Re: [R] R Shiny Help - Trouble passing user input columns to emmeans after ANOVA analysis

2024-06-06 Thread Ivan Krylov via R-help
В Wed, 5 Jun 2024 19:07:19 -0500 I B пишет: > However, I am getting the following error: *"Argument is of length > zero."* > if (selected_graph() == cols$column2 | selected_model() == "Main > effects model") { The error must be coming from here. At least one of selected_graph(),

Re: [R] R Shiny Help - Trouble passing user input columns to emmeans after ANOVA analysis

2024-06-06 Thread Bert Gunter
Wrong list. Shiny is software from an external provider, POSIT (formerly RStudio) and not part of R, itself. They have a community support site at: https://forum.posit.co/?_gl=1*bh848i*_ga*MTY2NjcwNzQ4LjE3MTYyMzkzODQ.*_ga_2C0WZ1JHG0*MTcxNzY4NTExNi4yLjAuMTcxNzY4NTExNi4wLjAuMA .. Cheers, Bert On

[R] R Shiny Help - Trouble passing user input columns to emmeans after ANOVA analysis

2024-06-06 Thread I B
Hello everybody, I have experience coding with R, but am brand new to R Shiny. I am trying to produce an application that will allow users to upload their own dataset, select columns they want an ANOVA analysis run on, and generate graphs that will allow users to view their results. However, I am

[R] [R-pkgs] QGA 1.0 is released

2024-06-03 Thread Giulio Barcaroli
Dear R users, I am pleased to announce that QGA 1.0 is now available on CRAN. QGA implements the Quantum Genetic Algorithm, as proposed by Han and Kim in 2000, and is an R implementation derived from the Python one by Lahoz-Beltra in 2016. Under this approach, each solution is represented as

Re: [R] R code for overlapping variables -- count

2024-06-03 Thread Ebert,Timothy Aaron
dalgaard Sent: Monday, June 3, 2024 5:02 AM To: Shadee Ashtari Cc: r-help@r-project.org Subject: Re: [R] R code for overlapping variables -- count [External Email] If they are binary (0/1 dummies), can't you just "&" them as in table(Female & USA & MidIncome) (or sum() i

Re: [R] R code for overlapping variables -- count

2024-06-03 Thread peter dalgaard
If they are binary (0/1 dummies), can't you just "&" them as in table(Female & USA & MidIncome) (or sum() if you don't care about the number of 0s) -pd > On 2 Jun 2024, at 00:31 , Shadee Ashtari wrote: > > Hi! > > I am trying to find the code for how to get counts for intersectional >

Re: [R] R code for overlapping variables -- count

2024-06-02 Thread Rui Barradas
"AA", "BB", "US"), n, T),   Income  = as.factor(sample(1:3, n, T)) ) # Dummy variable ONE = rep(1, nrow(x)) r = aggregate(ONE ~ Sex + Income + Country, length, data = x) r = r[, c("Country", "Income", "Sex")] print(r) It is

Re: [R] R code for overlapping variables -- count

2024-06-02 Thread Leo Mada via R-help
Correcting a small glitch - see new code. From: Leo Mada Sent: Sunday, June 2, 2024 8:34 PM To: Shadee Ashtari Cc: r-help@r-project.org Subject: [R] R code for overlapping variables -- count Dear Shadee, If you have a data.frame with the following columns: n

Re: [R] R code for overlapping variables -- count

2024-06-02 Thread Rui Barradas
n, T),   Income = as.factor(sample(1:3, n, T)) ) # Dummy variable ONE = rep(1, nrow(x)) r = aggregate(ONE ~ Sex + Income + Country, length, data = x) r = r[, c("Country", "Income", "Sex")] print(r) It is possible to write more simple code, if you need

[R] R code for overlapping variables -- count

2024-06-02 Thread Leo Mada via R-help
, T)) ) # Dummy variable ONE = rep(1, nrow(x)) r = aggregate(ONE ~ Sex + Income + Country, length, data = x) r = r[, c("Country", "Income", "Sex")] print(r) It is possible to write more simple code, if you need only the particular combination of variables (which you spec

Re: [R] R code for overlapping variables -- count

2024-06-02 Thread Duncan Murdoch
On 2024-06-01 6:31 p.m., Shadee Ashtari wrote: Hi! I am trying to find the code for how to get counts for intersectional variables. For example, I have three unique categorical variables -- "Female," "USA," and "MidIncome" -- and I'm trying to see how many people I have at the intersection of

[R] R code for overlapping variables -- count

2024-06-02 Thread Shadee Ashtari
Hi! I am trying to find the code for how to get counts for intersectional variables. For example, I have three unique categorical variables -- "Female," "USA," and "MidIncome" -- and I'm trying to see how many people I have at the intersection of the three. Thank you so much, Shadee

Re: [R] R, RStudio, and a server for my iPad.

