but the point is that where should I start from now
On Tue, Aug 24, 2021 at 7:43 AM Andrew Simmons wrote:
> Hello,
>
>
> I see what you're saying that the .tar archive contains many more
> compressed files, but that's not necessarily a problem. R can read directly
> from a compressed file
Hello,
I see what you're saying that the .tar archive contains many more
compressed files, but that's not necessarily a problem. R can read directly
from a compressed file without having to decompress it beforehand. I
modified my code to look a little more like yours:
# need to do
Hi Kai,
How about setting:
germlinepatients$DisclosureStatus <- NA
then having your three conditional statements as indices:
germlinepatients$DisclosureStatus[germlinepatients$gl_resultsdisclosed
== 1] <-"DISCLOSED"
germlinepatients$DisclosureStatus[germlinepatients$
gl_resultsdisclosed == 0]
sir after that I want to run:
#get the list of sample names
GSMnames <- t(list.files("~/Desktop/GSE162562_RAW", full.names = F))
#remove .txt from file/sample names
GSMnames <- gsub(pattern = ".txt", replacement = "", GSMnames)
#make a vector of the list of files to aggregate
files <-
Thanks,
long weekend coming up :-)-O
el
On 2021-08-23 18:06 , Bert Gunter wrote:
... and to add to Ivan's suggestions, **depending on what you are
trying to show with your grid of graphs,** you may wish to consider
using ggplot's "facet" capabilities to assure that any quantitative
variables
Hello List,
I wrote the script below to assign value to a new field DisclosureStatus.
my goal is if gl_resultsdisclosed=1 then DisclosureStatus=DISCLOSED
else if gl_resultsdisclosed=0 then DisclosureStatus= ATTEMPTED
else if gl_resultsdisclosed is missing and gl_discloseattempt1 is not missing
There are some differences in R, between Windows and Linux.
You could try the 'shell' command instead.
#On Windows
?shell
On Tue, Aug 24, 2021 at 4:53 AM Anas Jamshed wrote:
>
> I have the file GSE162562_RAW. First I untar them
> by untar("GSE162562_RAW.tar")
> then I am running like:
>
Hello,
I tried downloading that file using 'utils::download.file' (which worked),
but then continued to complain about "damaged archive" when trying to use
'utils::untar'. However, it seemed to work when I downloaded the archive
manually. Finally, the solution I found is that you have to specify
I am trying this URL: "
https://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162562/suppl/GSE162562_RAW.tar
"
but it is not giving me any file
On Mon, Aug 23, 2021 at 11:42 PM Andrew Simmons wrote:
> Hello,
>
>
> I don't think you need to use a system command directly, I think
> 'utils::untar'
Hello,
I don't think you need to use a system command directly, I think
'utils::untar' is all you need. I tried the same thing myself, something
like:
URL <- "https://exiftool.org/Image-ExifTool-12.30.tar.gz;
FILE <- file.path(tempdir(), basename(URL))
utils::download.file(URL, FILE)
Hi,
I apologize for the confusion. I will try to be clearer in my explanation.
I believe that with the R script it becomes clearer.
I have 4 variables with 10 repetitions and each one receives a value,
randomly.
I order the dataset from largest to smallest value. I have to select 10
elements in
I have the file GSE162562_RAW. First I untar them
by untar("GSE162562_RAW.tar")
then I am running like:
system("gunzip ~/Desktop/GSE162562_RAW/*.gz")
This is running fine in Linux but not in windows. What changes I
should make to run this command in windows as well
[[alternative HTML
... and to add to Ivan's suggestions, **depending on what you are
trying to show with your grid of graphs,** you may wish to consider
using ggplot's "facet" capabilities to assure that any quantitative
variables that you are encoding in the maps (e.g. by color, density
shading, etc.) are depicted
Thank you,
more to study :-)-O
el
On 23/08/2021 10:20, Ivan Krylov wrote:
On Mon, 23 Aug 2021 08:37:54 +0200
Dr Eberhard Lisse wrote:
create the variables dynamically and add them to to
the grid (dynamically, ie adding more countries)
In my opinion, creating variables in the global
On Mon, 23 Aug 2021 08:37:54 +0200
Dr Eberhard Lisse wrote:
> create the variables dynamically and add them to to
> the grid (dynamically, ie adding more countries)
In my opinion, creating variables in the global environment
programmatically may lead to code that is hard to understand and debug
Hi
Only I got your HTML formated mail, rest of the world got complete mess. Do not
use HTML formating.
As I got it right I wonder why in your second example you did not follow
3A - 3B - 2C - 2D
as D were positioned 1st and 4th.
I hope that you could use something like
sss <-
"replacer v.1.0.0"
new package submission
"replacer" is a value replacement utility currently based on the powerful
package "data.table", available on CRAN.
This utility is purposed for outside-database update of datasets. It is
accessible to beginners to `R` and facilitates complex dataset
Hi,
I have a function PICTURE() and do something like
COUNTRY = 'Namibia'
NAKURVE = PICTURE(COUNTRY)
NAKURVE
ggsave(paste0(tolower(COUNTRY),".png"), width = 16, height = 9)
COUNTRY = ('Germany')
DEKURVE = PICTURE(COUNTRY)
DEKURVE
Hi!
Thank you very much for the fascinating solutions. Nice to learn
different approaches. All solutions seem to work with text data as
well.
@Gabor (who suggested the 'igraph' package): yes, I am familiar with
'igraph' and the solution suggested by you works fine, too. Since I
need this kind of
19 matches
Mail list logo
