Re: [R] scatter plot with 1 standard deviation for each point

2007-10-21 Thread Jim Lemon
FD wrote: Hi, Could anyone give suggestions how to plot a scatter plot with 1 standard deviation for each point. To make it clearer, here is a simple example: the scatterplot is plot(X, Y), but I want to add 1 standard deviation according to the value of Z for each Y. X Y Z 1

[R] image 256 x 920 data points too slow

2007-10-21 Thread baptiste Auguié
Dear R gurus, I'm trying to visualize a matrix 256 x 920 using image(), but i find the display too slow (~ 1 minute –– admittedly, my iBook G4 isn't very fast). The aim is not to get a good resolution image, but rather have a quick look at the matrix. I couldn't find a way to plot a

[R] Setting a pdf reader different from acroread under *nix

2007-10-21 Thread Vittorio . De . Martino . vdemart1
Under FreeBSD 6.2 I installed R 2.6.0. Trying to load e.g. vignette(zoo) R calls acroread automagically. I instead would like to use the lighter kde built-in pdf reader kGhostView- Is this possible? Vittorio __ R-help@r-project.org mailing list

[R] Error in if loop

2007-10-21 Thread stat stat
I have created a if loop as follows: name = e if (name == v) { u = 0 } else u = 1 however i am getting error : Error: unexpected 'else' in else definitely I can write in : ifelse() form, however I want to write in this way. Can anyone tell me where is my error? thanks in advance

Re: [R] formatting a list

2007-10-21 Thread Tomas Vaisar
Hi Jim, thanks a lot. It works, however - my other problem is that I need to transpose the original table before reading it into the list because the data come from Excel and it can't handle 7000 columns. I could read it in R transpose end write into a new tab delim file and then read it

Re: [R] Error in if loop

2007-10-21 Thread Mark Wardle
On 21/10/2007, stat stat [EMAIL PROTECTED] wrote: I have created a if loop as follows: name = e if (name == v) { u = 0 } else u = 1 however i am getting error : Error: unexpected 'else' in else There are 3 issues here: 1. Do you appreciate the difference between ifelse and if ?

Re: [R] Error in if loop

2007-10-21 Thread stat stat
Dear Mark, Thanks for this. Can you please explain me what is the difference between ifelse and if? generally if there is more than one syntax within the 'if' I use 'if' loop otherwise I use 'ifelse' loop. Is it the only difference between them? Mark Wardle [EMAIL PROTECTED] wrote: On

Re: [R] Setting a pdf reader different from acroread under *nix

2007-10-21 Thread Dirk Eddelbuettel
On 21 October 2007 at 09:39, Douglas Bates wrote: | On 10/21/07, [EMAIL PROTECTED] | [EMAIL PROTECTED] wrote: | Under FreeBSD 6.2 I installed R 2.6.0. | Trying to load e.g. vignette(zoo) R calls acroread automagically. | I instead would like to use the lighter kde built-in pdf reader

[R] exporting text output to pdf

2007-10-21 Thread Jesse D Lecy
Hello, I am new to R and I am trying to figure out how to print text output from an operation like table() to a pdf file. Is there a simple command to do this, or do you need to work with connections at a rudimentary level? Thanks you, Jesse [[alternative HTML version deleted]]

Re: [R] exporting text output to pdf

2007-10-21 Thread Gabor Grothendieck
Look at the xtable package and latex in the Hmisc package. On 10/21/07, Jesse D Lecy [EMAIL PROTECTED] wrote: Hello, I am new to R and I am trying to figure out how to print text output from an operation like table() to a pdf file. Is there a simple command to do this, or do you need to

Re: [R] formatting a list

2007-10-21 Thread jim holtman
What is it that you want to do? The 'scan' statement give you a list of length 7000 with 19 entries each. Do you want to create a matrix that has 7000 rows by 19 columns? If so, then you just have to take the output of the 'scan' and do: x.matrix - do.call('rbind', x) # gives 7000 x 19

Re: [R] exporting text output to pdf

2007-10-21 Thread Dieter Menne
Gabor Grothendieck ggrothendieck at gmail.com writes: Look at the xtable package and latex in the Hmisc package. On 10/21/07, Jesse D Lecy jdlecy at maxwell.syr.edu wrote: .. I am new to R and I am trying to figure out how to print text output from an operation like table() to a pdf file.

