I have several variables in a data frame that aren't listed by ls()
after I attach that data frame. Where did they go, and how can I stop
the hidden ones from masking the local ones?
Thanks for any help.
David
[[alternative HTML version deleted]]
On 30 Dec 2013, at 20:01, Axel Urbiz axel.ur...@gmail.com wrote:
Thanks for your kind response Duncan. To be more specific, I'm using the
function mvrnorm from MASS. The issue is that MASS depends on survival and
I have a function in my package named tt() which conflicts with a function
in
A reproducible example would do well here David
Best
Simon
On 31 Dec 2013, at 02:42, David Parkhurst parkh...@indiana.edu wrote:
I have several variables in a data frame that aren't listed by ls()
after I attach that data frame. Where did they go, and how can I stop
the hidden ones from
On 12/30/2013 11:04 PM, Jieyue Li wrote:
Dear All,
I want to have the cumulative incidence curves for 'mstate' data using
Survival package in R. But I got some problems:
I. Problem 1:
1. If I only use intercept without any covariates, I can have 'right'
cumulative incidence curves (2 for 2
G'day David,
On Mon, 30 Dec 2013 20:42:53 -0500
David Parkhurst parkh...@indiana.edu wrote:
Some wild guesses in the absence of a reproducible example.
I have several variables in a data frame that aren't listed by ls()
after I attach that data frame.
ls() list the objects in the global
Alex,
Here's one way to do it, using for() loops.
Jean
library(Hmisc)
# using Swiss Fertility and Socioeconomic Indicators (1888) Data
m - data.matrix(swiss)
output - rcorr(m)
varnames - dimnames(m)[[2]]
nvar - length(varnames)
# for loops through all possible pairs
for(i in 1:(nvar-1)) {
Thanks A.K. and Jeff, both answers helped me.
(and of course gave me more homework!)
On 31/12/13 16:04, Jeff Newmiller wrote:
A.K. answered your question 1, but since you did say as question 2 that you
wanted it done right...
library(reshape2)
ex3 - function() {
d -
Thanks for your kind response Duncan. To be more specific, I'm using the
function mvrnorm from MASS. The issue is that MASS depends on survival and
I have a function in my package named tt() which conflicts with a function
in survival of the same name. I can think of 2 alternatives solutions
Is there some way to format a matrix of fractions as fractions? I think
I've seen this somewhere,
but search on Rseek came up empty.
Example:
outer(1/seq(1:3), 1/seq(1:3))
[,1] [,2] [,3]
[1,] 1.000 0.500 0.333
[2,] 0.500 0.250 0.167
[3,] 0.333
library(MASS)
fractions(outer(1/seq(1:3), 1/seq(1:3)))
# [,1] [,2] [,3]
#[1,] 1 1/2 1/3
#[2,] 1/2 1/4 1/6
#[3,] 1/3 1/6 1/9
A.K.
On Tuesday, December 31, 2013 10:27 AM, Michael Friendly frien...@yorku.ca
wrote:
Is there some way to format a matrix of fractions as fractions? I
I find that google is usually a better search engine for R topics
Google on R fractions.
(I got, e.g.
http://stackoverflow.com/questions/5046026/print-number-as-reduced-fraction-in-r
)
-- Cheers,
Bert Gunter
Genentech Nonclinical Biostatistics
(650) 467-7374
Data is not information.
Gents:
I would add that:
1) attach() should probably no longer be used in R, for all the
reasons (and more) cited,
2) The preferred alternative these days is to use lists, including
data frames, as containers and make liberal use of the ?with and
?within functions. Environments can also be
Two or three respondents asked for an example of my problem. Here's
what's happening to me now. I can't reproduce how I got to this point,
though:
ls()
[1] All8 All8Sites A B C i n D F
X
Error: object 'X' not found
attach(All8Sites)
ls()
[1] All8 All8Sites A B C i n D
This web page includes this information about turning off HTML in messages:
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send /only plain text/, i.e., *no HTML*. 'html-ified' messages are
On 13-12-31 9:48 AM, David Parkhurst wrote:
Two or three respondents asked for an example of my problem. Here's
what's happening to me now. I can't reproduce how I got to this point,
though:
ls()
[1] All8 All8Sites A B C i n D F
X
Error: object 'X' not found
The responses to this seem to be assuming that you want users to have
access to your tt() function, that is, you export it. Just in case the
really simple case has been overlooked: if you are only using this
function internally in your package there should be no problem. Your
package's
Hi Rusers,
I am having a hard time understanding/finding a solution to this error
message of RWeka.
I just want to use Xmeans clustering command but when I typed XMeans then
I get the following message:
Error value[[3L]](cond) :
Required Weka package 'XMeans' is not installed.
So I tried to
Thanks for the report, if this is not a temporary problem, we will
provide an alternative link.
Some search engine suggests that it is mirrored here:
http://linuxgazette.net/no-mime
Best,
Uwe Ligges
On 31.12.2013 16:11, David Parkhurst wrote:
This web page includes this information about
On 13-12-31 11:38 AM, David Parkhurst wrote:
Thank you. I've tried what you're suggesting, at an earlier suggestion
from another respondent, and I don't find my variable in any of lists
ls() through ls(7).