2024-05-21 Thread peter dalgaard
iekever...@gmail.com > Cc: r-help@r-project.org > Subject: Re: [R] R, RStudio, and a server for my iPad. > > Grand, > Thank you. I have been able to use my iPad to connect to a server running > RStudio server as described in an earlier email and can use the virtual > keyb

Re: [R] R-help Digest, Vol 255, Issue 17

2024-05-21 Thread Michael L Friendly
You might be interested in the `Rdatasets` package, https://vincentarelbundock.github.io/Rdatasets/ which lists over 2200 datasets from various packages. What is the context of the `lottery` dataset. I seem to recall smth to do with the NJ Lottery -Michael 1. Availability of Sdatasets

[R] [R-pkgs] segmented 2.1-0 is released

2024-05-16 Thread Vito Muggeo via R-packages
dear R users, I am pleased to announce that segmented 2.1-0 is now available on CRAN. segmented focuses on estimation of breakpoints/changepoints of segmented, i.e. piecewise linear, relationships in (generalized) linear models. Starting with version 2.0-0, it is also possible to model

Re: [R] R CMD check vs RStudio check

2024-05-10 Thread Ivan Krylov via R-help
В Fri, 10 May 2024 03:46:54 + "Boylan, Ross" пишет: > The devtools::check() documentation mentions it invoke > pkgbuild::build() and rcmdcheck::rcmdcheck(). Since I'm guessing my > command line build and check invoked those last 2, or at least > operated similarly, they seem less likely

Re: [R] R CMD check vs RStudio check

2024-05-09 Thread Boylan, Ross via R-help
ideas? Deleting the directory just seems weird and so it's hard to know where to look. Thanks. Ross -Original Message- From: Ivan Krylov Sent: Friday, May 3, 2024 12:52 PM To: Boylan, Ross via R-help Cc: Boylan, Ross Subject: Re: [R] R CMD check vs RStudio check В Fri, 3 May 2024 19

Re: [R] [R-sig-ME] lmer error: number of observations <= number of random effects

2024-05-07 Thread Bert Gunter
I think you should seek out a local statistician with whom to consult if at all possible, as the details of your research goals and the nature of the data you have to meet those goals matter and cannot be effectively discussed in a remote forum like this. That is, to be blunt, you seem to be risk

Re: [R] [R-sig-ME] lmer error: number of observations <= number of random effects

2024-05-07 Thread Srinidhi Jayakumar via R-help
Thank you very much for your responses! What if I reduce the model to modelLSI3 <- lmer(SA ~ Index1* LSI+ (1+LSI |ID),data = LSIDATA, control = lmerControl(optimizer ="bobyqa"), REML=TRUE). This would allow me to see the random effects of LSI and I can drop the random effect of age (Index1)

Re: [R] [R-sig-ME] lmer error: number of observations <= number of random effects

2024-05-06 Thread TT FF
See if this paper may help If it helps reducing the model when you have few observations. the (1|ID) may increase the type 1 error. https://journals.sagepub.com/doi/10.1177/25152459231214454 Best > On 6 May 2024, at 07:45, Thierry

Re: [R] [R-sig-ME] lmer error: number of observations <= number of random effects

2024-05-06 Thread Thierry Onkelinx via R-help
Dear Srinidhi, You are trying to fit 1 random intercept and 2 random slopes per individual, while you have at most 3 observations per individual. You simply don't have enough data to fit the random slopes. Reduce the random part to (1|ID). Best regards, Thierry ir. Thierry Onkelinx Statisticus

Re: [R] R CMD check vs RStudio check

2024-05-03 Thread Ivan Krylov via R-help
В Fri, 3 May 2024 19:45:08 + "Boylan, Ross via R-help" пишет: > & $R CMD check . > * checking for file './DESCRIPTION' ... ERROR > Required fields missing or empty: > 'Author' 'Maintainer' You're checking a source package directory. This could work, but it's much easier and more reliable

[R] R CMD check vs RStudio check

2024-05-03 Thread Boylan, Ross via R-help
ents/BP/pimex/..Rcheck/00check.log' for details. PS C:\Users\rdboylan\Documents\BP\pimex> $R C:\Program Files\R\R-4.3.3\bin\R.exe --- The DESCRIPTION file includes Authors@R: utils::person("Ross", "Boylan",

[R] [R-pkgs] New package - fastTS

2024-04-11 Thread Peterson, Ryan
Hi R enthusiasts, I am happy to announce a new package available on CRAN: fastTS (https://cran.r-project.org/web/packages/fastTS/). fastTS is especially useful for large time series with exogenous features and/or complex seasonality (i.e. with multiple modes), allowing for possibly

[R] [R-pkgs] clusterMI: Cluster Analysis with Missing Values by Multiple Imputation

