[R] How to get source code of a package

2014-09-05 Thread madhvi.gupta
Hi, Can anyone tell me how to get source code of a package of R? I want to integrate elastic search with R if there is any way please let me know or give me a direction to do that. Thanks. [[alternative HTML version deleted]] __

Re: [R] How to get source code of a package

2014-09-05 Thread Uwe Ligges
On 05.09.2014 09:01, madhvi.gupta wrote: Hi, Can anyone tell me how to get source code of a package of R? An R package is distributed in form of source code: Say you want to see the sources of abc, then go to http://cran.r-project.org/web/packages/abc/index.html and download the osurces or

Re: [R] Built R package with example

2014-09-05 Thread Uwe Ligges
On 04.09.2014 20:02, Karim Mezhoud wrote: Dear All, How can I add folder content examples of needed files to run example? The simple add of folder did not built and reload with the package. If you need additional data, put the data in the package as described in Writing R Extensions. If

Re: [R] mvpart error in R 3.1.1 s_to_rp not available for .C()

2014-09-05 Thread Uwe Ligges
On 04.09.2014 15:03, Angel Marley wrote: Dear R list, I'm working with recursive tress using packages mvpart and rpart in R in linux xubuntu (64). The package performed with no problem under my previous R version (2.14) I had recently updated my R version to 3.1.1 and when I try to run a

Re: [R] Operator proposal: %between%

2014-09-05 Thread Barry Rowlingson
On Fri, Sep 5, 2014 at 12:28 AM, David Winsemius dwinsem...@comcast.net wrote: If you are accepting feature requests The R issue tracker has a wishlist section:

Re: [R] How to get source code of a package

2014-09-05 Thread Barry Rowlingson
On Fri, Sep 5, 2014 at 8:01 AM, madhvi.gupta madhvi.gu...@orkash.com wrote: Hi, Can anyone tell me how to get source code of a package of R? I want to integrate elastic search with R if there is any way please let me know or give me a direction to do that. Which R packages do you want source

Re: [R] How to get source code of a package

2014-09-05 Thread Jeff Newmiller
Read the Writing R Extensions document that comes with R? Use that knowledge to write a package? Read the Advanced R website (http://adv-r.had.co.nz)? Use a web search engine to look for others working on a similar package? Read the Posting Guide mentioned at the bottom of this or any other

Re: [R] Operator proposal: %between%

2014-09-05 Thread Torbjørn Lindahl
Please add it if you think it fits, and expand it as discussed, I am not creating a package for one single utility function. T. On Fri, Sep 5, 2014 at 1:28 AM, David Winsemius dwinsem...@comcast.net wrote: On Sep 4, 2014, at 12:54 PM, Greg Snow wrote: The TeachingDemos package has %% and

[R] Obtain coefficients of several nlme objects

2014-09-05 Thread Kuma Raj
I have several lme objects like the ones shown below and I wish to combine the coefficients and confidence intervals of fixed effects of several models. Is there a function that could do that job? m1 - lme(mark1 ~ pm10 + temp + + age + gender + bmi + statin + smoke + dow + season

Re: [R] Operator proposal: %between%

2014-09-05 Thread Gabor Grothendieck
On Thu, Sep 4, 2014 at 10:41 AM, Torbjørn Lindahl torbjorn.lind...@gmail.com wrote: Not sure if this is the proper list to propose changes like this, if it passes constructive criticism, it would like to have a %between% operator in the R language. There is a between function in the

Re: [R] Operator proposal: %between%

2014-09-05 Thread Torbjørn Lindahl
I don't mind maintaining this, however I'm not creating a new util package just for one function, there are already several nice util libraries out there, adding one more adds to fragmentation more than this single function provides usefulness. If anyone wants to adopt this low-maintenance-cost

Re: [R] Operator proposal: %between%

2014-09-05 Thread Duncan Murdoch
On 05/09/2014, 6:47 AM, Torbjørn Lindahl wrote: I don't mind maintaining this, however I'm not creating a new util package just for one function, there are already several nice util libraries out there, adding one more adds to fragmentation more than this single function provides usefulness.

Re: [R] Operator proposal: %between%

2014-09-05 Thread Hadley Wickham
Please add it if you think it fits, and expand it as discussed, I am not creating a package for one single utility function. Why not? There's nothing wrong with a package that only provides one function. Hadley -- http://had.co.nz/ __

Re: [R] mvpart error in R 3.1.1 s_to_rp not available for .C()

2014-09-05 Thread Angel Marley
Dear Uwe, thanks for your prompt reply. I have run the update.packages, but the error persisted, then I did it again and it works Best regards and thank for your time Angel On Friday, September 5, 2014 4:15 AM, Uwe Ligges lig...@statistik.tu-dortmund.de wrote: On 04.09.2014

[R] sequential input script dataframe process functionality

2014-09-05 Thread rl
Subscribers, Could someone please indicate correct terminology and relevant manual sections to achieve the following conceptual workflow, to create a script to select sequentially parts of a dataframe: Welcome to this R script program Select level number below of variable 'X' [1] [2] [3]

Re: [R] Operator proposal: %between%

2014-09-05 Thread William Dunlap
You can easily run into precedence problems with the %fun% syntax. E.g., if 1 %% 5 %% 10 returns TRUE then 1 %% 5 %% 10*2 will return 2 because %% has higher precedence than *. as.list(quote(1 %% 5 %% 10*2)) [[1]] `*` [[2]] 1 %% 5 %% 10 [[3]] [1] 2

