completing

Hello: Long time R user; new ESS user. Thank you all so much for this wonderful IDE. I am having problems with the ESS and the R script buffer. I would like to be able to use an autocomplete file name/path like in R studio. I am sure that I am missing something in my .emacs file. Please let me

Re: [R] Melt and compute Max, Mean, Min

Milu, I am unsure what you are trying to do. Please provide a minimal reproducible example, and someone will likely be able to help you with the R code. What have you tried so far? kindest regards, Stephen On 11/18/2016 06:49 AM, Miluji Sb wrote: Dear all, I have 51 years of data (1960 -

[R] digital online identifier (doi) CRAN manual?

Hello all, I apologize if this is the incorrect forum for this query. I am a package maintainer, and would like to have a doi for the package manual. What might be a good way to go about this? kindest regards, Stephen Sefick -- Let's not spend our time and resources thinking about things

Re: [R] changing x and y ranges in a PCA plot created by library(labdsv)

Can you provide code and data (with dput)? You will likely get an answer more quickly. On Sun, Aug 7, 2016 at 4:34 AM, Mohsen Sharafatmandrad < mohsen.sharafatmand...@gmail.com> wrote: > Hi, > > I want to change x and y ranges in a PCA plot created by library(labdsv). > When I run "plot(o.pca,

[R] Rcpp on R 3.2.4 compile problem Linux

ces utils datasets methods base loaded via a namespace (and not attached): [1] tools_3.2.4 kindest regards, -- Stephen Sefick, PhD ** Auburn University Biological Sciences **

Re: [R] FD package

Marine, brackish, freshwater 3.381153 Invertebrate Feeder >Browser > trait6 > com1 0.5 - 1.0 > com2 1.0 - 2.0 > com3 1.0 - 2.0 > com4 1.0 - 2.0 > com5 1.0 - 2.0 > com6 1.0 - 2.0 > com7 1.0 - 2.0 > com8 1.0 - 2.0 > com9 0.5 - 1.0 > com1

Re: [R] FD package

r insists on that the respective contract is concluded only > > upon an express mutual agreement on all its aspects. > > - the sender of this e-mail informs that he/she is not authorized to > enter > > into any contracts on behalf of the company

Re: [R] Alternatives for explicit for() loops

> >>> { > >>> ppp<- sum(LED[j,])+(m-1) > >>> hlm[i]<- > >>> (choose(ppp,i))*((-1)^(i))*((i+1)^((-1)*((1/beta)+1))) > >>> } > >>&g

Re: [R] monte carlo simulations in permanova in vegan package

version deleted]] > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provi

Re: [R] monte carlo simulations in permanova in vegan package

s to > > generate the p value with a reasonable number of permutations. Hopefully > > this clarifies my situation and aim? > > > > > > > > I was therefore hoping there was a way of coding for the Monte-Carlo > > permutation procedure into adonis? &

Re: [R] Installing pre-compiled R in Linux

8153501 > Office: A 4.23 > Email: pd@cbs.dk Priv: pda...@gmail.com > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-he

Re: [R] Quantile Regression without intercept

ject.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849

Re: [R] reshape: melt and cast

You are welcome. On Tue, Sep 1, 2015 at 10:44 AM, Matthew Pickard < matthew.david.pick...@gmail.com> wrote: > Yep, that works. Thanks, Stephen. I should have drawn the parallel with > Excel Pivot tables sooner. > > On Tue, Sep 1, 2015 at 9:36 AM, stephen sefick <ssef...@gma

Re: [R] reshape: melt and cast

ot;, "1558", "1559"), class = "factor"), RaterName = > structure(c(2L, > 2L, 2L, 2L, 2L, 2L), .Label = c("cwormhoudt", "zspeidel"), class = > "factor"), > SI1 = c(1L, 1L, 1L, 1L, 1L, 1L), SI2 = c(3L, 2L, 2L, 3L, > 3

Re: [R] reshape: melt and cast

This is very hard to read. Please use dput to provide data. I believe the answer is in the manual. Look at the aggregation function argument. Please excuse my brevity; this message was sent from my telephone. On Sep 1, 2015 12:11 AM, "Matt Pickard" wrote: > Hi,

Re: [R] Choosing columns by number

, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

Re: [R] Fwd: ayuda- help me

You will generally get more and better responses if you have a reproducible example. Please read the posting guide. Please excuse my brevity; this message was sent from my telephone. On Aug 25, 2015 4:14 PM, Paulo Fonseca paulocfonse...@gmail.com wrote: Cordial saludo, Muy amablemente

Re: [R] How to validate the cluster analysis?

