Stefan Uhmann wrote:
Dear List, Dear Jim,
is it possible to draw multiple polygons with different line types?
lty=c or line.lty=c do not work with radial.plot (in the matrix case)
as well as add=TRUE.
Hi Stefan,
As this is the second request for multiple line characteristics this
week, I
Dear all,
I have a repository file (let's call it repo.txt)
that contain two columns like this:
# tag value
AAA0.2
AAT0.3
AAC 0.02
AAG 0.02
ATA0.3
ATT 0.7
Given another query vector
qr - c(AAC, ATT)
I would like to find the corresponding value for each query above,
On Fri, 2009-01-16 at 18:02 +0900, Gundala Viswanath wrote:
Dear all,
I have a repository file (let's call it repo.txt)
that contain two columns like this:
# tag value
AAA0.2
AAT0.3
AAC 0.02
AAG 0.02
ATA0.3
ATT 0.7
Given another query vector
qr - c(AAC,
you might try to iteratively read a limited number of line of lines in a
batch using readLines:
# filename, the name of your file
# n, the maximal count of lines to read in a batch
connection = file(filename, open=rt)
while (length(lines - readLines(con=connection, n=n))) {
# do your stuff
Hi all,
I tried to read data from Excel spread sheet with using
read.csv(file.choose())
and
read.delim(file.choose())
but its showing *ÐÏ.à.*.
and also i tried with
read.table(file.choose())
then its showing* V1
1
The sqldf package can read a large file to a database without going
through R followed by extracting it. The package makes it easier
to use RSQLite by setting up the database for you and after extracting
the portion you want removing the database automatically. You can
specify all this in two
Hi,
http://tolstoy.newcastle.edu.au/R/e2/help/06/12/6702.html
Cheers,
Thomas
venkata kirankumar schrieb:
Hi all,
I tried to read data from Excel spread sheet with using
read.csv(file.choose())
and
read.delim(file.choose())
but its showing *ÐÏ.à.*.
and also i tried with
See the 'R Data Import/Export' manual (and please study the posting
guide, which asked you to check the manuals before posting).
On Fri, 16 Jan 2009, venkata kirankumar wrote:
Hi all,
I tried to read data from Excel spread sheet with using
read.csv(file.choose())
and
Hi all,
I want to calculate the number of unique observations of y in each level
of x from my data frame df.
this does the job but it is very slow for this big data frame (159503 rows,
11 columns).
group.list - split(df$y,df$x)
count - function(x) length(unique(na.omit(x)))
Something like this should work
library(R.utils)
out = numeric()
qr = c(AAC, ATT)
n =countLines(test.txt)
file = file(test.txt, r)
for (i in 1:n){
line = readLines(file, n = 1)
A = strsplit (line, split = )[[1]][1]
if(is.element(A, qr)) {
value = as.numeric(strsplit (line, split = )[[1]][2])
Hi, I wrote the function which outputs a matrix 'c' and a single value 'd',
as follows (simplified example):
procedure - function(a,b){
...
list(c,d)
}
now I want to use 'c' and 'd' in code as follows:
d - matrix(0,1,1)
value - procedure(a,b)
and d[1,1] - value[2] breaks telling that:
Error in
Maybe:
with(df, tapply(y, x, count))
On Fri, Jan 16, 2009 at 8:10 AM, Simon Pickett simon.pick...@bto.orgwrote:
Hi all,
I want to calculate the number of unique observations of y in each level
of x from my data frame df.
this does the job but it is very slow for this big data frame
Hello group!
Is there a package that allows to fit smooth *periodic* splines to
data? I'm interested in a function which combines the functionality of
smooth.spline and splines::periodicSpline.
Thanks,
Andrey
__
R-help@r-project.org mailing list
df = data.frame(x = sample(7:9, 100, rep = T), y = sample(1:5, 100, rep
= T))
fun = function(x){length(unique(x))}
by(df$x, df$y, fun)
Simon Pickett wrote:
Hi all,
I want to calculate the number of unique observations of y in each
level of x from my data frame df.
this does the job but it
Hi,
I am beginner with R and need firm guidance with my problem. I have seen
some other threads discussing the subject of right censored data, but I am
not sure whether or not this problem can be regarded as such.
