Re: [R] sequence clustering and assembly

2010-04-15 Thread Martin Morgan
Hi Bogdan -- On 04/14/2010 08:19 PM, Bogdan Tanasa wrote: > Dear all, > > please could you suggest any R functions or packages (or external > programs), that likely you'll have more luck on the Bioconductor mailing list, http://bioconductor.org/docs/mailList.html but... > a. take as input a la

Re: [R] sequence clustering and assembly

2010-04-15 Thread David Winsemius
On Apr 14, 2010, at 11:19 PM, Bogdan Tanasa wrote: Dear all, please could you suggest any R functions or packages (or external programs), that a. take as input a large number (> 10 000) of short 20-30 nt sequences, and do sequence assembly, to reconstruct larger (extended) 30-50 sequenc

[R] sequence clustering and assembly

2010-04-14 Thread Bogdan Tanasa
Dear all, please could you suggest any R functions or packages (or external programs), that a. take as input a large number (> 10 000) of short 20-30 nt sequences, and do sequence assembly, to reconstruct larger (extended) 30-50 sequences ? b. take as input a larger number of sequences (100 000