2024-03-15 Thread Vincent Audigier via R-packages
Dear all, I am pleased to announce the release of a new package named 'clusterMI' on CRAN. clusterMI allows clustering of incomplete observations by addressing missing values using multiple imputation. For achieving this goal, the methodology consists in three steps: 1. missing data

[R] R 4.3.3 is released

2024-02-29 Thread Peter Dalgaard via R-announce
The build system rolled up R-4.3.3.tar.gz and .xz (codename "Angel Food Cake") this morning. This is a minor update, intended as the wrap-up release for the 4.3.x series. This also marks the 6th anniversary of R-1.0.0. (2000-02-29) The list below details the changes in this release. You can

Re: [R] R interpreting numeric field as a boolean field

2024-01-30 Thread Paul Bernal
Hi Bert, After doing sapply(your_dataframe, "class"), it seems like R is recognizing that the field is of type numeric after all, the problem (it seems) is how the import_list() function from the rio package is reading the data (my suspicion). Best regards, Paul El mar, 30 ene 2024 a las 14:59,

Re: [R] R interpreting numeric field as a boolean field

2024-01-30 Thread Paul Bernal
Hi Bert, Below the information you asked me for: nrow(mydataset) [1] 2986276 sapply(mydataset, "class") $`Transit Date` [1] "POSIXct" "POSIXt" $`Market Segment` [1] "character" $`Número de Tránsitos` [1] "numeric" $`Tar No` [1] "character" $`Beam Range (Operations)` [1]

Re: [R] R interpreting numeric field as a boolean field

2024-01-30 Thread CALUM POLWART
And your other option - recode what gets imported. It may well be you will actually want the blanks to be NAs for instance rather than blank. I'm assuming the True and False are >$0 and $0 from your description. (Or maybe vice versa). So I'd have made my column name something like

Re: [R] R interpreting numeric field as a boolean field

2024-01-30 Thread Duncan Murdoch
If you are using the read_excel() function from the readxl package, then there's an argument named col_types that lets you specify the types to use. You could specify col_types = "numeric" to read all columns as numeric columns. If some columns are different types, you should specify a

Re: [R] R interpreting numeric field as a boolean field

2024-01-30 Thread Bert Gunter
Incidentally, "didn't work" is not very useful information. Please tell us exactly what error message or apparently aberrant result you received. Also, what do you get from: sapply(your_dataframe, "class") nrow(your_dataframe) (as I suspect what you think it is, isn't). Cheers, Bert On Tue,

Re: [R] R interpreting numeric field as a boolean field

2024-01-30 Thread Paul Bernal
Dear friend Duncan, Thank you so much for your kind reply. Yes, that is exactly what is happening, there are a lot of NA values at the start, so R assumes that the field is of type boolean. The challenge that I am facing is that I want to read into R an Excel file that has many sheets (46 in this

Re: [R] R interpreting numeric field as a boolean field

2024-01-30 Thread Duncan Murdoch
On 30/01/2024 11:10 a.m., Paul Bernal wrote: Dear friends, Hope you are doing well. I am currently using R version 4.3.2, and I have a .xlsx file that has 46 sheets on it. I basically combined all 46 sheets and read them as a single dataframe in R using package rio. I read a solution using

[R] R interpreting numeric field as a boolean field

2024-01-30 Thread Paul Bernal
Dear friends, Hope you are doing well. I am currently using R version 4.3.2, and I have a .xlsx file that has 46 sheets on it. I basically combined all 46 sheets and read them as a single dataframe in R using package rio. I read a solution using package readlx, as suggested in a StackOverflow

[R] [R-pkgs] hydroGOF back on CRAN (v0.5-4 released)

2024-01-22 Thread Mauricio Zambrano-Bigiarini
Dear all, After being archived on CRAN on 2023-10-16 , hydroGOF is finally back on CRAN since January 21th: https://cran.r-project.org/package=hydroGOF. This new version 0.5-4 includes: *) the following new functions: -) KGElf (García et al., 2017), -) sKGE (Fowler et al., 2018),

[R] [R-pkgs] hydroTSM back on CRAN (v0.7-0 released)

2024-01-22 Thread Mauricio Zambrano-Bigiarini
Dear all, After being archived on CRAN on 2023-10-1, hydroTSM is finally back on CRAN since January 18th: https://cran.r-project.org/package=hydroTSM. This new version 0.7-0 has several new functions, improvements, bugfixes, and a new dataset, mostly devoted to work with sub-daily and sub-hourly

[R] [R-pkgs] Copernicus Data Space Ecosystem API Wrapper

2023-12-18 Thread Zivan Karaman
Dear all, I am pleased to announce the release of a new package named 'CDSE' on CRAN. It provides direct access to the 'Copernicus Data Space Ecosystem' for R users. With this package, you can efficiently access the imagery from Sentinel-1, Sentinel-2, Sentinel-3, and Sentinel-5 missions and