Data:
I have a vector with laboratory test data (strength of wood specimens,
Just for the records. The problem was that the R version Rscript
starts is determined at compile time, and I had to move my R
installation to another place for some technical reasons. At the
compile-time place there was another R version and Rscript started
that one.
The solution was to create a
if the file is really large, reading it twice may add considerable penalty:
r...@quantide.com wrote:
Something like this should work
library(R.utils)
out = numeric()
qr = c(AAC, ATT)
n =countLines(test.txt)
# 1st pass
file = file(test.txt, r)
for (i in 1:n){
# 2nd pass
line =
I agree on the database solution.
Database are the rigth tool to solve this kind of problem.
Only consider the start up cost of setting up the database. This could
be a very time consuming task if someone is not familiar with database
technology.
Using file() is not a real reading of all the
Hi,
R version 2.2.1 is slightly old. You may want to upgrade to the current
version, R.2.8.1!!!
You can for example do
library(doBy)
dd - data.frame(x=c(1,1,1,2,2,2), y=c(1,1,2, 1,1,1))
summaryBy(y~x, data=dd, FUN=function(x)length(unique(x)))
Regards
Søren
-Oprindelig meddelelse-
Häring, Tim (LWF) wrote:
Hi list,
I´m working on a predictive modeling task using the caret package.
I found the best model parameters using the train() and trainControl() command.
Now I want to evaluate my model and make predictions on a test dataset. I tried
to follow the instructions in
Kum-Hoe Hwang wrote:
Hi, Gurus
Thanks to your good helps, I have managed starting the use of a text
mining package so called tm in R under the OS of Win XP.
However, during running the tm package, I got another mine like memory problem.
What is a the best way to solve this memory problem
threshold wrote:
Hi, I wrote the function which outputs a matrix 'c' and a single value 'd',
as follows (simplified example):
procedure - function(a,b){
...
list(c,d)
}
now I want to use 'c' and 'd' in code as follows:
d - matrix(0,1,1)
value - procedure(a,b)
and d[1,1] - value[2] breaks
Thomas Schwander wrote:
Dear all,
I'm using R 2.8.1 under Vista.
I programmed a Simulation with the code enclosed at the end of the eMail.
After the simulation I want to analyse the columns of the single
simulation-runs, i.e. e.g. Simulation[[1]][,1] sth. like that but I
cannot address
r...@quantide.com wrote:
Using file() is not a real reading of all the file. This function will
simply open a connection to the file without reading it.
countLines should do something lile wc -l from a bash shell
just for a test:
cat(rep('', 10^7), file='test.txt', fill=1)
library(R.utils)
r...@quantide.com wrote:
I agree on the database solution.
Database are the rigth tool to solve this kind of problem.
Only consider the start up cost of setting up the database. This could
be a very time consuming task if someone is not familiar with database
technology.
and won't pay if you
Sake wrote:
Hi,
I'm trying to make a chromosomal map in R by using the locus. I have a
list of genes and their locus, and I want to visualise that so you can see
if there are multiple genes on a specific place on a chromosome. A example
of what I more or less want is below:
Neil Shephard wrote:
Whats wrong with things like the HapMap Genome Browser that allows you to
zoom in and out and to produce customised annotations of chromosomal
regions at varying resolutions (see http://www.hapmap.org/)? Of course
I'm assuming that you are looking at human
zubin-2 wrote:
Hello, I am getting requests to place our PDF slides (output from
beamer) into Microsoft Powerpoint formats (.ppt). What's the best
practice or any recommended software packages (any success with open or
commercial) that we can use to convert PDF slides into an EDITABLE
Dear,
I am trying to get a prediction of my GAM on a response type. So that I
eventually get plots with the correct values on my ylab.
I have been able to get some of my GAM's working with the example shown
below:
*
model1-gam(nsdall ~ s(jdaylitr2), data=datansd)
newd1 -
cmr.p...@gmail.com wrote:
Hello group!
Is there a package that allows to fit smooth *periodic* splines to
data? I'm interested in a function which combines the functionality of
smooth.spline and splines::periodicSpline.