You could look at silhouette width in, I think, the cluster package. Please excuse my brevity; this message was sent from my telephone. On Jun 10, 2015 1:37 AM, My List mylistt...@gmail.com wrote: All, I am new to the world of statistics. I am interested in finding out the validation

Re: [R] problems editing R console

/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama

Re: [R] pls - No variable selection

, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

Re: [R] PCA analysis and bootstraped loadings

guide http://www.R-project.org/ posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849

Re: [R] Multiple Plots using ggplot

Initiative, Kenya. Mobile:(+254)718492836 Email: fr...@aims.ac.za https://sites.google.com/a/aims.ac.za/fredo/ On Tue, Mar 31, 2015 at 4:20 PM, stephen sefick ssef...@gmail.com wrote: Your data and post is still not provided in one of the formats provided here: http://stackoverflow.com/questions

Re: [R] Multiple Plots using ggplot

University, African Maths Initiative, Kenya. Mobile:(+254)718492836 Email: fr...@aims.ac.za https://sites.google.com/a/aims.ac.za/fredo/ On Mon, Mar 30, 2015 at 5:34 PM, stephen sefick ssef...@gmail.com wrote: Hi Frederic, Can you provide a minimal reproducible example including either real

Re: [R] Multiple Plots using ggplot

http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849

Re: [R] Installing R on Linux Red Hat Server

]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick

Re: [R] rJava Scientific Linux 6.5 - Can not install

JAVA_HOME=/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.75.x86_64/ 5) Ensured all of the fields in the output of 4 were populated 6) in a sudo R session, I ran install.packages(rJava, library=personal_library) Stephen On Mon, Feb 2, 2015 at 2:39 PM, stephen sefick ssef...@gmail.com wrote: Included

Re: [R] rJava Scientific Linux 6.5 - Can not install

/BatteriesO.O#. #.O#. with /Software/Embedded Controllers) .OO#. .OO#. rocks...1k --- Sent from my phone. Please excuse my brevity. On February 2, 2015 10:39:14 AM PST, stephen sefick

[R] rJava Scientific Linux 6.5 - Can not install

): [1] colorspace_1.2-4 digest_0.6.8 grid_3.1.0 gtable_0.1.2 [5] MASS_7.3-37 munsell_0.4.2plyr_1.8.1 proto_0.3-10 [9] Rcpp_0.11.4 reshape2_1.4.1 scales_0.2.4 stringr_0.6.2 [13] tools_3.1.0 -- Stephen Sefick

[R] RcppArmadillo compilation errors (Scientific Linux 6.5)

LC_MESSAGES=en_US.utf8 [7] LC_PAPER=en_US.utf8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base -- Stephen Sefick

Re: [R] RcppArmadillo compilation errors (Scientific Linux 6.5)

solved; sorry for the spam. library(devtools) install_github(RcppCore/RcppArmadillo) On Wed, Dec 3, 2014 at 4:51 PM, stephen sefick ssef...@gmail.com wrote: I would appreciate any help that you may be able to give. Please let me know if any more information is required. I get

[R] R Foundation publish citable Manual for packages

sure that everyone that makes the R ecosystem so useful gets attribution for their work. Many thanks to everyone involved. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849

Re: [R] GGPLOT Question

, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

[R] SL 6.5 R from source; should I update texlive? if yes, how to point configure to new binary.

