On 3/19/07, Jonathan Wang [EMAIL PROTECTED] wrote:
On 3/16/07, Richard M. Heiberger [EMAIL PROTECTED] wrote:
I can't imagine using Windows without Emacs.
In particular, the Windows ports of Emacs are very aware
of the operating system and usually make the right assumptions.
The type of
Greetings!
I have a few colleagues who like the idea of Sweave, but have failed
to become enlightened monks of the One True Editor
(http://www.dina.dk/~abraham/religion/)
Are there any other Microsoft-centric editors or IDEs which have solid
support for writing SWeave documents (dual R / LaTeX
Cleland [EMAIL PROTECTED] wrote:
A.J. Rossini wrote:
Greetings!
I have a few colleagues who like the idea of Sweave, but have failed
to become enlightened monks of the One True Editor
(http://www.dina.dk/~abraham/religion/)
Are there any other Microsoft-centric editors or IDEs which
On 7/5/06, Uwe Ligges [EMAIL PROTECTED] wrote:
A.J. Rossini wrote:
What I'm wondering about is can you have both the LaTeX and R
advantages
that WinEDT provides available at the same time? (does it handle the
modes
in a context-sensitive way within the same document, or do you have
On 7/5/06, Ramon Diaz-Uriarte [EMAIL PROTECTED] wrote:
On Wednesday 05 July 2006 10:14, A.J. Rossini wrote:
Greetings!
I have a few colleagues who like the idea of Sweave, but have failed
to become enlightened monks of the One True Editor
(http://www.dina.dk/~abraham/religion
From: Erin Hodgess [EMAIL PROTECTED]
To: r-help@stat.math.ethz.ch
Date: Mon, 15 May 2006 05:49:11 -0500
Subject: [R] Rorca zip?
Dear R People:
Is there a Windows binary for ROrca, please?
When I did the search on the R site, there were several links
to a zip file, but all of the links
On 3/31/06, eugene dalt [EMAIL PROTECTED] wrote:
In addition, I think people should always explore ways
to repackage exclusive S-Plus facilities and libraries
into R. By rewritting them or using GPL loopholes.
Licenses are important. They state for the author, precisely what the
author
On 3/31/06, A.J. Rossini [EMAIL PROTECTED] wrote:
There are some really nice facilities that R doesn't have, and
probably will never have. But it's still missing key features.
It's late, and somewhere in my 18+ hour day today, I spent a miserable
evening in Heathrow. Yech. I meant
at useR if enough people
show up for the tutorial...
On 3/13/06, Kevin E. Thorpe [EMAIL PROTECTED] wrote:
A.J. Rossini wrote:
SNIP
One nice thing about ESS/Emacs is that it will cean a transcript
buffer. So if you are working in the inferior process buffer (where
you shouldn't
From: Duncan Murdoch [EMAIL PROTECTED]
To: [EMAIL PROTECTED]
Date: Fri, 10 Mar 2006 08:33:09 -0500
Subject: Re: [R] To improve my understanding of workspaces
Other than Emacs, I use the same work habits as Adai. An advantage of
this workflow is that almost everything is stored in text
From: Wensui Liu [EMAIL PROTECTED]
Just curious how xlispstat is used in the industry and what's it strengthen
compared with other computing languages such as R or matlab?
Almost not at all, though there are a few holdouts.
On a related note, I've been doing some interesting things with a
Whoops, sorry John. In the last few months, we took off the XEmacs
packaged ESS since it wasn't keeping up very well with the tarball,
due to complications, mis-matched release schedules/requirements, and
the like.
It now needs to be installed from tarball, though there is some help
for that, I
For those who suggest other ways to do this, I ALREADY HAVE ANOTHER
DESIGN SOLUTION, DESCRIBED AT THE END.
That being said, I want to know if it's possible to reference a slot
in an S4 class from another slot, i.e. I'd like to have the self.*
semantics of Python so that I can reuse a slot. That
From: Duncan Murdoch [EMAIL PROTECTED]
I'd recommend using the RWinEdt package instead for a different way to
integrate winedit with R.
winedit and winedt are two different editors, last I checked.
best,
-tony
[EMAIL PROTECTED]
Muttenz, Switzerland.
Commit early,commit often, and commit in
But who is on the panel?
On 10/17/05, Michael O'Connell [EMAIL PROTECTED] wrote:
Event: 2005 Insightful User Conference
Dates: Oct 26-27, 2005
Location: Princeton, NJ
URL: http://www.insightful.com/news_events/2005uc/ for details on pricing,
hotel accommodations and to register for this
So the answer seems to be Insightful folks and industry folks.
On 10/17/05, A.J. Rossini [EMAIL PROTECTED] wrote:
But who is on the panel?