I don't know one, but you could use the same technique that
On Fri, Jan 16, 2009 at 5:52 AM, r...@quantide.com r...@quantide.com wrote:
I agree on the database solution.
Database are the rigth tool to solve this kind of problem.
Only consider the start up cost of setting up the database. This could be a
very time consuming task if someone is not
I´m a really R beginer,
so I have a simply question.
I would like to rename a vector in a loop.
I´d like to have as output:
vector1-whatever
vector2-whatever
vector3-whatever
etc..
so I thought it´s easily
for (s in c(1:3)){
vectorn- whatever
}
but I´m getting an error.
cheers
--
View
Its a FAQ:
http://cran.r-project.org/doc/FAQ/R-FAQ.html#How-can-I-turn-a-string-into-a-variable_003f
On Fri, Jan 16, 2009 at 6:58 AM, canadiangirl19 canadiangir...@sms.at wrote:
I´m a really R beginer,
so I have a simply question.
I would like to rename a vector in a loop.
I´d like to
Kiran,
One, not very elegant way, to solve your problem is to first save the
Excel spreadsheet as a CSV file (open the Excel file in Excel and the
use file-save as CSV, i.e. xxx.CSV) and then use read.csv()
John
John David Sorkin M.D., Ph.D.
Chief, Biostatistics and Informatics
University of
On Fri, 2009-01-16 at 12:36 +0100, Robbert Langenberg wrote:
Dear,
I am trying to get a prediction of my GAM on a response type. So that I
eventually get plots with the correct values on my ylab.
I have been able to get some of my GAM's working with the example shown
below:
*
Hello,
I have a list of character vectors like this:
sequences - list(
c(M,G,L,W,I,S,F,G,T,P,P,S,Y,T,Y,L,L,I,M,
N,H,K,L,L,L,I,N,N,N,N,L,T,E,V,H,T,Y,F,
N,I,N,I,N,I,D,K,M,Y,I,H,*)
)
and another list of subset ranges like this:
indexes - list(
list(
c(1,22),c(22,46),c(46,
On Jan 16, 2009, at 5:22 AM, threshold wrote:
Hi, I wrote the function which outputs a matrix 'c' and a single
value 'd',
as follows (simplified example):
procedure - function(a,b){
...
list(c,d)
}
now I want to use 'c' and 'd' in code as follows:
d - matrix(0,1,1)
value - procedure(a,b)
Hi,
I ran into this issue previously and managed to solve it, but I've
forgotten how and am getting frustrated...
I have a data frame (see below) with scandinavian characters in R
(2.7.1) running on a Win Xp-computer. I save the data frame in an
RData-file on a usb stick, and load() it in R
Dear Johannes,
Try this:
sequences - c(M,G,L,W,I,S,F,G,T,P,P,S,Y,T,
Y,L,L,I,M,N,H,K,L,L,L,I,N,N,N,N,L,T,E,V,
H,T,Y,F,N,I,N,I,N,I,D,K,M,Y,I,H,*)
indexes - matrix(c(1,22,22,46,46,51,1,46,22,51,1,51),ncol=2,byrow=TRUE)
apply(indexes,1,function(x){
ind- x[1]:x[2]
Try this:
lapply(indexes[[1]], function(g)sequences[[1]][do.call(seq, as.list(g))])
On Fri, Jan 16, 2009 at 11:06 AM, Johannes Graumann
johannes_graum...@web.de wrote:
Hello,
I have a list of character vectors like this:
sequences - list(
c(M,G,L,W,I,S,F,G,T,P,P,S,Y,T,Y,L,L,I,M,
You need to use CP1252 not UTF-8 to read the data. It tells you how
to do so on the help page ... under 'encoding'. So something like
A - read.table(con - file(myfile, encoding=CP1252));close(con)
Please don't cross-post ... I am being brief because you did.