./configure to look to this directory for the tex binary? or 2. Is there something easier that I am overlooking? I appreciate all of the help. --Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849

[R] ggplot2; svg; text point size specification

. #for instance #ggsave(~/Desktop/test2.svg, p ,height=3, width=3) #ggsave(~/Desktop/test2.svg, p ,height=10, width=10) #both look very different to me. What am I missing? Thank you for all of the help in advance. Stephen -- Stephen Sefick ** Auburn

Re: [R] Off-topic? Linux laptop for R

, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

Re: [R] PCA and gglot2

, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

Re: [R] PCA and gglot2

, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

Re: [R] merge_recurse in libray reshape - how does it work?

thanks, Stephen On 05/30/2013 10:02 PM, Dennis Murphy wrote: For the general purpose of Recall, this might help: http://rfunction.com/archives/364 It's typically used in recursive function definitions - e.g., the Fibonacci series. Dennis On Thu, May 30, 2013 at 7:57 PM, Stephen Sefick sas0

Re: [R] merge_recurse in libray reshape - how does it work?

a very simple example and then work through what the code does in it step by step. I'll leave it to others to attempt a mini-tutorial beyond this. -- Bert On Thu, May 30, 2013 at 7:57 PM, Stephen Sefick sas0...@auburn.edu wrote: merge_recurse function (dfs, ...) { if (length(dfs

[R] tree in tree package - Error: cannot allocate vector of size 2.0 Gb

: cannot allocate vector of size 2.0 Gb shouldn't I be able to allocate more memory than 2GB? I am sure that I am missing something. Any help would be greatly appreciated. kind regards, -- Stephen Sefick ** Auburn University Biological Sciences 331

[R] merge_recurse in libray reshape - how does it work?

works. Could somebody explain this to me? many thanks, -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu

[R] Chron format question h:m not working

missing? many thanks, -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

Re: [R] Chron format question h:m not working

=c(times=h:m:s)) #[1] 15:00:00 #or you could use library(lubridate) hm(15:00) #[1] 15H 0M 0S A.K. - Original Message - From: Stephen Sefick sas0...@auburn.edu To: r-help@r-project.org r-help@r-project.org Cc: Sent: Wednesday, May 1, 2013 12:28 PM Subject: [R] Chron format

Re: [R] Chron format question h:m not working

Sorry everybody. Permutation not selection is the key thing here. My fault. What date time formats are suggested? kindest regards, Stephen On 05/01/2013 01:21 PM, Enrico Schumann wrote: On Wed, 01 May 2013, stephen sefick sas0...@auburn.edu writes: Thanks for the quick replies. I have

Re: [R] R web application development

I can't offer any advice, but I feel like you could probably get a good start on this by looking through the archives. On Mon 18 Mar 2013 06:55:33 PM CDT, John linux-user wrote: Dear all, I am wondering if what would be the simple way to develop a simple web application that runs R. That

Re: [R] Ggplot2: Moving legend, change fill and removal of space between plots when using grid.arrange() possible use of facet_grid?

Look at the function melt and use the factor columns as id variables. You should be able to do what you want with facet_grid. I have found inkscape useful to build legends and modify axes labels. I know this is only a partial answer, but I hope this helps. Stephen On Wed 06 Mar 2013

Re: [R] Code to fetch summary info from vector

the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849

Re: [R] subsetting time series

, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

[R] source file on startup question - why does an old version of a function show up? ggplot or R?

dichromat_1.2-4digest_0.5.2 grid_2.15.2 [5] gtable_0.1.1 labeling_0.1 MASS_7.3-22memoise_0.1 [9] munsell_0.3plyr_1.7.1 proto_0.3-9.2 RColorBrewer_1.0-5 [13] reshape2_1.2.1 scales_0.2.2 stringr_0.6.1 -- Stephen Sefick

Re: [R] source file on startup question - why does an old version of a function show up? ggplot or R?

Nothing like posting to the list to figure it out yourself. defined the little sourcing function in .Rprofile as the .First file. Now all is well. Sorry for clutering everyones email boxes. kind regards, Stephen Sefick On Fri 16 Nov 2012 08:52:00 AM CST, Stephen Sefick wrote: All, 1. I

[R] Convert Package Interest?

