Re: [R] Which dependency list to build first?

2019-03-01 Thread John via R-help
On Tue, 26 Feb 2019 05:47:38 -0800 (PST) Rich Shepard wrote: > /usr/lib/R/library/later/libs/later.so: undefined symbol: > __atomic_fetch_add_8 Stackoverflow may help at least in locating the trouble. A web search indicates the error is not unknown in other contexts than R. JWDougherty

Re: [R] Help with use RMarkdown and knitr in an rdm output to word.doc

2019-04-08 Thread John via R-help
On Mon, 8 Apr 2019 11:19:12 + Bill Poling wrote: One solution to your problem may be to use an environment like RStudio. You can maintain multiple open documents including an rmd document and using knitr and rmarkdown, add and then run code snippets the output of which becomes embedded in

Re: [R] Mac/PC differences in lmer results

2019-06-05 Thread John via R-help
On Wed, 29 May 2019 18:44:26 +0200 Nicolas Schuck wrote: > Dear fellow R coders, > > I am observing differences in results obtained using glmer when using > a Mac or Linux computer versus a PC Just as an aside and point of information, both the Mac and the Linux systems are PCs, just as

Re: [R] Open a file which name contains a tilde

2019-06-12 Thread John via R-help
On Wed, 5 Jun 2019 18:07:15 +0200 Frank Schwidom wrote: In reading file names, names with spaces require escaping of the spaces, and you are using not only a tilde but the space as spell. The tilde is conventionally read as wild card representing the leading portion of the file address, which

Re: [R] install R

2019-05-08 Thread John via R-help
On Wed, 8 May 2019 21:05:29 +0800 (CST) yueli wrote: > Hello, > > > I am trying to install R. > > > Thanks in advance for any help! > > > Yue > > It appears that your GCC compiler installation doesn't include all the compilers that can come with it. All those "no's" listed in your

Re: [R] Sample size required to estimate population variance

2019-07-04 Thread John via R-help
On Tue, 2 Jul 2019 22:23:18 + (UTC) Thomas Subia via R-help wrote: > Colleagues, > Can anyone suggest a package or code which might help me calculate > the minimum sample size required to estimate the population variance? > I can do this in Minitab but I'd rather do this in R. Thomas Subia

[R] CRAN UC Berkeley link

2020-01-25 Thread John via R-help
This link https://cran.cnr.berkeley.edu/ on the "mirrors" page no longer points to a CRAN mirror. It seems to be generic to UCB. JWDougherty __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see

Re: [R] the volcano orientation

2020-05-11 Thread John via R-help
Out of curiosity, and considering the bewildering array of projections and grids in use for various mapping purposes, you seem to be saying in your example 2 that the grid coordinates number south to north and east to west. Given scale of the coordinate numbers, would that be a national grid

Re: [R] Analyzing Baseball Data With R

2020-03-17 Thread John via R-help
On Mon, 16 Mar 2020 15:35:36 -0700 "Phillip Heinrich" wrote: > Can’t get past first step of Chapter 7 page 164. > > Opened a new RStudio window. Loaded tidyverse and keyed in > library(tidyverse) which of course includes dplyr. The working > directory is: C:/Users/Owner/Documents. > > Then

Re: [R] Why does a 2 GB RData file exceed my 16GB memory limit when reading it in?

2020-09-02 Thread John via R-help
On Wed, 2 Sep 2020 13:36:43 +0200 Uwe Ligges wrote: > On 02.09.2020 04:44, David Jones wrote: > > I ran a number of analyses in R and saved the workspace, which > > resulted in a 2GB .RData file. When I try to read the file back > > into R > > Compressed in RData but uncompressed in main

Re: [R] Why does a 2 GB RData file exceed my 16GB memory limit when reading it in?