On Fri, 16 Jan 2009, Gustaf
dear R experts:
I am playing with boxplots for the first time. most of it is
intuitive, although there was less info on the web than I had hoped.
alas, for some odd reason, my R boxplots have some fat black dots, not
just the hollow outlier plots. Is there a description of when R draws
hollow
Thanks for the swift reply,
I might have been a bit sloppy with describing my datasets and problem. I
showed the first model as an example of the type of GAM that I had been able
to use the predict function on. What I am looking for is how to predict my
m3:
or maybe by using the xlsReadWrite package:
mydata - read.xls(mydata.xls, sheet = 'Sheet1)
On Fri, Jan 16, 2009 at 4:32 AM, venkata kirankumar
kiran4u2...@gmail.com wrote:
Hi all,
I tried to read data from Excel spread sheet with using
read.csv(file.choose())
and
ivo welch kirjoitti:
dear R experts:
I am playing with boxplots for the first time. most of it is
intuitive, although there was less info on the web than I had hoped.
alas, for some odd reason, my R boxplots have some fat black dots, not
just the hollow outlier plots. Is there a
Hi Ivo,
ivo welch wrote:
alas, for some odd reason, my R boxplots have some fat black dots, not
just the hollow outlier plots. Is there a description of when R draws
hollow vs. fat dots somewhere?
[and what is the parameter to change just the size of these dots?]
Have you tried the command
Sake tlep.nav.e...@hccnet.nl writes:
Neil Shephard wrote:
Whats wrong with things like the HapMap Genome Browser that allows you to
zoom in and out and to produce customised annotations of chromosomal
regions at varying resolutions (see http://www.hapmap.org/)? Of course
I'm assuming
Hi,
Robbert Langenberg mcrelay at gmail.com writes:
I am trying to get a prediction of my GAM on a response type. So that I
eventually get plots with the correct values on my ylab.
The problem I am encountering now is that I cannot seem to get it done for
the following type of model:
Hello,
This code builds a simple example of 2 wireframes :
require(lattice)
x - c(1:10)
y - c(1:10)
g - expand.grid(x = 1:10, y = 1:10, gr = 1:2)
g$z - c(as.vector(outer(x,y,*)), rep(50,100))
wireframe(z ~ x * y, data = g, groups = gr, scales = list(arrows =
FALSE))
However, the
Hi
r-help-boun...@r-project.org napsal dne 16.01.2009 15:24:26:
dear R experts:
I am playing with boxplots for the first time. most of it is
intuitive, although there was less info on the web than I had hoped.
alas, for some odd reason, my R boxplots have some fat black dots, not
just
Hi,
On my system (see below), it works fine (inputing the code below at
the R prompt). Make sure that the encoding of the input file is
encoded UTF-8.
Rgds,
Ivan
sessionInfo()
R version 2.8.1 Patched (2009-01-14 r47602)
i386-apple-darwin9.6.0
locale:
Thank you, David!
I agree and apprechiate your analysis, which definitely will influence my
analysis of this data, but still I would like you to disregard from it(!)
The standard routine in the field is, beyond my control, to assume
lognormal distribution to achieve comparable results also with
Hi
Is any multiple regression-like test with correction for
autocorrelation ?
If I understand your question, yes. Take a look at the spdep package for
starters. Also you may find the following references helpful.
Dormann et al. 2007. Methods to account for spatial autocorrelation in the
Hi Gabor,
Do you mean storing data in sqldf', doesn't take memory?
For example, I have 3GB data file. with standard R object using read.table()
the object size will explode twice ~6GB. My current 4GB RAM
cannot handle that.
Do you mean with sqldf, this is not the issue?
Why is that?
Sorry for
Only the portion your extract is ever in R -- the file itself is read
into a database
without ever going through R so your memory requirements correspond to what
you extract, not the size of the file.
On Fri, Jan 16, 2009 at 10:49 AM, Gundala Viswanath gunda...@gmail.com wrote:
Hi Gabor,
Do
Hi,
I'm trying to run an R script using Rcmd Batch from the command line on a
Windows Vista machine. I am using R version 2.8.1.
I installed the batch files 4-3 found at
http://cran.r-project.org/contrib/extra/batchfiles/ and added them to my
path.
I also had to install the latest version of
Try writing BATCH in upper case.
On Fri, Jan 16, 2009 at 10:51 AM, Brigid Mooney bkmoo...@gmail.com wrote:
Hi,
I'm trying to run an R script using Rcmd Batch from the command line on a
Windows Vista machine. I am using R version 2.8.1.