Re: [R] R-help Digest, Vol 250, Issue 13

2023-12-15 Thread Karl Ropkins
working >> but there is still something I would like to improve. The X-axis is >> showing 2012.5 ; 2015.0 ; 2017.5 ; 2020.0 >> I would like to see on X-axis only the year (2012 ; 2015 ; 2017 ; >> 2020). How to do? >> >> >> # >> library(ggplo

[R] [R-pkgs] ANOFA: Analysis of frequency data

2023-12-15 Thread Denis Cousineau
A package for the analysis of frequency data, ANOFA, has been released on CRAN. With this package, it is now possible to analyze frequencies following the logic of ANOVAs, by examining interaction effects and main effects, or explore simple effects (with expected marginal frequencies) or

[R] [R-pkgs] simtrial: Clinical Trial Simulation

2023-12-13 Thread Nan Xiao
Dear all, I am happy to announce that {simtrial} is now on CRAN (https://cran.r-project.org/package=simtrial). simtrial is a fast and extensible clinical trial simulation framework for time-to-event endpoints. This release brings a new tabular data processing engine powered by data.table for

[R] [R-pkgs] gsDesign 3.6.0 is released

2023-11-21 Thread Nan Xiao
Dear all, I'm excited to announce that a new version of gsDesign (3.6.0) is now on CRAN (https://cran.r-project.org/package=gsDesign). gsDesign supports group sequential clinical trial design, largely as presented in Jennison and Turnbull (2000). The 3.6.0 update introduces some significant

[R] [R-pkgs] Introducing the makeit package

2023-10-31 Thread Arni Magnusson
Dear R community, Just a quick note about a new package on CRAN called makeit. Yesterday, I added a vignette and released as 1.0.1: https://cran.r-project.org/package=makeit https://cran.r-project.org/web/packages/makeit/vignettes/makeit.html It provides a simple but powerful function make()

Re: [R] R Gigs

2023-10-07 Thread Uwe Ligges
On 07.10.2023 10:45, Dr Eberhard Lisse wrote: LinkedIn is what seems to go these days Well, for those some years older it would certainly help not to use words such as "gigs" (I first assumed gigabytes of data were meant). Apparently the original poster is looking for some employment, but

Re: [R] R Gigs

2023-10-07 Thread Dr Eberhard Lisse
LinkedIn is what seems to go these days el On 2023-10-06 22:35 , Bert Gunter wrote: May be an age gap here, but I assume "gigs" = freelance jobs. If so, https://stat.ethz.ch/mailman/listinfo/r-sig-jobs might be useful. As well as an online search in all the usual places. Otherwise, please

Re: [R] R Gigs

2023-10-06 Thread Jeff Newmiller via R-help
That list is _very_ low volume... most employers who would benefit from the skills of an R user don't know that R exists. On October 6, 2023 1:50:17 PM PDT, Fred Kwebiha wrote: >Thanks Bert. > >I have Subscribed now to that list. > >*Best Regards,* > >*FRED KWEBIHA* >*+256-782-746-154* > > >On

Re: [R] R Gigs

2023-10-06 Thread Fred Kwebiha
Thanks Bert. I have Subscribed now to that list. *Best Regards,* *FRED KWEBIHA* *+256-782-746-154* On Fri, Oct 6, 2023 at 11:36 PM Bert Gunter wrote: > May be an age gap here, but I assume "gigs" = freelance jobs. If so, > https://stat.ethz.ch/mailman/listinfo/r-sig-jobs > might be useful.

Re: [R] R Gigs

2023-10-06 Thread Bert Gunter
May be an age gap here, but I assume "gigs" = freelance jobs. If so, https://stat.ethz.ch/mailman/listinfo/r-sig-jobs might be useful. As well as an online search in all the usual places. Otherwise, please excuse my out-of-date ignorance. Cheers, Bert On Fri, Oct 6, 2023 at 1:23 PM Fred Kwebiha

[R] R Gigs

2023-10-06 Thread Fred Kwebiha
Dear Community, Where Can I get Gigs related to R programming language? Thanks in Advance for your help. *Best Regards,* *FRED KWEBIHA* *+256-782-746-154* [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To

Re: [R] R issue / No buffer space available

2023-10-05 Thread Rui Barradas
Às 21:28 de 04/10/2023, Ohad Oren, MD escreveu: Hello, I keep getting the following message about 'no buffer space available'. I am using R studio via connection to server. I verified that the connection to the server is good. 2023-10-04T20:26:25.698193Z [rsession-oo968] ERROR system error 105

Re: [R] R issue / No buffer space available

2023-10-05 Thread Ben Bolker
This looks like an RStudio issue; it might be better to post the question on their forum On Thu, Oct 5, 2023, 7:43 AM Ohad Oren, MD wrote: > Hello, > > I keep getting the following message about 'no buffer space available'. I > am using R studio via connection to server. I verified that the