On 10/17/05, Michael O'Connell [EMAIL PROTECTED] wrote:
Event: 2005 Insightful User Conference
Dates: Oct 26-27, 2005
Location: Princeton, NJ
no, there isn't a general logging package.
On 10/12/05, Spencer Graves [EMAIL PROTECTED] wrote:
I just got 145 hits from RSiteSearch(debugger). Does this help?
spencer graves
Omar Lakkis wrote:
Is there a log4j, or similar, package for R?
read the posting guide! http://www.R-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
__
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expensive
professional version.
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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nearer the equator though :)
I'll keep it in the grocery store. Nothing like a whole aisle or 2 of
quality chocolate, instead of having to make it yourself.
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J
the posting guide! http://www.R-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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it for a limited class, but in a painful (very
non-seemless) manner.
This would be required to use R in this context, at least for what I've seen.
best,
-tony
On 7/21/05, Frédéric Ooms [EMAIL PROTECTED] wrote:
I am looking for both.
Fred
-Original Message-
From: A.J. Rossini [mailto:[EMAIL
NameAnthony J. Rossini
Company Novartis Pharma AG
Address Biostatistics
WSJ-27.1.012
City State Zip CH-4002 Basel
Country Switzerland
Phone (206) 543-2005
Email [EMAIL PROTECTED]
luke
On Thu, 21 Jul 2005, A.J. Rossini wrote:
Just with R
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
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PLEASE do read
-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
Is anyone working on an S4 classes for dummies book/paper/package?
If so, please contact me off-list.
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED
in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
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does this (i.e. grid-enabling R with
a grid approach which has checkpointing). I've been looking at this
at work in a different context.
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED
in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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PLEASE do read the posting guide! http://www.R-project.org/posting
://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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PLEASE do read
is incomprehensible to the human
mind, then S4 methods are indeed the way to go.
Which humans? I know quite a few for which the above isn't true.
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
be better asked on the ess-help list.
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J
-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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mistakes (AJR, 4Jan05).
A.J. Rossini
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
.
In-depth and up-to-date are tradeoffs rather than being complementary.
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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the SNOW package but that did not look so bad.
Regards
Lars
--- Prof Brian Ripley [EMAIL PROTECTED] wrote:
On Thu, 24 Mar 2005, A.J. Rossini wrote:
Looks like you are trying to install source
tarball on Windows without
the relevant toolset (compiler, etc)?
To save
/mailman/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
__
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PLEASE do read
/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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PLEASE do read the posting guide! http
; S-PLUS would be a
related/relevant target).
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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PLEASE do read
(AJR, 4Jan05).
A.J. Rossini
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
languages, but that might be counterproductive.
Peter Dalgaard wrote:
A.J. Rossini [EMAIL PROTECTED] writes:
For OBVIOUS reasons, is there any chance that we could introduce
package() and deprecate library()?
usepackage() or usePackage() has been suggested, but someone got
/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED
/mailman/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED
mistakes (AJR, 4Jan05).
A.J. Rossini
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-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
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! http://www.R-project.org/posting-guide.html
--
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
[EMAIL PROTECTED]
__
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in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
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PLEASE do read the posting guide! http://www.R-project.org/posting
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
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-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
intercepts, but what I want is only one single intercept.
Then you don't want a random intercept, right?Those are fitted
estimates, if I'm not mistaken.
best,
-tony
Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).
A.J. Rossini
the posting guide! http://www.R-project.org/posting-guide.html
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---
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general solution, eh?) rather
than spoonfeed answers. This is a bit unlike some of the program
language mailing lists where the care and feeding of personal egos is
also part of the scene. (of course, I'm not referring to the wizards
lists...!).
best,
-tony
---
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---
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)
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---
A.J. Rossini
[EMAIL PROTECTED
://tolstoy.newcastle.edu.au/R/help/04/04/0723.html
and
http://tolstoy.newcastle.edu.au/R/help/04/04/0616.html
which is from Tony and has the following small function:
installNewCRANPackages - function() {
## (C) A.J. Rossini, 2002--2004
test2 - packageStatus()$avail[Status]
install.packages
-guide.html
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best,
-tony
---
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] mailing list
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could help me
Meinhard
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-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
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That looks like what happens if one runs R from one of the older
Emacs sub-shells. (esp the pager bit).
It's possible but unlikely that something wrong with comint. ESS
should have redirected the output of
?sink
to a different buffer.
Another possibility is that you've configured
Thomas Schönhoff [EMAIL PROTECTED] writes:
Hello,
Peter Dalgaard schrieb:
Thomas Schönhoff [EMAIL PROTECTED] writes:
Hmm, I'm running R within Emacs without calling ESS diretly. Thought,
that ESS is activated by default when invoking R!?
Isn't this true!?
I thought you might think that...