Are you sure that X is really the name of a column in the dataframe?
names(All8Sites)
Dear all,
I have a print command to export some intermediate results from a
user-defined function. It takes a while to run the function and I found I
have to press a key to see the printed results on the screen. How can I ask
the function to continuously print results on the screen without
On 13-12-31 2:02 PM, Jun Shen wrote:
Dear all,
I have a print command to export some intermediate results from a
user-defined function. It takes a while to run the function and I found I
have to press a key to see the printed results on the screen. How can I ask
the function to continuously
Hi again,
Happy new year 2014 to every R gurus and users.
I am struggling with some calculation with dates... Let say I have
following vector of months:
Months - c(Jan, Dec, Mar)
Now I need to assign year with them. This assignment will be based on some
given date. Let say my given date is :
On 31.12.2013 20:10, Duncan Murdoch wrote:
On 13-12-31 2:02 PM, Jun Shen wrote:
Dear all,
I have a print command to export some intermediate results from a
user-defined function. It takes a while to run the function and I found I
have to press a key to see the printed results on the screen.
Question 1: How to get just 2 cumulative incidence curves when there are
multiple covariates.
I don't understand what you want. Assume that we have liver transplant and death
while waiting for a transplant as my two events. There are overall curves (2), or one
can create curves separately
Use, format() to extract a character string representation of the
year, then paste() it together with Months. Like this:
paste(Months, format(Given_Date, format = %Y), sep = -)
See ?strftime for details.
Best,
Ista
On Tue, Dec 31, 2013 at 4:53 PM, Christofer Bogaso
bogaso.christo...@gmail.com
On 01/01/2014 08:53 AM, Christofer Bogaso wrote:
Hi again,
Happy new year 2014 to every R gurus and users.
I am struggling with some calculation with dates... Let say I have
following vector of months:
Months- c(Jan, Dec, Mar)
Now I need to assign year with them. This assignment will be
Hi,
May be this helps:
fun1 - function(months, Given_date){
g1 - format(Given_date, %b)
indx1 - match(months,month.abb)
indx2 - match(g1, month.abb)
yr - as.numeric(format(Given_date,%Y))
if(any(indx1 indx2)){
ifelse(indx1 indx2, paste(months, yr,sep=-), paste(months, yr+1,sep=-))
}
else{
Hi,
Sorry, a correction:
fun1 - function(months, Given_date){
g1 - format(Given_date, %b)
indx1 - match(months,month.abb)
indx2 - match(g1, month.abb)
yr - as.numeric(format(Given_date,%Y))
if(any(indx1 indx2)){
ifelse(indx1 indx2, paste(months, yr+1,sep=-), paste(months, yr,sep=-))
}
On 12/31/2013 09:05 PM, Jieyue Li wrote:
Thanks a lot for the reply!
On Tue, Dec 31, 2013 at 1:59 AM, Göran Broström goran.brost...@umu.se
mailto:goran.brost...@umu.se wrote:
On 12/30/2013 11:04 PM, Jieyue Li wrote:
Dear All,
I want to have the cumulative incidence
Thanks for the answers from Duncan, Bill, Gabor, and Henrik. You
convinced me that
1. The solution
if (x 1){
for (x in 2:x){
...
is the easiest, most effective, and most easy-to-understand.
2. However, Bill (and Henrik) raised the question of replacing '1' with
'1L'; I
Thank you. I've tried what you're suggesting, at an earlier suggestion
from another respondent, and I don't find my variable in any of lists
ls() through ls(7).
I'm just going back to using R after being away from statistics for
several years. I'm thinking I might uninstall R, then reinstall
Thanks a lot for the reply!
On Tue, Dec 31, 2013 at 1:59 AM, Göran Broström goran.brost...@umu.sewrote:
On 12/30/2013 11:04 PM, Jieyue Li wrote:
Dear All,
I want to have the cumulative incidence curves for 'mstate' data using
Survival package in R. But I got some problems:
I. Problem 1:
I've just uninstalled and then reinstalled R on my windows 7 machine.
To test my understanding of data frames, I'm trying the following code.
(I plan to do other things with it, if it would only work.)
Here's the code, which seems pretty basic to me:
ls()
nums ← c(1,2,3,4,5)
ltrs ←
On Tue, Dec 31, 2013 at 6:53 PM, David Parkhurst parkh...@imap.iu.edu wrote:
I've just uninstalled and then reinstalled R on my windows 7 machine.
To test my understanding of data frames, I'm trying the following code.
(I plan to do other things with it, if it would only work.)
Here's the
Hi David,
Your code is showing up here with an arrow symbols. If it's an actual cut
and paste, that's your problem: assignment in R is the two-character - and
not an arrow symbol.
Otherwise your code looks fine.
Sarah
On Tuesday, December 31, 2013, David Parkhurst wrote:
I've just
Fortune?
Where did lost variables go, with example
Sent from my iPhone
On Dec 31, 2013, at 7:36 PM, David Parkhurst parkh...@imap.iu.edu
parkh...@imap.iu.edu wrote:
Thank you. I've tried what you're suggesting, at an earlier suggestion
from another respondent, and I don't find my
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
project.org] On Behalf Of Sarah Goslee
Sent: Tuesday, December 31, 2013 4:55 PM
To: David Parkhurst
Cc: r-help@r-project.org
Subject: Re: [R] Basic misunderstanding, or problem with my
installation?
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