Re: [R] calculate Euclidean distances between populations in R with this data structure

2014-09-05 Thread David L Carlson
There may be a specialized package for this in bioconductor, but it seems that you could just use aggregate() to calculate the means for each population and then use the results of that in dist(). ?aggregate - David L Carlson Department of Anthropology Texas

Re: [R] Turn Rank Ordering Into Numerical Scores By Transposing A Data Frame

2014-09-05 Thread Simon Kiss
HI, of course. The a mini-version of my data-set is below, stored in d2. Then the code I'm working follows. library(reshape2) #Create d2 structure(list(row = 1:50, rank1 = structure(c(3L, 3L, 3L, 4L, 3L, 3L, NA, NA, 3L, NA, 3L, 3L, 1L, NA, 2L, NA, 3L, NA, 2L, 1L, 1L, 3L, NA, 6L, NA, 1L, NA,

Re: [R] Turn Rank Ordering Into Numerical Scores By Transposing A Data Frame

2014-09-05 Thread David L Carlson
The big difference between the data sets is that many of your rows (16) have all missing values. None of mine do. If you run my data and yours, you will see that decast throws a warning Aggregation function missing: defaulting to length with your data but not with mine. As a result, instead of

Re: [R] Problems bootstrapping multigroup SEM

2014-09-05 Thread Chad Danyluck
Thanks again John. I think the problem is now resolved. I changed the information that I passed through the sem() as follows: MAP.mg.sem - sem(MAP.mg.mod, data=list(stereotype=stereotype.MAP.data, evaluative=evaluative.MAP.data), group=IAT.factor) Then, from ?bootSem The default is the data

[R] parameterization question

2014-09-05 Thread Dale Garman
How can I parameterize the function call to aggregate() below with colx (a character string) in the following code? That is, replace both if statements with aaa - aggregate(colx_something, data=tidy[grpyrs,],sum). I've tried a couple of ideas for colx_something but get an R-error each time.

[R] 'mv: preserving permissions for `all.R': Operation not supported' when installing R 3.1.0 via compiling source code in CentOS

2014-09-05 Thread 孑潜
I compile R3.1.0 to install it in centOS without root. The disk partition format is NFS (network file system). After configure it ($/home/XX/download/R3.1.0/configure --prefix=/home/zj/local/R --enable-R-shlib --with-x‍) successfully, I make it ($make). But there always is an error when make

Re: [R] depth of labels of axis

2014-09-05 Thread Jinsong Zhao
On 2014/9/4 12:24, David Winsemius wrote: On Sep 3, 2014, at 10:05 PM, Jinsong Zhao wrote: On 2014/9/3 21:33, Jinsong Zhao wrote: On 2014/9/2 11:50, David L Carlson wrote: The bottom of the expression is set by the lowest character (which can even change for subscripted letters with

Re: [R] depth of labels of axis

2014-09-05 Thread Jinsong Zhao
On 2014/9/4 14:58, David L Carlson wrote: The problem with this approach is that the horizontal positioning of the labels is based on the width of the label including the phantom part so that the E's are pushed to the left of the tick mark (at least on my Windows machine). But it does provide

Re: [R] parameterization question

2014-09-05 Thread William Dunlap
You could try using the non-formula interface to aggregate. Note that the following two calls to aggregate are equivalent but the second (using the non-formula interface) makes the response column a variable: df - data.frame(Y1=1:10, Y2=101:110, Group=rep(letters[1:3], c(3,3,4)))

Re: [R] depth of labels of axis

2014-09-05 Thread David Winsemius
On Sep 5, 2014, at 4:15 PM, Jinsong Zhao wrote: On 2014/9/4 14:58, David L Carlson wrote: The problem with this approach is that the horizontal positioning of the labels is based on the width of the label including the phantom part so that the E's are pushed to the left of the tick mark

Re: [R] depth of labels of axis

2014-09-05 Thread David Winsemius
On Sep 5, 2014, at 4:53 PM, David Winsemius wrote: On Sep 5, 2014, at 4:15 PM, Jinsong Zhao wrote: On 2014/9/4 14:58, David L Carlson wrote: The problem with this approach is that the horizontal positioning of the labels is based on the width of the label including the phantom part so

[R] Testing general hypotheses on regression coefficients

2014-09-05 Thread Chris
Hi. Say I have a model like y = a + B1*x1 + B2*x2 + B3*x3 + B4*x4 + e and I want to test H0: B2/B1 = 0 or H0: B2/B1=B4/B3 (whatever H1). How can I proceed? I now about car::linearHypothesis, but I can't figure out a way to do the tests above. Any hint? Thanks. C

Re: [R] Testing general hypotheses on regression coefficients

2014-09-05 Thread Søren Højsgaard
AFAICS you are not testing a linear hypothesis (which is of the form Lb=b0 where L is a matrix and b=(a,B1,B2,B3,B3) is the parameter vector). If, for simplicity, your model is E(y) = a + bx then -a/b is the x-value for which y is zero. When you turn to estimates then u = -a/b is the ratio of

Re: [R] Testing general hypotheses on regression coefficients

2014-09-05 Thread Bert Gunter
Well: 1) 8th grade algebra tells me B2/B1 == 0 == B2 =0; 2) I suspect you would need to provide more context for the other, as you may be going about this entirely incorrectly (have you consulted a local statistician?): your nonlinear hypothesis probably can be made linear under the right