That sounds like the result of having a too-old nvidia-common and
booting between 2.4 and 2.6 kernels.
I believe that nvidia until 2.6 likes the TLS libs, under 2.4 doesn't.
Thomas Schönhoff [EMAIL PROTECTED] writes:
Hello,
hopefully someone will remember my previous problem to load the
You can apt-get RGL in sid.
Thomas Schönhoff [EMAIL PROTECTED] writes:
Hello,
I just tried to get Rcmdr package working, resulting in:
--
library(Rcmdr)
Loading required package: tcltk
Loading required package:
Have you checked Johnson and Kotz? That's the obvious place to start
looking for distributions beyond the usual.
Rolf Turner [EMAIL PROTECTED] writes:
I've built R functions to ``effect'' a particular distribution, and
would like to find out if that distribution is already ``known'' by
an
Parallel programming with snowFT
Our package snowFT is now available at CRAN. It is an extention of the
package snow, which adds fault tolerance (in the sense of recomputing
computational units when hardware/network failures occur on compute
nodes) and a tighter notion of reproducibility for
I think I'd have to respectfully disagree with both Brian and
Deepayan, as to whether it should be obvious. It is reasonable
(principle of least suprise) to expect orientation of the plot to
match the print order of the matrix. I would have expected Brian's
one-liner to be in the help page,
Richard A. O'Keefe [EMAIL PROTECTED] writes:
Once you know what image() is _intended_ to do with a matrix,
you can figure out the transposing and reversing you need for any
other view. It's knowing you need to that's the problem.
This is a much better statement of my point, and precisely why
Yao, Minghua [EMAIL PROTECTED] writes:
Hi,
Anyone can tell me how to generate A01, A02, ..., A99?
paste(A, 1:99, sep=) generates A1, A2,..., A99. This is not what I want.
c(paste(A0,1:9,sep=),paste(A,10:99,sep=))
?
--
Anthony Rossini Research Associate Professor
One thought -- the first course I took, I taught physicians
XLispStat. They appreciated it since it allowed them to do logistic
regression without spending large $$$.
Now, that isn't quite true any more. So might depend on how times
have changed.
Jacob Wegelin [EMAIL PROTECTED] writes:
Need to install R with the shared libraries (it's a config option).
Paul Shannon [EMAIL PROTECTED] writes:
I have successfully installed Rserv (http://stats.math.uni-augsburg.de/Rserve)
on Mac OS, but I have trouble on two different linux platforms.
R CMD INSTALL Rserve_0.3-10.tar.gz
Khamenia, Valery [EMAIL PROTECTED] writes:
I think just smarter C-c C-r would be kind of trade-off here.
hm, maybe there are some other voices here similar to mine?
It would be easier to discuss the subj.
Within ESS, you've got the ess-thread-eval (similar to
ess-chunk-eval), so the guts
What exactly do you mean by this?
1. generation of Sweave-style docs from R programs or interaction? A
related approach is the reviveable statistical analysis (the
authors/researchers will have to forgive me for not recalling the WWW
site or their Uni!)
2. tools for doing docs and analysis at
If you name chunks that should be run together the same thing
(i.e. similar to how Noweb suggests that you should create documents),
then ess-eval-thread will evaluate all chunks in the thread
(i.e. that noweb would have sent to the same file upon tangling).
This is similar to the ess-eval-chunk
Deepayan Sarkar [EMAIL PROTECTED] writes:
Is selecting and 'C-c C-r'-ing the 3 chunks separately that bad?
Yes. The UI should take care of it for him.
Others may have better suggestions.
A bit more work on the chunk evaluation approach within Emacs is one;
it almost does what is needed,
Seth Falcon [EMAIL PROTECTED] writes:
Having used JUnit and PyUnit, I was pleased to see the release of the
RUnit package on CRAN.
I'm wondering if there are any RUnit users out there that would be
willing to share some tips on how they organize their code to work with
RUnit.
If you've got access to unix tools (i.e. linux or cygwin), consider
the cut command. Great for column selection.
Thomas Lumley [EMAIL PROTECTED] writes:
On Mon, 9 Aug 2004, F Duan wrote:
Dear R people,
I have a very big tab-delim txt file with header and I only want to import
several
Sounds like you need a course in statistics. This is a 2-sample
comparison problem. It might be worth finding a local stat
consultant, it shouldn't take much time.
James R. Graham [EMAIL PROTECTED] writes:
Hello All,
Forgive me if this a blatantly newbie question or not germane to the
OpenGL or MESA librares.