[R] R issue / No buffer space available

2023-10-05 Thread Ohad Oren, MD
Hello, I keep getting the following message about 'no buffer space available'. I am using R studio via connection to server. I verified that the connection to the server is good. 2023-10-04T20:26:25.698193Z [rsession-oo968] ERROR system error 105 (No buffer space available) [host: localhost,

[R] [R-pkgs] maptools, rgdal, rgeos and rgrass7 retiring Monday, October 16

2023-10-03 Thread Roger Bivand
The legacy R spatial infrastructure packages maptools, rgdal and rgeos will be archived by CRAN on Monday, October 16, 2023; rgrass7 has already been replaced by rgrass and will be archived with the retiring packages. The choice of date matches the previously announced archiving during

Re: [R] R coding errors

2023-09-08 Thread John Kane
Can you supply us with some sample data? A handy way to supply some sample data is the dput() function. In the case of a large dataset something like dput(head(mydata, 100)) should supply the data we need. Just do dput(mydata) where *mydata* is your data. Copy the output and paste it here. On

[R] R coding errors

2023-09-08 Thread PROFESOR MADYA DR NORHAYATI BAHARUN
Hi Sir, Could you please help me on the following errors: STEPS TO MIX IRT_RMT APPROACH IN R #1- Load required libraries library(eRm) library(ltm) library(mirt) library(psych) HT <- read.csv("C:/Users/User/Dropbox/Analysis R_2023/HT2.csv") str(HT) #2- Load or create your data matrix

Re: [R] R - Problem retrieving memory used after gc() using arrow library

2023-08-16 Thread Ivan Krylov
ocator was not a good fit for R. R allocates and frees lots of objects, sometimes small ones. The Windows 95-era allocator had backwards-compatibility obligations to lots of incorrectly-written programs that sometimes used memory after freeing it and poked at undocumented implementation details a lot [*]. I

[R] R - Problem retrieving memory used after gc() using arrow library

2023-08-16 Thread Kévin Pemonon
Hello, I'm using R versions 4.1.3 on Windows 10 and I'm having a problem with memory usage. Currently, I need to use the arrow and dplyr libraries in a program and when I compare the memory used between the windows task manager and the memory.size(max=F) function, the one given by the windows

Re: [R] R library highcharter function highchart() execute with exception the apparmor read denied for /etc/passwd and /etc/group

2023-08-09 Thread Gu, Jay via R-help
Hi Ivan, I'm running the R within docker container. Do you have any idea about it? Thanks! Best Regards! Jay Gu -Original Message- From: Ivan Krylov Sent: Wednesday, August 9, 2023 3:15 AM To: Gu, Jay via R-help Cc: Gu, Jay Subject: Re: [R] R library highcharter function highchart

Re: [R] R library highcharter function highchart() execute with exception the apparmor read denied for /etc/passwd and /etc/group

2023-08-09 Thread Ivan Krylov
On Wed, 9 Aug 2023 01:13:40 + "Gu, Jay" wrote: > I'm running the R within docker container. In that case (depending on the way the container is set up, of course), your /etc/passwd shouldn't even be a privacy concern. It's most likely identical that in other containers running R. You can

Re: [R] R library highcharter function highchart() execute with exception the apparmor read denied for /etc/passwd and /etc/group

2023-08-08 Thread Ivan Krylov
On Tue, 8 Aug 2023 10:39:15 + "Gu, Jay via R-help" wrote: > Then I execute the function highchart() it always throw the > exception that child process has died. And I checked the > /var/log/kern.log and found below error: > > Aug 7 08:37:50 ip-172-31-27-249 kernel: [2251703.494866] audit:

Re: [R] R library highcharter function highchart() execute with exception the apparmor read denied for /etc/passwd and /etc/group

2023-08-08 Thread Bert Gunter
If you don't get a satisfactory answer here in due course, you can try contacting the package maintainer, who you can find via ?maintainer. Cheers, Bert On Tue, Aug 8, 2023 at 7:50 AM Gu, Jay via R-help wrote: > > Dears, > > > I use the R library highcharter with ubuntu 18.04 and R 3.6.3.

