on in the translations, and
he's away until Oct 9.
Duncan Murdoch
On 10/3/2006 9:00 PM, ronggui wrote:
This morning I downloaded R-2.4.0 and install in under Windows. I customized
the installation and choose Message translations,but I could not launch
Rgui.exe successfully( Rterm.exe worked fine). If I
that better_sigma will look up the variables t, q, lam1, and
lam2 in whatever environment it was defined in, so if you have a
function that modifies local copies of those variables and then calls
better_sigma, you should define better_sigma within that function.
Duncan Murdoch
So I am making
if the direction isn't the one you want.
Duncan Murdoch
Thank you
Joe
Duncan Murdoch wrote:
Joe Byers wrote:
The documentation for surface3d and rgl.surface in the package RGL
states
'surface3d' always draws the surface with the `front' upwards
(i.e. towards higher 'z' values). This can
, so you'll need to talk to the maintainer of
that package (Fridolin Wild, whose email address you can get by
library(help=lsa)) to find out the real cause.
Duncan Murdoch
data(stopwords_en)
CCauto = textmatrix( CultureMineTXT , minWordLength=3,
minDocFreq=50, stopwords
On 10/3/2006 2:27 PM, Joe Byers wrote:
Thanx for the help. Other comments are posted inline below.
Joe
Duncan Murdoch wrote:
On 10/3/2006 11:31 AM, Joe Byers wrote:
thanks for the reply.
I wish I could create a self contained example of the problem, but I
can't.
My task
On 10/3/2006 4:59 PM, roger bos wrote:
Dear useRs,
Trying to replace the diagonal of a matrix is not working for me. I
want a matrix with .6 on the diag and .4 elsewhere. The following
code looks like it should work--when I lookk at mps and idx they look
how I want them too--but it only
.
Message translations is Simplified Chinese.
Did you test any of the betas or release candidates? I run an English
language version of Windows, and I don't even get offered the chance to
install in Simplified Chinese, so I certainly didn't test this.
Duncan Murdoch
sort of thing do you want to do?
Duncan Murdoch
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length 1
is okay; in fact, that gives a warning).
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented
suspect it's the row names.
Duncan Murdoch
a-c(rep(1:100,1))
b-c(rep(1:100,1))
c1-cbind(a,b)
cdf-as.data.frame(cbind(a,b))
cm-as.matrix(cbind(a,b))
object.size(a)/100
object.size(b)/100
object.size(c1)/100
object.size(cdf)/100
object.size(cm)/100
] 8.000448
object.size(cm)/100
[1] 8.000296
(These are in a recent release candidate of 2.4.0.)
Duncan Murdoch
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PLEASE do read the posting guide http://www.R
that update ? Is there anyway to get rid of this message ?
Please show some code that leads to the message. You shouldn't get it
in new objects, but there could be a bug in R or in a package you're using.
Duncan Murdoch
Thanks a lot .
best
- Original Message -
From: Duncan
will fail, and that may lead to other errors later.
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented
it's a bad idea to use one, because it might give a
mistaken impression about the meaning of something like
a = 1
+ 2;
It's better to avoid semi-colons whenever possible, to make sure the C
parser in your brain throws an exception and lets the R parser take over.
Duncan Murdoch
idea to describe
what a project drawer is. The population of people who know Textmate
and Windows text editors is probably pretty small.
Duncan Murdoch
Thanks,
Graham
[[alternative HTML version deleted]]
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consequences.
Duncan Murdoch
John C Frain
output of R session started with Sciviews
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications
to some
strange errors, so delay was deprecated and is now defunct. (I don't
really know what the result of the assignment above would have been.)
Duncan Murdoch
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PLEASE
mean was not found
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained
to build few. But still RGui.exe shows warning saying
there is no package called 'datasets', 'utils' etc. Can someone please point
me how to resolve this issue?
Probably the same cause. base is messed up, and that's going to cause
all sorts of trouble.
Duncan Murdoch
Thanks in advance
.
How can I get the x and y values to appear on the plot?
