Re: [R] Literature analysis

2009-12-15 Thread Schwan
OK this does work: I can subtract eg the titles. But how can I say R that it should make a link between title, keyword and frequency of the keywords in order to have a 3 d plot? Thanks a lot for helping me until here anyway! Cheers On Mon, 2009-12-14 at 16:15 +0100, Romain Francois wrote:

Re: [R] Literature analysis

2009-12-14 Thread Schwan
Dear Liviu, I have tried the Rcmdr GUI but when i load the data, there is no active data set(this is the error message i got). Can someone help me further to realize my project? Thanks On Fri, 2009-12-11 at 19:05 +, Liviu Andronic wrote: Hello On 12/11/09, Schwan

Re: [R] Literature analysis

2009-12-14 Thread Liviu Andronic
Hello On 12/14/09, Schwan s.s.hosse...@utwente.nl wrote: I have tried the Rcmdr GUI but when i load the data, there is no active data set(this is the error message i got). Can you post the exact error message? Also, could you post a sample data file (for example, on tinyupload.com) so that

Re: [R] Literature analysis

2009-12-14 Thread Schwan
I have uploaded the csv file here: http://s000.tinyupload.com/?file_id=79349565739733953435 It contains the citations, which I generated from the bibtex file. The exact error message is: [2] ERROR: more columns than column names A screenshot of the Rcmd is located here:

Re: [R] Literature analysis

2009-12-14 Thread Erich Neuwirth
The screenshot shows your error. Just have a look at the error message in the bottom part of the window. Your csv file has more columns than column names. On Dec 14, 2009, at 2:42 PM, Schwan wrote: I have uploaded the csv file here: http://s000.tinyupload.com/?file_id=79349565739733953435

Re: [R] Literature analysis

2009-12-14 Thread Liviu Andronic
On 12/14/09, Schwan s.s.hosse...@utwente.nl wrote: [2] ERROR: more columns than column names I looked at the data and there is a column name called ISBN#. Try to remove # and then import the data. Liviu __ R-help@r-project.org mailing list

Re: [R] Literature analysis

2009-12-14 Thread Romain Francois
Hello, Sorry to arrive late on this. Did you try the recently uploaded bibtex package. It reads a bibtex file into an R list (of class citationList). So for example : if your posted example lives in biblio.bib for example, you can read it like this : bib - read.bib( biblio.bib ) sapply(

Re: [R] Literature analysis

2009-12-14 Thread Liviu Andronic
On 12/14/09, Schwan s.s.hosse...@utwente.nl wrote: but unfortunately somehow the package bibtex dont want to install (actually it installs, but if i follow your instruction: bib - read.bib( /home/schwan/Desktop/science.bib ) I got an Error Message which says: Error: could not find

Re: [R] Literature analysis

2009-12-14 Thread Schwan
Thanks, but unfortunately somehow the package bibtex dont want to install (actually it installs, but if i follow your instruction: bib - read.bib( /home/schwan/Desktop/science.bib ) I got an Error Message which says: Error: could not find function read.bib I already installed the package as

[R] Literature analysis

2009-12-11 Thread Schwan
Dear all, i am new in R. I am writing a review paper about batteries. However, i am interested in analyzing all the papers by keywords, author, references and year. This could be done by refviz a software, which is only running on windows machines and which is not free. So my question to you

Re: [R] Literature analysis

2009-12-11 Thread nshephard
Schwan wrote: Dear all, i am new in R. I am writing a review paper about batteries. However, i am interested in analyzing all the papers by keywords, author, references and year. This could be done by refviz a software, which is only running on windows machines and which is not free.

Re: [R] Literature analysis

2009-12-11 Thread Stephan Kolassa
Hi, from what I understand, you may be interested in text mining, so perhaps you want to look at the tm package. Then again, depending on what you are really trying to do, you may be better served with perl, awk and similar tools than with R... HTH, Stephan Schwan schrieb: Dear all, i

Re: [R] Literature analysis

2009-12-11 Thread Schwan
Thanks for all the comments, and sorry about the unstructured question! I am trying to: 1: analyze keywords, names from Authors and year of publication from citations (with abstracts) i downloaded fron various sites(these downloads can be converted into .txt files as well) 2: to cluster these

Re: [R] Literature analysis

2009-12-11 Thread nshephard
Schwan wrote: Thanks for all the comments, and sorry about the unstructured question! I am trying to: 1: analyze keywords, names from Authors and year of publication from citations (with abstracts) i downloaded fron various sites(these downloads can be converted into .txt files as

Re: [R] Literature analysis

2009-12-11 Thread Schwan
Ok good question I havent explain! Well,lets keep it simple for the begining. By analyzing the keywords(which can also include the authors name) I mean, 1) investigate in which paper the keyword occur and how often 2) investigate if keywords occur together X axis can show the paper title (or

Re: [R] Literature analysis

2009-12-11 Thread Ista Zahn
It sounds pretty simple so far. Just put the citation info in a data frame, and plot it. I would use ggplot2 for plotting, but it could be done in base or lattice too. On Fri, Dec 11, 2009 at 8:04 AM, Schwan s.s.hosse...@utwente.nl wrote: Ok good question I havent explain! Well,lets keep it

Re: [R] Literature analysis

2009-12-11 Thread Schwan
Thanks, but how should I put the citation inside a data frame? data.frame(first txt file, second txt file...) plot (what should I insert here) type=p And how should I load the txt files anyway inside the frame? On Fri, 2009-12-11 at 08:37 -0500, Ista Zahn wrote: It sounds pretty

Re: [R] Literature analysis

2009-12-11 Thread Schwan
They are in Bibtex For example: @ARTICLE{adsdifvanadiumcationexchange, author = {Jin-qing Chen and Bao-guo Wang and Ji-chu Yang}, title = {Adsorption and Diffusion of VOsup2+/sup and VOsub2/sub sup+/sup across Cation Membrane for All-Vanadium Redox Flow Battery}, journal = {Solvent

Re: [R] Literature analysis

2009-12-11 Thread Gustaf Rydevik
On Fri, Dec 11, 2009 at 3:04 PM, Schwan s.s.hosse...@utwente.nl wrote: Thanks, but how should I put the citation inside a data frame? data.frame(first txt file, second txt file...) plot (what should I insert here) type=p And how should I load the txt files anyway inside the frame?

Re: [R] Literature analysis

2009-12-11 Thread Neil Shephard
On Fri, Dec 11, 2009 at 2:04 PM, Schwan s.s.hosse...@utwente.nl wrote: Thanks, but how should I put the citation inside a data frame? data.frame(first txt file, second txt file...) plot (what should I insert here) type=p And how should I load the txt files anyway inside the frame?

Re: [R] Literature analysis

2009-12-11 Thread Ista Zahn
I think I my original response was bad. And I also realize that I don't really understand what you want to do. Here is what I was thinking: Format your bibliography as CSV (you can convert common bibliography formats to .csv using Tellico or similar software). Then read the references into a

Re: [R] Literature analysis

2009-12-11 Thread Schwan
OK Thanks again for the help. I have tried example - read.csv(/PATH/test.cvs) If i call for the results R is plotting all the data separated by title, Keyword, author...) However, I dont know how to tell R that it just should look for e.g. author,keywords and year and how to plot these for

Re: [R] Literature analysis

2009-12-11 Thread Liviu Andronic
Hello On 12/11/09, Schwan s.s.hosse...@utwente.nl wrote: However, I dont know how to tell R that it just should look for e.g. author,keywords and year and how to plot these for example on x axis the author and y axis the keywords and on z axis the year? I suggest that you try to get going