I installed the batch files 4-3 found at
Hi,
Unless you specify an in-memory database the database is stored on disk.
Thanks for your explanation.
I just downloaded 'sqldf'.
Where can I find the option for that? In sqldf I can't see the command.
I looked at:
envir = parent.frame()
doesn't appear to be the one.
- Gundala Viswanath
test = c ( AAABBB, CCC )
This works :
gsub ( [A-Z], 2, test )
None of these do :
gsub ( [A-Z], [:alnum:], test )
gsub ( [A-Z], [[:alnum:]], test )
gsub ( [A-Z], [:alnum:], test )
gsub ( [A-Z], [[:alnum:]], test )
gsub ( [A-Z], ^[:alnum:]$, test )
What am I doing wrong, please ?
--
If that refers to using a database on disk to temporarily hold
the file then example 6 on the home page shows it, as mentioned,
and you may wish to look at the other examples there too and
there is further documentation in the ?sqldf help file.
On Fri, Jan 16, 2009 at 11:11 AM, Gundala Viswanath
on 01/16/2009 10:13 AM ppaarrkk wrote:
test = c ( AAABBB, CCC )
This works :
gsub ( [A-Z], 2, test )
None of these do :
gsub ( [A-Z], [:alnum:], test )
gsub ( [A-Z], [[:alnum:]], test )
gsub ( [A-Z], [:alnum:], test )
gsub ( [A-Z], [[:alnum:]], test )
gsub ( [A-Z],
On 1/16/2009 10:51 AM, Brigid Mooney wrote:
Hi,
I'm trying to run an R script using Rcmd Batch from the command line on a
Windows Vista machine. I am using R version 2.8.1.
I installed the batch files 4-3 found at
http://cran.r-project.org/contrib/extra/batchfiles/ and added them to my
path.
I'm attaching a file foo.Rnw and I'm hoping some of you might run it
through your R latex systems to find out if the double-quotes in
typewriter font turn out as black boxes (as they do for me). If you
don't use Sweave, but you have a system with a working version of R
and LaTeX, the file gives
Paul Johnson pauljohn32 at gmail.com writes:
I'm attaching a file foo.Rnw and I'm hoping some of you might run it
through your R latex systems to find out if the double-quotes in
typewriter font turn out as black boxes (as they do for me). If you
don't use Sweave, but you have a system
Paul,
The file did not make it to the list.
Did you try loading Sweave with the 'noae' option, that is:
\usepackage[noae]{Sweave}
This *may* solve your issue.
HTH Vincent
Le ven. 16 janv. à 11:31, Paul Johnson a écrit :
I'm attaching a file foo.Rnw and I'm hoping some of you might
Dear users,
i just installed the lastest version of R, 2.8.1 on my computer (OS Windows
XP). Then i tried to update the packages copied from my old R version by
update.packages(ask=F)
However i get the following warning:
Warning: unable to access index for repository
On Fri, Jan 16, 2009 at 10:43 AM, David Winsemius
dwinsem...@comcast.net wrote:
Dear Dr Johnson;
I'm not sure if you get copies of your posts. If you do can you check to see
if the list-server kept the attachment? My copy did not have one.
--
Best
David winsemius
Hm. Well, I do get the
I've been trying to install some R packages such as mclust and flexmix on linux
but have had the following error messages.
I've been trying to install mclust on my notebook which has linpus linux lite
os and I have installed R as well as some packages all right. However, when
I tried to
Dear all,
Can anybody help me with an RExcel tutorial? Maybe some example on which
functions can be used/how to use it... I have installed it on my computer,
using the R(D)COM server.
Thank you all in advance,
Irina Ursachi.
__
R-help@r-project.org
Hello,
I am trying to fit a exponential power distribution
y = b/(2*pi*a^2*gamma(2/b))*exp(-(x/a)^b)
to a bunch of data for x and y I have in a table.
data
x y
1 2527
2 7559
3125 219
...