You could try persp3d in the rgl package; it has more flexibility about
labels (but not as much as most R graphics: you can't change fonts, for
instance).
Duncan Murdoch
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.
Duncan Murdoch
On 9/26/06, Dirk Eddelbuettel [EMAIL PROTECTED] wrote:
On 26 September 2006 at 22:17, Gabor Grothendieck wrote:
| The real problem is that one wants to pipe the data in, not the
| R source. The idea is that one successively transforms the
| data in successive elements
not generally available in Windows, so we were stuck
with C.
Duncan Murdoch
'r' is cute, but going down the road of tools with the same name
except for caps leads to confusion (for me). For example, R CMD
build/INSTALL still catches me up after a number of years.
That's a different
On 9/27/2006 7:06 AM, Duncan Murdoch wrote:
Gabor Grothendieck wrote:
I think this is quoted out of context. I was referring to Duncan's post
which shows an example of piping R code.
No, that was Jeffrey's post that showed the pipe. All that was in my
post was a question about why
the
script that invokes R? That would avoid the r/R clash on MacOSX and
Windows. In Windows R is R.exe, not a script, so some adjustment would
be needed there, but that shouldn't be difficult.
Duncan Murdoch
Equivalently, commands that are to be evaluated can be given on
the command
), to=max(x), len=200)
lines(x0, dnorm(x0, mean=mean(x), sd=sd(x)), type=l, lwd=2)
Duncan Murdoch
I tried this one using a high level plot function as well:
curve(dnorm, n=1, add=TRUE, xlim=range(x))
The advantage is, now I can set an ideal population of 1 to get the
ideal curve
posted. As every message in this mailing list says, PLEASE do read the
posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Duncan Murdoch
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was used); if that's true
for your code, then you'll need to fix it. emptyenv() now gives you an
empty environment if that's what you really want.
Duncan Murdoch
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to put the frames together. It
supports GIF; I think it also supports MPEG and maybe some other
animated formats.
Duncan Murdoch
Here is the script:
rm(list=ls())
library(lattice)
# I start defining the analytical functions needed to get the density
as a function of time
for myClass objects, so if x
was a myClass object, it would be called when something like
x$name
was used in an expression. It would call an external function named
foo_name, passing x as an argument.
Duncan Murdoch
something similar to:
plot.lm()
Thanks in advance !
Greg
arises? Thanks a lot.
We don't support builds under Cygwin.
Duncan Murdoch
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and provide
- round(pow)
if (pow 0) {
mat - solve(mat)
pow - abs(pow)
}
result - diag(nrow(mat))
while (pow 0) {
result - result %*% mat
pow - pow - 1
}
result
}
Now P %^% 3 will give you the matrix cube.
Duncan Murdoch
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to that, or just write your own functions and put them in your own file.
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide
not to see new threads
until a random delay has passed. Followups to the threads that arrived
during this waiting period would all be sent at once, so if you see a
message doesn't have responses, you know it's safe to write one.
Duncan Murdoch
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is very large.
- On the other hand, using size=1 is usually not a very efficient way
to program anything, so anyone who does it might not notice the gain...
Duncan Murdoch
There is no such thing as urand in base R
cheers and Thanks,
Sean
On 18/09/06, Duncan Murdoch [EMAIL PROTECTED
.
Duncan Murdoch
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and provide commented, minimal, self-contained, reproducible code.
as.integer()
will work.
Duncan Murdoch
is floor() better than as.integer?
Is this correct? Is the probability of the integer t the same as the
integer 1 or 0 etc... I have done some rudimentary testing and this
appears to work, but power being what it is, I can't see how to
realistically
going to have to look up the parameters that are
appropriate to your target density (i.e. shape, rate, scale), I'm not
sure how useful this will be. It might be easier just to code the call
to dgamma directly.
Duncan Murdoch
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the collapse argument to paste:
paste(x, collapse=)
Or, if you want a number,
sum(x * 10^rev(1:length(x) - 1))
Duncan Murdoch
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PLEASE do read the posting guide http://www.R
, in cran.r-project.org/bin/windows/base/rtest.html (though I
notice the version there is a week old; I'd better kick the build script).