[R] R library highcharter function highchart() execute with exception the apparmor read denied for /etc/passwd and /etc/group

2023-08-08 Thread Gu, Jay via R-help
Dears, I use the R library highcharter with ubuntu 18.04 and R 3.6.3. Recently, I upgraded to ubuntu 20.04 and R 4.3.1. And the version of library highcharter are both 0.9.4. Then I execute the function highchart() it always throw the exception that child process has died. And I checked the

[R] [R-pkgs] sp 2.0-0 released

2023-06-24 Thread Roger Bivand
A new version of the sp package, 2.0-0, has been published on CRAN. This new version defaults to using the sf package rather than the rgdal package, and deprecates use of the rgeos package. These changes are described in https://r-spatial.org/r/2023/05/15/evolution4.html, and lead up to the

Re: [R] R/Spark

2023-06-22 Thread Ivan Krylov
TRUE)), : > > subscript out of bounds The error seems to come from the non-CRAN package sparkinstall, last updated in 2019: https://github.com/rstudio/spark-install/blob/master/R/R/versions.R Try updating all involved packages to their latest versions. If that doesn't help, open

[R] R/Spark

2023-06-21 Thread Jeff Reichman
r-help Trying to install Spark (Windows 11) and R gives me the following error: spark_install(version = "3.4") Error in validVersions[with(validVersions, order(hadoop, decreasing = TRUE)), : subscript out of bounds Any idea what the error is telling me. I guess I can load it

Re: [R] R Tools Security Posture

2023-05-17 Thread Marc Schwartz via R-help
Hi, An additional resource that was not listed below is the R Software Development Life Cycle (SDLC) document that is available here:   https://www.r-project.org/certification.html which addresses a subset of the issues raised. Regards, Marc Schwartz On May 17, 2023 at 4:52:27 AM, Ivan

Re: [R] R Tools Security Posture

2023-05-17 Thread Ivan Krylov
В Tue, 16 May 2023 13:47:19 + "MAJID, Ayesha \(NHS ENGLAND - X26\) via R-help" пишет: > * When was the application last updated? > * How often is it updated? This information is publicly available at by looking for "Release plans". You can reach

[R] R Tools Security Posture

2023-05-17 Thread MAJID, Ayesha (NHS ENGLAND - X26) via R-help
Hi Hope you are well. I work for NHS England and I have been asked to conduct a security review of R, I am unable to locate information around the security posture of R. Would someone please be able to direct me to the correct page or alternatively answer the questions below: * When

[R] [R-pkgs] gsDesign2 1.0.8 is released

2023-05-02 Thread Nan Xiao
Dear all, A new version of gsDesign2 (1.0.8) is now on CRAN (https://cran.r-project.org/package=gsDesign2). gsDesign2 enables fixed or group sequential design under non-proportional hazards and supports highly flexible enrollment, time-to-event, and time-to-dropout assumptions. The key

Re: [R] R-error

2023-04-14 Thread Ivan Krylov
Please keep R-help in the "Copy" list. Please compose your messages in plain text, not HTML. On Thu, 13 Apr 2023 15:59:49 +0800 (GMT+08:00) "Dezhi Wang" wrote: > This is my config.log Please don't send any more screenshots. They are needlessly large and impossible to copy text from. You could

Re: [R] R-error

2023-04-13 Thread Ivan Krylov
On Thu, 13 Apr 2023 14:53:14 +0800 (GMT+08:00) "Dezhi Wang" wrote: > [New Thread 0x7fffe660a700 (LWP 3791)] > [Thread 0x7fffe660a700 (LWP 3791) exited] > Program received signal SIGSEGV, Segmentation fault. > 0x7fffe50c0fe5 in intel_aes_gcmAAD () from > /lib64/libfreeblpriv3.so You didn't

Re: [R] R-error

2023-04-12 Thread Ivan Krylov
On Wed, 12 Apr 2023 16:04:55 +0800 (GMT+08:00) "Dezhi Wang" wrote: > I run R 4.2.2 on CentOS-7.6. Thank you for this useful information. Could you tell us how this build of R was installed on this machine? > > install.packages('sf') > --- Please select a CRAN mirror for use in this session

[R] R-error

2023-04-12 Thread Dezhi Wang
Hello, I run R 4.2.2 on CentOS-7.6. I install package through install.packages("sf").It threw the above error: > install.packages('sf') --- Please select a CRAN mirror for use in this session --- *** caught segfault *** address 0x60, cause 'memory not mapped' Traceback: 1: download.file(url,

[R] [R-pkgs] DNAmixturesLite and KinMixLite

2023-04-12 Thread Peter Green
Dear all, We are pleased to announce that CRAN now hosts our packages DNAmixturesLite and KinMixLite. These are fully R-based versions of our packages DNAmixtures and KinMix, which rely on a commercial software, HUGIN, for performing efficient computations in Bayesian networks. The lite

Re: [R] [R-pkgs] Retirement/archiving of rgdal, rgeos and maptools October 2023

2023-04-10 Thread Stephen H. Dawson, DSL via R-help
Thank you, Roger. Kindest Regards, *Stephen Dawson, DSL* /Executive Strategy Consultant/ Business & Technology +1 (865) 804-3454 http://www.shdawson.com On 4/10/23 11:31, Roger Bivand wrote: The third report on the R-spatial evolution project has been published.