25912925 1
26012975
Henrique's solution seems sensible. Another might be:
df = data.frame(x = sample(7:9, 10, rep = T), y = sample(1:5, 10,
rep = T))
table(df)
y
x 1 2 3 4 5
7 1 0 1 0 2
8 0 1 0 0 1
9 0 1 1 2 0
rowSums(table(df) 0)
7 8 9
3 2 3
#-same as Henrique's
count -
Dear users,
i just installed the lastest version of R, 2.8.1 on my computer (OS Windows
XP). Then i tried to update the packages copied from my old R version by
update.packages(ask=F)
However i get the following warning:
Warning: unable to access index for repository
On Fri, Jan 16, 2009 at 11:06 AM, Vincent Goulet
vincent.gou...@act.ulaval.ca wrote:
Paul,
The file did not make it to the list.
Did you try loading Sweave with the 'noae' option, that is:
\usepackage[noae]{Sweave}
This *may* solve your issue.
HTH Vincent
Wow. That does fix it.
Dear Henning,
Try other repositories.
Best wishes,
miltinho
brazil
On Fri, Jan 16, 2009 at 2:08 PM, Henning Wildhagen hwildha...@gmx.dewrote:
Dear users,
i just installed the lastest version of R, 2.8.1 on my computer (OS Windows
XP). Then i tried to update the packages copied from my old
Looking at the display I see this line:
\texttt{Typewriter Font has ``double quotes''}
... displayed with leading backquotes but trailing singlequotes.
Was that intended?
--
David Winsemius
On Jan 16, 2009, at 12:21 PM, Paul Johnson wrote:
On Fri, Jan 16, 2009 at 10:43 AM, David Winsemius
I know optim should do a minimisation, therefor I used as the
optimisation function
opt.power - function(val, x, y) {
a - val[1];
b - val[2];
sum(y - b/(2*pi*a^2*gamma(2/b))*exp(-(x/a)^b));
}
I call: (with xm and ym the data from the table)
a1 - c(0.2, 100)
opt - optim(a1, opt.power,
Dear All,
I could not locate an implementation of the Weighted Kaplan-Meier
Statistics proposed by Pepe and Fleming, Biometrics. 1989
Jun;45(2):497-507 (http://www.ncbi.nlm.nih.gov/pubmed/2765634) in R.
I am wondering if anyone is aware of a R implementation of the test
statistics proposed in
The issue is the usage of extractPrediction.
expred - extractPrediction(rftrain)
should really be
expred - extractPrediction(list(rftrain))
Since this function is intended to get predictions across multiple
models, the man file has a description of the first argument to teh
funtion being
Simon Pickett wrote:
Hi all,
I want to calculate the number of unique observations of y in each
level of x from my data frame df.
this does the job but it is very slow for this big data frame (159503
rows, 11 columns).
group.list - split(df$y,df$x)
count - function(x)
Henning Wildhagen wrote:
Dear users,
i just installed the lastest version of R, 2.8.1 on my computer (OS Windows
XP). Then i tried to update the packages copied from my old R version by
update.packages(ask=F)
However i get the following warning:
Warning: unable to access index for
Tim F Liao wrote:
I've been trying to install some R packages such as mclust and flexmix on linux
but have had the following error messages.
I've been trying to install mclust on my notebook which has linpus linux lite
os and I have installed R as well as some packages all right. However,
Hello everyone,
I have the following issue: one function generates a very big array (can be
more than 1 Gb) and returns a few variables, including this big one. Memory
allocation is OK while the function is running, but the final steps make
some copies that can be problematic. I looked for a way
Hello,
I am fitting a gmler using poisson, and I was looking for a documentation to
interpret correctly the output. I'm quite a beginner with these kind of
models.
I couldn't find something in the lme4 package manual. and on the internet
neither...
Thank you,
Raphaelle
--
View this message in
Hi,
I know I've already asked this question, but I am really getting trouble
getting a PHP document execute an R function on windows.