I am thinking about submitting a package to CRAN that contains some units conversion functions that I use on a regular basis. Would this be helpful to the community, or would it be better to keep this as a personal package? I don't want to clutter CRAN. many thanks, -- Stephen Sefick

[R] ggplot2 qplot pch not working anymore

column that I would like to use to specify the shapes to pch in qplot. Any help would be greatly appreciated. #example code a - 1:10 b - 1:10 pch - 1:10 q - data.frame(a,b,pch) qplot(a,b, pch=pch) Many thanks, -- Stephen Sefick ** Auburn

Re: [R] ggplot2 qplot pch not working anymore

I'm sorry I didn't give the correct code, or explaination; the shape=pch doesn't work anymore. For example this used to work, but no longer can accept continuous values: #example code a - 1:10 b - 1:10 pch - 1:10 q - data.frame(a,b,pch) qplot(a,b, shape=pch) many thanks, Stephen Sefick

Re: [R] ggplot2 qplot pch not working anymore

: Stephen Sefick sas0025 at auburn.edu writes: I'm sorry I didn't give the correct code, or explaination; the shape=pch doesn't work anymore. For example this used to work, but no longer can accept continuous values: #example code a - 1:10 b - 1:10 pch - 1:10 q - data.frame(a,b,pch) qplot(a,b

Re: [R] Fitting data and removing outliers

-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University

Re: [R] Fitting data and removing outliers

regression modelling. FWIW, Stephen On 07/13/2012 02:26 PM, Lauren Vogric wrote: Yes, they are unusual events that occurred that affected my data. They have no positive affect in shaping a strong model. -Original Message- From: stephen sefick [mailto:ssef...@gmail.com] Sent: Friday

Re: [R] please help!

://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849

Re: [R] Help in increasing R memory in unix

-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn

[R] fill a dataframe with zeros where the rows are a smaller subset of a larger dataframe (species by site)

to make z as if I had y, but I only have the rownames of y y - data.frame(sp1=c(0,0,0), sp2=c(0,0,0), sp3=c(0,0,0), sp4=c(0,0,0)) rownames(y) - c(d, e, f) z - rbind(x,y) z - z[order(row.names(z)),] #I know I am missing something #many thanks, -- Stephen Sefick

Re: [R] fill a dataframe with zeros where the rows are a smaller subset of a larger dataframe (species by site)

. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick

Re: [R] fill a dataframe with zeros where the rows are a smaller subset of a larger dataframe (species by site)

. Stephen -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

Re: [R] lm()

-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

Re: [R] Principal Component Analysis

the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849

Re: [R] Cleaning up messy Excel data

]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick

[R] 4th corner analysis ade4 - what do the colors mean

I have used the fourthcorner function as suggest by dray and legendre (model 2 and 4 then combine). I plot the combined value with plot(four.comb, type=G). What do the colors mean? I have both grey and black bars. many thanks, Stephen -- Stephen Sefick

Re: [R] add data to a file while doing a loop

Without context, read reproducible code, it is hard to answer this question. What system are you on? Do you need to write one line of data or a data frame or a list out? Are trying to write a graphic out? It will be easier to answer your question with some context. Good luck! Stephen On

Re: [R] help me....

and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall

Re: [R] PCA on high dimentional data

, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ** sas0...@auburn.edu http://www.auburn.edu/~sas0025

Re: [R] Regression Models

PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stephen Sefick ** Auburn University Biological Sciences

[R] Partitioning Around Mediods then rpart to follow - is this sensible

followed this by a classification tree analysis with rpart to discern which variables drive the clustering on the original data. Is this a sensible approach? many thanks, Stephen Sefick __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

[R] Cp -Inf

Hello All: I am using the leaps package on scale and centered data for an exhaustive search. There are Cp values of -Inf being returned for all models. I was going to look at the source before contacting the list, but it has been a while since I have looked under the hood. There are .rdb

[R] grep fixed (?) in 2.14

, scripts2source)] #here is my problem; I would like these to be removed. scripts2source[c(2,5,13,14,20,24)] #Thanks for all of your help in advance #kindest regards, #Stephen Sefick __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] grep fixed (?) in 2.14

That did the trick. I have read about regular expressions often, and sometimes I get them right and sometimes I don't. Is there a good reference resource that anyone could suggest? Thanks for all of the help. Stephen Sefick On 11/03/2011 08:03 AM, jim holtman wrote: your syntax is wrong

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