Duncan Murdoch
'
The correct result for the average annual loss, calculated using a
battle tested FFT engine, is 1,609,361 The summary stats from my last
On 9/15/2006 7:51 AM, Mark Pinkerton wrote:
I have just installed 2.4.0 alpha and the problem persists. Here is the
output of the run:
Thanks. I'll try your script and see if I can track down what's going on.
Duncan Murdoch
# Summary stats
summary(totals.losses1)
Min. 1st Qu
On 9/15/2006 7:51 AM, Mark Pinkerton wrote:
I have just installed 2.4.0 alpha and the problem persists. Here is the
output of the run:
When I run it, I get a series of warning messages from qbeta. Do you
get those?
Duncan Murdoch
# Summary stats
summary(totals.losses1)
Min. 1st
were inaccurate, and you didn't think that was worth
mentioning?
I'll continue working on this after Risk Management Solutions
compensates me for my wasted time, and pays me in advance for additional
work.
Duncan Murdoch
Mark Pinkerton
Risk Management Solutions
Peninsular House
30
}\leq x x_{i+1} \]
\[ F(x)=1 \ \text{if} \ x x_{i+1}
\]
This sounds an awful lot like a class assignment. You should ask your
instructor for help with it.
Duncan Murdoch
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Qu. Max.
2.803e-06 4.583e-02 1.078e-01 1.419e-01 2.047e-01 8.861e-01
and I think those results look reasonable (and the qbeta method has a
smaller mean, this run).
Duncan Murdoch
Thanks
Mark Pinkerton
Risk Management Solutions
Peninsular House
30 Monument Street
London EC3R
the following?
- verify that the behaviour still happens in the current alpha test
version
- try to simplify the example code so someone else can run it? It
could be that certain values of alpha and beta trigger a bug but the
ones I tried were fine.
Duncan Murdoch
negative column
values; see the man page). It will break the read up into blocks, so
the large size of the original file shouldn't be a problem.
Duncan Murdoch
Sometimes I would also like to format the data after it has been read. For
example, the ASCII file has price in columns 100 to 105
.
Duncan Murdoch
library(lattice)
plot.vol- wireframe(volcano,
aspect = c(1,1.5),
scales=list(arrows=F),zlab=list(Z-axis,rot=90))
postscript(example_plot_3.eps, width = 14.0/2.54, height = 19.0/2.54,
horizontal = FALSE, onefile = FALSE,paper=special
, but I don't know anyone working on that right now.
Duncan Murdoch
Mike Prager
Southeast Fisheries Science Center, NOAA
Beaufort, North Carolina USA
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PLEASE do
On 9/12/2006 9:27 AM, Michael Prager wrote:
Duncan Murdoch wrote:
On 9/11/2006 3:57 PM, Michael Prager wrote:
R 2.3.1 on Windows XP Professional.
I am writing some scripts to generate examples. The Rgui menu
item File, Save to File is helpful. Is there perhaps an
equivalent R
there, too.) Thanks for the report.
I'll send a copy of this to the bugs list, but I won't be able to
attempt to fix it.
Duncan Murdoch
f-function(LL)
{ for (ll in LL)
{ ll$txt-changed in f
}
}
l-list(txt=original value)
L-list(l)
L[[1]]$txt
f(L)
L[[1]]$txt
gives (using
) {
if (x x + mid) u - mid
else l - mid
mid - (l + u)/2
}
u
}
f(1e300)
[1] 7.438715e+283
1e300 + 7.438715e+283 1e300
[1] TRUE
1e300 + 7.438714e+283 1e300
[1] FALSE
Duncan Murdoch
rksh
On 11 Sep 2006, at 10:50, Sundar Dorai-Raj wrote:
Robin Hankin
On 9/11/2006 8:20 AM, Prof Brian Ripley wrote:
On Mon, 11 Sep 2006, Duncan Murdoch wrote:
On 9/11/2006 6:15 AM, Robin Hankin wrote:
Hi Sundar
thanks for this. But I didn't make it clear that I'm interested in
extreme numbers
such as 1e300 and 1e-300.