Re: [R] image 256 x 920 data points too slow

2007-10-21 Thread baptiste Auguié
Thanks, it works nicely. In the meantime, I came across a similar approach taken in the documentation of ggplot2, using a small sample of the diamonds data. Thanks all again, baptiste On 21 Oct 2007, at 12:25, Katharine Mullen wrote: I'm not aware of any existing function that does what

[R] Help installing Rstem package

2007-10-21 Thread Filipe Almeida
Hi to all, Hi have a dificult installing the Rstem package from Duncan Lang ( http://www.omegahat.org/Rstem/). I use 2.6.0 R version, and 0.2-3 from the tm package. I can't get a correct instalation of this packages and I tryed some ways to pass this problem but with no sucess. Anyone can help

Re: [R] Help installing Rstem package

2007-10-21 Thread Duncan Temple Lang
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Filipe Almeida wrote: Hi to all, Hi have a dificult installing the Rstem package from Duncan Lang ( http://www.omegahat.org/Rstem/). I use 2.6.0 R version, and 0.2-3 from the tm package. I can't get a It is helpful to tell us that you are on

Re: [R] Help installing Rstem package

2007-10-21 Thread Prof Brian Ripley
You are using WIndows (unstated). There is a binary available, and using 1) Packages | Select repositories select Omegahat 2) Packages | Install packages select Rstem works for me. On Sun, 21 Oct 2007, Filipe Almeida wrote: Hi to all, Hi have a dificult installing the Rstem package

Re: [R] Error in if loop

2007-10-21 Thread Mark Wardle
No. Think of if only as a means to control program flow. Use ifelse to use conditional logic on each item of a vector Best wishes, Mark On 21/10/2007, stat stat [EMAIL PROTECTED] wrote: Dear Mark, Thanks for this. Can you please explain me what is the difference between ifelse and if?

Re: [R] formatting a list

2007-10-21 Thread Tomas Vaisar
The data I have is tab delimited file with 7000 lines of 19 values each (representing 7000 permutations on 19 variables). I want to get it into the ROCR package which expects the data to be in lists - single list of 19 values for each permutation, e.g. list of 7000 lists of 19 values each. I

Re: [R] formatting a list

2007-10-21 Thread jim holtman
That is what I thought and that is the format that the 'scan' approach should provide. I was just confused when you said that you were going to have to transpose it, write it and then read it back in for some reason. I understand that Excel can not handle 7000 columns, but was wondering where

[R] [R-pkgs] ggplot2 - version 0.5.6

2007-10-21 Thread hadley wickham
ggplot2 === ggplot2 is a plotting system for R, based on the grammar of graphics, which tries to take the good parts of base and lattice graphics and avoid bad parts. It takes care of many of the fiddly details that make plotting a hassle (like drawing legends) as

[R] Sweave Xtable row names

2007-10-21 Thread Klaus Friis Østergaard
Hi, How do one avoid rownames when xtable is used to make tables for Latex. = MSe - 0.12 MSa - 0.15 MSap - 0.13 MSp - 0.14 k - 5 n - 4 r - 30 EV - 5.15*sqrt(MSe) AV - 5.15*sqrt((MSa - MSap)/(n *k)) Iap - 5.15 * sqrt((MSap-MSe)/r) GRR - sqrt((EV)^2 + (AV)^2 + (Iap)^2) PV - 5.15 * sqrt((MSp