[R] [R-pkgs] Retirement/archiving of rgdal, rgeos and maptools October 2023

2023-04-10 Thread Roger Bivand
The third report on the R-spatial evolution project has been published. https://r-spatial.org/r/2023/04/10/evolution3.html It links back to earlier blogs and presentations, and focuses on work that maintainers of R packages and workflows using rgdal, rgeos and maptools need to put in train

Re: [R] R does not run under latest RStudio

2023-04-07 Thread Hadley Wickham
I'm not aware of widespread problems, but it's possible that some combination of OS, RStudio version, and R version might be causing problems. Unfortunately I don't think there's enough information in this thread for anyone to tell if that's the case. Hadley On Fri, Apr 7, 2023 at 1:18 PM

Re: [R] R does not run under latest RStudio

2023-04-07 Thread CALUM POLWART
Obviously running R is pretty fundamental to running R studio. So it seems rather odd to be thinking you'd need to stop using R studio unless you are doing something odd On Fri, 7 Apr 2023, 02:18 Sorkin, John, wrote: > I have also had difficulty running R in RStudio. Has anyone else had >

Re: [R] R does not run under latest RStudio

2023-04-07 Thread CALUM POLWART
R studio sometimes isn't happy with i386 versions. Although I thought they had put support back in. If you have the option for 64bit, use 64bit R. I've also had similar issues when R couldn't find the executable. But absolutely would expect if you post this on the community forum someone would

Re: [R] R does not run under latest RStudio

2023-04-06 Thread Sorkin, John
I have also had difficulty running R in RStudio. Has anyone else had problems? It will be a shame if we need to abandon R Studio. It is a very good IDE. John John David Sorkin M.D., Ph.D. Professor of Medicine Chief, Biostatistics and Informatics University of Maryland School of Medicine

Re: [R] R does not run under latest RStudio

2023-04-06 Thread Rui Barradas
Às 11:49 de 06/04/2023, Steven Yen escreveu: The RStudio list generally does not respond to free version users. I was hoping someone one this (R) list would be kind enough to help me. Hello, Yes it does. I have asked questions before and got answers that solved my problems as fast as here

Re: [R] R does not run under latest RStudio

2023-04-06 Thread David Winsemius
On 4/6/23 03:49, Steven Yen wrote: The RStudio list generally does not respond to free version users. I was hoping someone one this (R) list would be kind enough to help me. I don't think that is true. It is perhaps true that you cannot get personalized help from employed staff, but you

Re: [R] R does not run under latest RStudio

2023-04-06 Thread Martin Morgan
employee. Martin Morgan From: R-help on behalf of Steven Yen Date: Thursday, April 6, 2023 at 3:20 PM To: Uwe Ligges Cc: R-help Mailing List , Steven T. Yen Subject: Re: [R] R does not run under latest RStudio The RStudio list generally does not respond to free version users. I was hoping

Re: [R] R does not run under latest RStudio

2023-04-06 Thread Duncan Murdoch
On 06/04/2023 6:49 a.m., Steven Yen wrote: The RStudio list generally does not respond to free version users. I was hoping someone one this (R) list would be kind enough to help me. The quality of RStudio has gone way downhill lately. Although Posit is now a big company, I think there are

Re: [R] R does not run under latest RStudio

2023-04-06 Thread Steven Yen
The RStudio list generally does not respond to free version users. I was hoping someone one this (R) list would be kind enough to help me. Steven from iPhone > On Apr 6, 2023, at 6:22 PM, Uwe Ligges > wrote: > > No, but you need to ask on an RStudio mailing list. > This one is about R. > >

Re: [R] R does not run under latest RStudio

2023-04-06 Thread Rui Barradas
Às 11:21 de 06/04/2023, Steven T. Yen escreveu: p.s. But now I click some (but not all)  .R file and cannot see the source code. On 4/6/2023 5:28 PM, Steven T. Yen wrote: I updated to latest RStudio (RStudio-2023.03.0-386.exe) but R would not run. Error message: Error Starting R The R

Re: [R] R does not run under latest RStudio

2023-04-06 Thread John Dougherty via R-help
On Thu, 6 Apr 2023 17:28:32 +0800 "Steven T. Yen" wrote: > I updated to latest RStudio (RStudio-2023.03.0-386.exe) but > R would not run. Error message: > > Error Starting R > The R session failed to start. > > RSTUDIO VERSION > RStudio 2023.03.0+386 "Cherry Blossom " (3c53477a, 2023-03-09)

Re: [R] R does not run under latest RStudio

2023-04-06 Thread Dr Eberhard Lisse
Works without issues on R version 4.2.2 (2022-10-31) -- "Innocent and Trusting" Platform: x86_64-apple-darwin17.0 (64-bit) RStudio Version 2023.03.0+386 (2023.03.0+386) el On 06/04/2023 16:22, John C Frain wrote: > Does R run from a command prompt? If so, the problem is likely due to > your

