Henrik and Jeff -
Thank you both for your thoughts and helpful suggestions on this problem -
a colleague and I did some forensics on this end and discovered the issue
was related to a combination of 1) slow network connections and 2) having
my personal library installed on a different server from
Immediately after you get that error:
Error in if (any(diff)) { : missing value where TRUE/FALSE needed
what does
> traceback()
output? (I suspect this error occurs in tools:::checkMD5sums() used
to assert that the package files are correctly downloaded). Also,
going forward, let's try with
I don't know specifically where that error comes from... but I can think of two
possible directions to go:
1) If you have ever run R as Administrator then you may need to delete your
personal library (‘~/My Documents/R/win-library/3.5’) and reload all packages
NOT using Run As Administrator.
Hi Jeff -
I do not think the issue is Bioconductor (which is why I had posted the
inquiry on this forum - but as an aside, I do have the latest version of
Bioconductor (3.8)). As an example, when I attempt to use the generic
install.packages() function, I receive the same error message. I have
Please ask questions about Bioconductor on the Bioconductor forum [1].
Chances are that you need to re-install Bioconductor because packages are
installed in two-digit version-specific libraries... e.g. R 3.4 and R 3.5 do
not share packages.
[1] https://support.bioconductor.org
On January 15,
Hi -
I am working with R on a Window Server 2012 R2 - I had originally installed
R (v3.5.1) in September/October 2018 and have used multiple packages
without incident. However, last week, when attempting to install additional
packages (using install.packages() or Bioconductor's
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