Re: [R] Sweave Xtable row names

2007-10-21 Thread Gabor Grothendieck
See ?print.xtable, e.g. print(x, include.rownames = FALSE) On 10/21/07, Klaus Friis Østergaard [EMAIL PROTECTED] wrote: Hi, How do one avoid rownames when xtable is used to make tables for Latex. = MSe - 0.12 MSa - 0.15 MSap - 0.13 MSp - 0.14 k - 5 n - 4 r - 30 EV -

Re: [R] Sweave Xtable row names

2007-10-21 Thread Klaus Friis Østergaard
2007/10/22, Gabor Grothendieck [EMAIL PROTECTED]: See ?print.xtable, e.g. print(x, include.rownames = FALSE) Thanks -- Klaus F. Østergaard, farremosen(at)gmail dot com [[alternative HTML version deleted]] __ R-help@r-project.org mailing

[R] Test

2007-10-21 Thread ishii kazuo
This is test reply. Please ignore my email -- 石井一夫 日本Rubyの会 [EMAIL PROTECTED] http://officeparis.org/blog/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

[R] Format of a data frame

2007-10-21 Thread Thomas L Jones, PhD
The goal is to smooth a scatterplot using the LOESS locally weighted regression program and a gam. There are 156 points. Thus x can have the value 1, or 2, etc., up to a maximum of x = 156. The y values are random, with a Poisson distribution, or the next thing to it. After reading in the

Re: [R] Format of a data frame

2007-10-21 Thread jim holtman
If you look at the example for predict.gam, it should be clear that the data frame has a column(s) for the value(s) you want to predict for: newd - data.frame(x0=(0:30)/30,x1=(0:30)/30,x2=(0:30)/30,x3=(0:30)/30) pred - predict.gam(b,newd) head(newd) x0 x1 x2

[R] Newbie help: Data in an arma fit

2007-10-21 Thread caffeine
I'd like to fit an ARMA(1,1) model to some data (Federal Reserve Bank interest rates) that looks like: ... 30JUN2006, 5.05 03JUL2006, 5.25 04JUL2006, N lt; here! 05JUL2006, 5.25 ... One problem is that holidays have that N for their data. As a test, I tried fitting

Re: [R] Input appreciated: R teaching idea + a way to improve R-wiki

2007-10-21 Thread Ricardo Pietrobon
Bill, very interesting comment. However, do you believe that by posting these tutorials on a wiki they could, even if initially faulty, be improved by the community over time? Ricardo On 10/22/07, [EMAIL PROTECTED] [EMAIL PROTECTED] wrote: I think you need to see how things work before

[R] strsplit

2007-10-21 Thread Edna Bell
Hello R Gurus: I would like to take a character string and split at the $ sign. I thought that strsplit would do it, but here are the results: vv [1] whine$ts1 vv [1] whine$ts1 strsplit(vv,$) [[1]] [1] whine$ts1 Does anyone have any suggestions, please? Thanks, Edna Bell

Re: [R] loess coefficients output

2007-10-21 Thread Prof Brian Ripley
loess() is a 'local' fitting procedure, which means that it fits a different regression at each prediction point. (In principle, for there are computational short cuts: see ?loess.control.) Since each fit is only used for a single prediction, its coeffiicients are not of interest and not made

Re: [R] strsplit

2007-10-21 Thread Moshe Olshansky
Try strsplit(vv,$,fixed=TRUE) --- Edna Bell [EMAIL PROTECTED] wrote: Hello R Gurus: I would like to take a character string and split at the $ sign. I thought that strsplit would do it, but here are the results: vv [1] whine$ts1 vv [1] whine$ts1 strsplit(vv,$) [[1]] [1]

Re: [R] strsplit

2007-10-21 Thread Prof Brian Ripley
On Mon, 22 Oct 2007, Edna Bell wrote: Hello R Gurus: I would like to take a character string and split at the $ sign. I thought that strsplit would do it, but here are the results: vv [1] whine$ts1 vv [1] whine$ts1 strsplit(vv,$) [[1]] [1] whine$ts1 Does anyone have any