That's not relevant
On 9/11/2006 9:01 AM, Prof Brian Ripley wrote:
On Mon, 11 Sep 2006, Duncan Murdoch wrote:
On 9/11/2006 8:20 AM, Prof Brian Ripley wrote:
On Mon, 11 Sep 2006, Duncan Murdoch wrote:
On 9/11/2006 6:15 AM, Robin Hankin wrote:
Hi Sundar
thanks for this. But I didn't make
On 9/11/2006 11:01 AM, Robin Hankin wrote:
Hi Duncan
[snip]
On 11 Sep 2006, at 12:12, Duncan Murdoch wrote:
Here's my version: not tested too much.
f - function(x) {
u - x
l - 0
mid - u/2
while (l mid mid u) {
if (x x + mid) u - mid
else l - mid
permission on the repository you need to convince the
core group that you should be invited to join; there are currently 17
members, and I think there are 17 conflicting criteria for membership,
so I don't know any rule other than make it obvious that it's better
you're a member than not.
Duncan
is to find out if SQLBASE supports ODBC
connections. If it does, then you can use RODBC. If not, then you're
probably out of luck.
Duncan Murdoch
I hope I would be understood. I am not a database specialist and, being
french, my english is a little bit poor.
Thanks for your response
inherit this nice property. rgl (for 3d graphics) also allows
items to be removed in a fairly inflexible way (only in the reverse
order of the order drawn); the next release will make this more flexible.
Duncan Murdoch
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says about it.
Duncan Murdoch
Thanks for your help.
Mark
Mark W. Kimpel MD
(317) 490-5129 Work, Mobile
(317) 663-0513 Home (no voice mail please)
1-(317)-536-2730 FAX
-Original Message-
From: Duncan Murdoch [mailto:[EMAIL PROTECTED]
Sent: Thursday
to illustrate the problem?
We don't have all the variables used in that example. I think you
should be able to do it with just base packages attached; if not, it's
likely a problem with one of the contributed packages, rather than with R.
Duncan Murdoch
__
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datasets
[7] base
Mark W. Kimpel MD
(317) 490-5129 Work, Mobile
(317) 663-0513 Home (no voice mail please)
1-(317)-536-2730 FAX
-Original Message-
From: Duncan Murdoch [mailto:[EMAIL PROTECTED]
Sent: Thursday, August 31, 2006 12:52 PM
To: Kimpel, Mark
(unsuccessful) time trying to write a function of my own
but can't seem to get this to work properly.
I doubt it, because this doesn't look like a standard problem.
Duncan Murdoch
Any hints would be greatly appreciated.
Harold
[[alternative HTML version deleted
|Folder options...|View|Hide extensions for known file types
(where each of the 4 components in that path is a different kind of
interface element. I love the rich Windows user interface!)
Duncan Murdoch
(Gawd, but I
***hate*** Windoze!!!) If that's not the problem, can you suggest
what
On 8/24/2006 4:34 PM, Gaspard Lequeux wrote:
Hej,
On Thu, 24 Aug 2006, Duncan Murdoch wrote:
On 8/24/2006 11:19 AM, Gaspard Lequeux wrote:
On Wed, 23 Aug 2006, Duncan Murdoch wrote:
On 8/23/2006 5:15 PM, Gaspard Lequeux wrote:
When exporting a image from rgl, the following error
On 8/24/2006 11:19 AM, Gaspard Lequeux wrote:
Hej,
On Wed, 23 Aug 2006, Duncan Murdoch wrote:
On 8/23/2006 5:15 PM, Gaspard Lequeux wrote:
When exporting a image from rgl, the following error is encountered:
rgl.postscript('testing.pdf', fmt=pdf)
RGL: ERROR: can't bind glx context
, and have it as a long file?
Lots of functions in R are set up to use dataframes rather than arrays
or subsets of arrays, so this might be more convenient.