Korponai János [EMAIL PROTECTED] writes:
X-BeenThere: [EMAIL PROTECTED]
X-Mailman-Version: 2.1.5
Precedence: list
Reply-To: [EMAIL PROTECTED]
List-Id: Main R Mailing List: Primary help r-help.stat.math.ethz.ch
List-Unsubscribe:
Thomas Lumley [EMAIL PROTECTED] writes:
Personally, I find this the easiest way to look at the source. You can
browse the source on https://svn.r-project.org/R/ if you are using a
binary distribution, rather than downloading the whole thing.
Except that you probably don't want to, i.e. grab a
Lijuan Wang [EMAIL PROTECTED] writes:
I am using Splus ...
So why post to an R list?
best,
-tony
--
Anthony Rossini Research Associate Professor
[EMAIL PROTECTED]http://www.analytics.washington.edu/
Biomedical and Health Informatics University of
In the process of evaluating new shells, I've run into a few problems
with zsh and the R CMD build, R CMD check scripts.
I'd like to ask a few questions off-line if anyone has experience with
R and the zsh completion/substitution functionality.
Note that bash continues to work as well as
For those tracking debian unstable, note that thanks to Dirk E.,
installation is now mostly trivial.
(i.e. for snow, rpvm, rmpi, rsprng, and the sprng libraries).
best,
-tony
--
Anthony Rossini Research Associate Professor
[EMAIL PROTECTED]
I like SWIG (well, it facilitates wrappers for Python really well),
but it's not perfect.
I've not delved into the difficulties in any detail yet, but we've had
problems with mixing SWIG and Boost.python for connections with Python
code -- and the Boost.python mechanism feels like DTL's RSyour
[EMAIL PROTECTED] (A.J. Rossini) writes:
I like SWIG (well, it facilitates wrappers for Python really well),
but it's not perfect.
I've not delved into the difficulties in any detail yet, but we've had
problems with mixing SWIG and Boost.python for connections with Python
code
I ran Debian/PPC for about a year, 1-2 years ago -- it worked fine at
that point, on a G3 iBook.
Of course, you get weird looks with MacOS / Linux dual boots, but
that's different than whether it functions.
I switched back to intel-based hardware because it was cheaper and
faster, not
Barry Rowlingson [EMAIL PROTECTED] writes:
It's not that I think SAS is such great software,
it's not. But I really hate badly designed
software. R is designed by committee. Worse,
it's designed by a committee of statisticians.
They tend to confuse numerical analysis with
Dirk Eddelbuettel [EMAIL PROTECTED] writes:
On Mon, Jun 14, 2004 at 04:01:02PM -0400, Roger D. Peng wrote:
People who compile from source still need to install the necessary rpms.
Which is why another Linux distribution uses the concept of Build-Depends :)
Which is another reason why I use
[EMAIL PROTECTED] writes:
Here is my best solution so far using $RANDOM in bash
or maybe somebody has pure R solution ?
Sure -- use the rsprng or rlecuyer packages from CRAN, which support
(independent?) streams of random numbers from a common set of seeds.
best,
-tony
--
[EMAIL PROTECTED]
Zhu Wang [EMAIL PROTECTED] writes:
Now I think maybe two problems: one is that maybe I do not have Lapack and Blas
installed
I think this definitely needs to be solved.
--
[EMAIL PROTECTED]http://www.analytics.washington.edu/
Biomedical and Health Informatics University of
For reproducibility, you probably want to specify the starting seeds.
I'd worry about using systime. (for selecting the seeds, you might
consider random draws from a uniform).
best,
-tony
[EMAIL PROTECTED] writes:
I want to start R processes on multiple processors from single shell
script
Might be a compilation problem, or change of system libraries.
[EMAIL PROTECTED] [EMAIL PROTECTED] writes:
Hi,
I'm using the function clustalw in packages dna, but every time i have a
segmentation fault!
In your opinion What is the problem?Memory?
Please help me
Daniela
It's on Jim Lindsey's WWW site. It's a nice package. We've got an
extension that is somewhat incomplete that incorporates BLAST results
(from NCBI, though could config for local use) in a package called
BioSeq1 on Bioconductor's dev site -- I don't think that the CVS
viewer is available, but I
, this categorization has cleared up a few things I have found
confusing. But should I read this to mean that SNOW would not run on
a system or kernel level parallel setup?
Thanks,
Paul Gilbert
A.J. Rossini wrote:
Also see SNOW (which simplifies parallel programming, sits on top of
rpvm, Rmpi
Also see SNOW (which simplifies parallel programming, sits on top of
rpvm, Rmpi, or a socket-based system).
Depends on whether you want parallelism on the:
1. User-level -- the libraries such as PVM, LAM-MPI, etc will help,
and there are various packages which provide an API
Dan Bolser [EMAIL PROTECTED] writes:
Yikes! whatever happened to a good old 'INSTALL' file?
There is a nice README file which you should read...
People should not assume that just because you use linux you automatically
know what you are doing!
Apparently :-).
First it took me ages to
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