2020-09-02 Thread John via R-help
On Wed, 2 Sep 2020 16:31:53 -0500 David Jones wrote: > Thank you Uwe, John, and Bert - this is very helpful context. > > If it helps inform the discussion, to address John and Bert's > questions - I actually had less memory free when I originally ran the > analyses and saved the workspace, than

[R] Package installation problem

2020-05-28 Thread John via R-help
I'm not certain just what this problem is. Trying to install the "curl" package, which "tseries" wants results in the following error: Package libcurl was not found in the pkg-config search path. Perhaps you should add the directory containing `libcurl.pc' to the PKG_CONFIG_PATH environment

Re: [R] Package installation problem

2020-05-29 Thread John via R-help
On Fri, 29 May 2020 18:36:39 +0200 Martin Møller Skarbiniks Pedersen wrote: > sudo dnf install libcurl-devel Martin, I was going to say I had already done that more than once, using both the command line and the new "dnfdragora" package manager, but then decided, "what the heck. I'll try

Re: [R] Package installation problem

2020-06-03 Thread John via R-help
On Fri, 29 May 2020 08:47:35 +0300 Eric Berger wrote: > Hi John, > This is a bit off-topic for this mailing list as your issue is a > linux, specifically Fedora, issue, and not R. > I don't use Fedora but I did a quick Google search on > > fedora missing package .pc file > > and that came

Re: [R] How to stack two Stack manhattan plots?

2020-06-10 Thread John via R-help
On Wed, 10 Jun 2020 15:36:11 -0500 Ana Marija wrote: > Hello, > > I have a data frame like this: > > > head(tmp1) > CHR BP PoldPnew > 1 1 785989 0.9521 0.09278 > 2 1 1130727 0.4750 0.19010 > 3 1 1156131 0.5289 0.48520 > 4 1 1158631 0.2554 0.18140 > 5 1 1211292 0.2954

Re: [R] grid and lattice packages not working

2020-07-27 Thread John via R-help
On Mon, 27 Jul 2020 10:12:33 -0700 Abhai Sawkar wrote: It might help if you provided an example of what happens when you invoke one of the routines. As it stands, this could be due to several different causes. JWdougherty > Hi R support team, > > I downloaded R from the Internet and tried to

Re: [R] Inappropriate color name

2020-11-20 Thread John via R-help
On Sun, 15 Nov 2020 17:35:41 -0900 Lainey Gallenberg wrote: Lainey, Assumptions are always fraught. Your assumption about the "meaning" of Indian Red is simply wrong. Indian red is named for a lateritic soil in India. It isn't racist, and I have American Indian friends who have expressed

Re: [R] Inappropriate color name

2020-11-20 Thread John via R-help
On Thu, 19 Nov 2020 23:27:29 +0100 Heinz Tuechler wrote: > One may remember that people who might feel offended by "Indian Red" > (Native Americans) make up less than 0.5 percent of all "Indians". > It is hardly the fault of the people of India that Native Americans > were called Indians by an

Re: [R] How to understand the mentality behind tidyverse and ggplot2?

2020-11-18 Thread John via R-help
On Tue, 17 Nov 2020 12:43:21 -0500 C W wrote: > Dear R list, > > I am an old-school R user. I use apply(), with(), and which() in base > package instead of filter(), select(), separate() in Tidyverse. The > idea of pipeline (i.e. %>%) my code was foreign to me for a while. It > makes the code

Re: [R] FREDR and R 3.6

2020-10-29 Thread John via R-help
On Thu, 29 Oct 2020 13:29:41 -0400 H wrote: > I tried to install the fredr package yesterday to access the data > series hosted by the St. Louis Fed but my installation of R, version > 3.6, tells me it is not available from a cran repository. > > I could not find any information on this on the

Re: [R] Use of geometric mean .. in good data analysis

2024-01-23 Thread John via R-help
I've advised people consulting me that if their data is loaded with zeros, while they are absolutely certain that something should be where the zeros are, then they either need a better measuring tool, or to carefully document the results of limits on detectability and then note what fraction