I would appreciate if someone could give me a simple example code where a
php calls an R function and passes to it arguments, specifying also how to
set up the
Regarding Perl, the batchfiles distribution batch files do not use Perl but
R's own Rcmd.exe does. Based on comments recently I understand that Perl will
be eliminated from the R batch scripts soon but in the meantime if you install
Rtools (which is a set of tools that includes perl and is simple
On 1/16/2009 12:46 PM, Gabriel Margarido wrote:
Hello everyone,
I have the following issue: one function generates a very big array (can be
more than 1 Gb) and returns a few variables, including this big one. Memory
allocation is OK while the function is running, but the final steps make
some
when i try to validate my logistic regression model:
fit-glm(y~x,binomial,data=dataname,x=TRUE,y=TRUE)
validate(fit,method=boot,B=150,...)
i get the following error message:
Error in UseMethod(validate) : no applicable method for validate
any insight would be appreciated. many thanks!
--
Thanks. Very elegant, but doesn't solve the problem of the outer for loop,
since I now would rewrite the code like so:
fragments - list()
for(iN in seq(length(sequences))){
cat(paste(iN,\n))
fragments[[iN]] -
lapply(indexes[[1]], function(g)sequences[[1]][do.call(seq, as.list(g))])
}
I've recently encountered an issue when trying to use the predict.glm
function.
I've gotten into the habit of using the dataframe$variablename method of
specifying terms in my model statements. I thought this unambiguous
notation would be acceptable in all situations but it seems models
on 01/16/2009 02:19 PM A Van Dyke wrote:
when i try to validate my logistic regression model:
fit-glm(y~x,binomial,data=dataname,x=TRUE,y=TRUE)
validate(fit,method=boot,B=150,...)
i get the following error message:
Error in UseMethod(validate) : no applicable method for validate
any
I am new to R and am trying to run data through using the Kendall package.
My first question is that I have NA values for certain criterias, will that
be a problem or will they be ignored?
ie:FallSpring Summer
1988 NA 1.321 1.564
1999 1.333 1.452NA
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On Jan 16, 2009, at 9:43 AM, Guillaume Chapron wrote:
Hello,
This code builds a simple example of 2 wireframes :
require(lattice)
x - c(1:10)
y - c(1:10)
g - expand.grid(x = 1:10, y = 1:10, gr = 1:2)
g$z - c(as.vector(outer(x,y,*)), rep(50,100))
wireframe(z ~ x * y, data = g, groups = gr,
Hi All,
I want to take a matrix (or data frame) and winsorize each variable.
So I can, for example, correlate the winsorized variables.
The code below will winsorize a single vector, but when applied to
several vectors, each ends up sorted independently in ascending order
so that a given
1. RSiteSearch('{periodic spline}') produced 12 hits. I looked
at the first five and found that four of them seemed relevant to your
question.
2. The third hit in this list notes that the DierckxSpline
package has periodic splines, while 'fda' recommends finite Fourier
series
Dear listmembers,
I am trying to obtain values for pointdistance from another dataframe by
matching UTMX and UTMY coordinates, but I am not sure how to introduce the
second coordinate.
PointDF$pointdistance=DistanceDF$distance[match(PointDF$UTMX,DistanceDF$UTMX
Might work better to determine top and bottom for each column with
quantile() using an appropriate quantile option, and then process
each variable in place with your ifelse logic.
I did find a somewhat different definition of winsorization with no
sorting in this code copied from a
Hi,
I'm using the lattice function 'barchart' to make a series of 4
histograms. Currently, the y-axis values are graphed in order of the
y-axis variable. I'd like to have the y-axis values sorted in
ascending order of the x-axis values so that the longest bar
horizontally is on top of the graph
Try this one; it is doing a list of 7000 in under 2 seconds:
sequences - list(
+
+
+ c(M,G,L,W,I,S,F,G,T,P,P,S,Y,T,Y,L,L,I
+ ,M,
+
+
+ N,H,K,L,L,L,I,N,N,N,N,L,T,E,V,H,T,Y,F,
N,I,N,I,N,I,D,K,M,Y,I,H,*)
+ )
indexes - list(
+ list(
+ c(1,22),c(22,46),c(46,
Don't sort y. Calculate xbot and xtop using
xtemp-quantile(y,c(tr,1-tr),na.rm=na.rm)
xbot-xtemp[1]
xtop-xtemp[2]
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
Behalf Of Karl Healey
Sent: Friday, January 16, 2009 2:51 PM
To:
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