Duncan Murdoch
[[alternative HTML version deleted]]
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of my analysis and doesn't seem worth agonising hours over. I will
probably kick myself when someone tells me the answer!
Please don't kick yourself :-)
Duncan Murdoch
Thank you very much,
Zoe
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https
)
Version of R used: R 2.3.1; i486-pc-linux-gnu; 2006-07-13 01:31:16;
Anyway, rgl is an excellent package.
Thanks. It's still getting better.
Duncan Murdoch
/Gaspard
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; 2006-07-13 01:31:16;
Running Debian GNU/Linux testing (Etch).
That looks like an X11 error to me, not something that I'm very likely
to be able to fix. If you can debug the error, it would be helpful.
Duncan Murdoch
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[inf]
else weighted.mean(x, w)
in your own code.
Duncan Murdoch
Cheers
Yan
p.s. a while ago I suggested using '??xxx' as a shortcut for
help.search(xxx), much like '?xxx' is a shortcut for help(xxx). I
was just wondering if anyone had any more thoughts on the matter?
Suggestions like
don't know of anything exactly as you describe. I'd recommend
thinking about suitable restart points in the computation, and manually
using save() or save.image() in your script.
Duncan Murdoch
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https
:
From CHANGES:
R could crash when very low on memory. (PR#8981)
You should also get more physical memory. 512MB is not much for
handling a 200MB of data. You can fairly easily benefit from increasing
up to 2 GB, and will benefit (with some work) if you have even more, up
to 4 GB.
Duncan
.)
Duncan Murdoch
Sincerely, Markus
Markus Preisetanz
Consultant
Client Vela GmbH
Albert-Roßhaupter-Str. 32
81369 München
fon: +49 (89) 74217-113
main: +49 (89) 74217-150
fax: +49 (89) 74217-250
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http
observation y, a single parameter mu, design matrix X = 1, and weight
-1, that formula becomes
b - y,
but that is the worst possible estimator in a least squares sense. The
residual sum of squares can be made arbitrarily large and negative by
setting b to a large value.
Duncan Murdoch
b
that. The closest is
{ bringToTop(stay=TRUE); bringToTop(-1) }
but that only works if the previous window was the console.
Duncan Murdoch
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PLEASE do read the posting
you want is
vec - 100 + c(0, cumsum(runif(49, -2, 2)))
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide
own.
Duncan Murdoch
Rgds
Chong Hui
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
compiler used to build R and packages
includes objdump and dlltool which can display DLL contents in a human
readable format.
Duncan Murdoch
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PLEASE do read the posting
)
b - matrix(runif(100), 10,10)
matrix(rgb(r,g,b),10,10)
The final call to matrix() is needed because rgb() loses the dimension
attribute from its result.
Duncan Murdoch
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: ifelse() evaluates all tests in a vector, if() only
evaluates one. You probably want ifelse() in both cases.
Duncan Murdoch
1.Way one I use the data for x2=1 and run the program. It works for me.
Tthe program is described as below:
function (parameters,y1,x11)
{
p-parameters[1
2.2.1 is obsolete; you should be using 2.3.1 at a
minimum, perhaps 2.3.1 patched), then there's a good chance someone will
be able to track down the bug and fix it.
Duncan Murdoch
Best,
Robert McFadden
?xml version=1.0 encoding=UTF-16?
DATABASE
EXE NAME=Rgui.exe FILTER
the dataframe. The
error message makes it look as though you don't.
If offend is a column in the dataframe, then you would use
jacs.data[jacs.data$offend 0, ]
or
subset(jacs.data, offend 0)
Duncan Murdoch
can anyone help? Thanks nathan
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error means this is not guaranteed to be positive
semi-definite, but it will be very close.
Duncan Murdoch
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them in a single figure with labels identifying each
one of them?
This thing is getting me almost crazy...
See the corresp() function in MASS and the cca() function in vegan.
Both of these can produce biplots.
Duncan Murdoch
__
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it.
If you can find a script (including set.seed() to some value) that
reliably causes a crash in R-patched, could you let me know?