Re: [R] R does not run under latest RStudio

2023-04-06 Thread John C Frain
Does R run from a command prompt? If so, the problem is likely due to your Rstudio setup. If R does not run from a command prompt, any error messages might give some idea of the problem. I can run R and Rstudio in Windows 11?, Windows 10 and the current version of Linux Mint. On Thu 6 Apr

Re: [R] R does not run under latest RStudio

2023-04-06 Thread Uwe Ligges
No, but you need to ask on an RStudio mailing list. This one is about R. Best, Uwe Ligges On 06.04.2023 11:28, Steven T. Yen wrote: I updated to latest RStudio (RStudio-2023.03.0-386.exe) but R would not run. Error message: Error Starting R The R session failed to start. RSTUDIO VERSION

Re: [R] R does not run under latest RStudio

2023-04-06 Thread Steven T. Yen
p.s. But now I click some (but not all)  .R file and cannot see the source code. On 4/6/2023 5:28 PM, Steven T. Yen wrote: I updated to latest RStudio (RStudio-2023.03.0-386.exe) but R would not run. Error message: Error Starting R The R session failed to start. RSTUDIO VERSION RStudio

[R] R does not run under latest RStudio

2023-04-06 Thread Steven T. Yen
I updated to latest RStudio (RStudio-2023.03.0-386.exe) but R would not run. Error message: Error Starting R The R session failed to start. RSTUDIO VERSION RStudio 2023.03.0+386 "Cherry Blossom " (3c53477a, 2023-03-09) for Windows [No error available] I also tried RStudio 2022.12.0+353 ---

[R] [R-pkgs] {clarify}: Simulation-Based Inference for Regression Models

2023-02-02 Thread Greifer, Noah
Hello everyone, Our new package {clarify} has been released. {clarify} provides simulation-based inference as an alternative to the delta method for interpretable quantities derived from model parameters, like average marginal effects, dose-response functions, and predictions at representative

[R] [R-pkgs] New package - LGDtoolkit

2023-01-31 Thread Andrija Djurovic
Dear all, my new R package LGDtoolkit is now on CRAN. The goal of this package is to cover the most common steps in Loss Given Default (LGD) rating model development. The main procedures available are those that refer to bivariate and multivariate analysis. In particular two statistical methods

Re: [R] R installation

2023-01-26 Thread Bert Gunter
What is the error, **exactly**? Bert On Thu, Jan 26, 2023 at 9:12 AM Vivian Jungels via R-help < r-help@r-project.org> wrote: > Hello! > > I am trying to install R and its says there is an error with the software. > I am using the link for Mac OS the most recent version on the website > because

Re: [R] R installation

2023-01-26 Thread Kevin Thorpe
If you used this link for R-4.2.2-arm64.pkg then I have no other ideas. The r-sig-mac list can probably help you more, but there is the possibility you will get help here. > On Jan 26, 2023, at 12:19 PM, Vivian Jungels wrote: > > I have an M1 Mac with OS 13.2 so I did the most recent version

Re: [R] R installation

2023-01-26 Thread Kevin Thorpe
The most obvious question is did you download the correct package? There is a version for Intel-based MACs and for M1-based MACs. > On Jan 25, 2023, at 11:22 AM, Vivian Jungels via R-help > wrote: > > Hello! > > I am trying to install R and its says there is an error with the software. I

[R] R installation

2023-01-26 Thread Vivian Jungels via R-help
Hello! I am trying to install R and its says there is an error with the software. I am using the link for Mac OS the most recent version on the website because my Mac OS is M1 and 13.2 version. I am able to download it but then when I install it it says they’re an error with the software that

Re: [R] R emulation of FindRoot in Mathematica

2023-01-23 Thread Troels Ring
Dear Leonard - thanks a lot for the solution! Yes, you are right: pH is presumed known, so the effort is repeated at a series of chosen pH values.  It appears that no matter x0 the estimate for atp is always -6.239560e-01 which even accounting for offset of 0.008 is negative which is not

Re: [R] R emulation of FindRoot in Mathematica

2023-01-22 Thread Leonard Mada via R-help
Dear Troels, There might be an error in one of the eqs: # [modified] TODO: check; mg2atp <- 10^(-7)*Mg*mgatp; This version works: x0 = c(     atp = 0.008,     adp = 0.1,     pi = 0.003,     pcr = 0.042,     cr = 0.004,     lactate = 0.005 ) / 30; # solved the positive value x0[1] =

Re: [R] R emulation of FindRoot in Mathematica

2023-01-22 Thread Leonard Mada via R-help
Dear Troels, I send you an updated version of the response. I think that a hybrid approach is probably the best solution: - Input / Starting values = free: ATP, ADP, Crea, CreaP, lactate, inorganic phosphate; - Output: diff(Total, given total value); - I assume that the pH is given; - I did NOT

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