You can get R-patched from CRAN in the bin/windows/base directory.
Duncan Murdoch
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), ...) {
result - rollmean(x, k, na.pad, align, ...)
return(result*100)
}
...
Duncan Murdoch
Any guidance appreciated.
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
email: [EMAIL PROTECTED]
tel: 604
as
kernels - list(gauss, epan, rectangular)
and then pass kernels[[j]] instead of kernels[j].
Or your nawaline2 function could have something like
if (is.character(kern)) kern - get(kern, envir=parent.frame())
to go looking for the object with the name stored in kern.
Duncan Murdoch
has
with this; I didn't really
look at it in detail.
Duncan Murdoch
On 7/20/2006 5:09 PM, Fabian Scheipl wrote:
I´m working on an R-implementation of the simulation-based finite-sample
null-distribution of (R)LR-Test in Mixed Models (i.e. testing for
Var(RandomEffect)=0) derived by C. M. Crainiceanu
wrong
in the code. Doug, can you spot what the problem might be?
Duncan Murdoch
-thomas
# For corExp:
set.seed(26)
for(i in 1:length(CO2$conc)){
CO2$conc[i]-(CO2$conc[i]+rnorm(1))
}
fm1CO2.lis - nlsList(SSasympOff, CO2)
fm1CO2.nlme - nlme(fm1CO2.lis, control = list
(vm)
points(x,y,col='blue')
and if you want the axes,
axis(1)
axis(2)
box()
Duncan Murdoch
plot(x,y,col='blue')
when you look at the plot of the mosaic overlayed with the raw data, the
mosaic should have each data point in 1 cell, however that is not the case -
any help would
posted a list of the newsgroups here:
http://finzi.psych.upenn.edu/R/Rhelp02a/archive/75239.html
recently.
Duncan Murdoch
Best, Darren
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PLEASE do read
or on the bug list as a wishlist
item. Otherwise it might get lost.
Duncan Murdoch
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
into current versions. For example,
if you installed a package before, but didn't re-install it with 2.3.1,
or if you are reloading a workspace saved in an earlier version.
Duncan Murdoch
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On 7/11/2006 6:59 PM, Patrick Connolly wrote:
On Tue, 11-Jul-2006 at 06:41PM -0400, Duncan Murdoch wrote:
[]
|
| options(warn=2) will convert warnings into errors, so traceback will work.
|
| A common situation where I've seen that error is with binary saves from
| earlier
), labels=expression(1, 10^2, 10^4, 10^6))
axis(2, at=10^c(0,2,4,6), labels=expression(1, 10^2, 10^4, 10^6))
box()
Duncan Murdoch
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there for the C code. XFig is in the devPS.c file.
Duncan Murdoch
Also -- a more general question on this topic -- presumably
any R graphics device is driven by a stream of raw graphics
data in some presumably device-independent format, which it
then translates. Where can I find
On 7/10/2006 8:51 PM, Randy Zelick wrote:
Hello there,
This question is relative to WindowsXP, using R 2.2.1:
Time to upgrade. choose.dir (mentioned by Rich) was introduced in the
next release.
Duncan Murdoch
I am looking for a function that allows a user to interactively choose
to --no-restore-data,
although this presumably would have to be decided in a .First()
function or something like it.
This one can't currently be changed.
Duncan Murdoch
on a similar note, I would love a CMD BATCH invokation to output just
one line to stderr at the end of its run which tells
values exist...
Duncan Murdoch
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basename() works. If you're on a system that doesn't think \\ is a path
separator, you could do something like
x - C:\\Documents and Settings\\myName\\My
Documents\\RProjects\\Project1\\file.name.csv
basename(gsub('','/',x))
Duncan Murdoch
Charles Annis, P.E. wrote:
Greetings, R-ians
On 7/8/2006 3:44 PM, justin rapp wrote:
I apologize for my constant questions but I am new to R and trying to
gain an appreciation for its capabilities. The following task is easy
in Excel and I was hoping somebody could give me a quick explanation
for how it can be acheived in R so I can
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