Re: [R] lines at margin?

2006-10-09 Thread Marc Schwartz (via MN)
On Mon, 2006-10-09 at 10:56 -0400, Mike Wolfgang wrote: Hi list, I want to add some lines at margin area of one figure. mtext could add text to these margins, can I add lines with different lty parameters? Thanks, mike You can do it, but it will take some fiddling to get the coordinates

Re: [R] How can I delete components in a column ?

2006-10-09 Thread Marc Schwartz (via MN)
On Mon, 2006-10-09 at 17:15 +0200, Yen Ngo wrote: Hi all R-helpers, i am a new R-user and have problem with deleting some components in a column. I have a dataset like Name Idx empty 2 empty 3 anone2 bnone3 d

Re: [R] Transcript of Conservative ANOVA tables

2006-10-09 Thread Marc Schwartz (via MN)
On Mon, 2006-10-09 at 15:43 +, Gregor Gorjanc wrote: Dieter Menne dieter.menne at menne-biomed.de writes: Dear friends of lmer, http://wiki.r-project.org/rwiki/doku.php?id=guides:lmer-tests I have put a transcript of the long thread on lmer/lme4 statistical test into the

Re: [R] lmer output

2006-10-06 Thread Marc Schwartz (via MN)
On Fri, 2006-10-06 at 17:05 +0100, Mike Ford wrote: When I do lmer models I only get Estimate, Standard Error and t value in the output for the fixed effects. Is there a way I get degrees of freedom and p values as well? I'm a very new to R, so sorry if this a stupid question. Thank

Re: [R] Stopping ctrl-\ from qutting R

2006-10-06 Thread Marc Schwartz (via MN)
On Fri, 2006-10-06 at 14:46 -0400, Martin C. Martin wrote: Hi, In the Linux (FC3) version of R, ctrl-\ quits R. This wouldn't be so bad, but on my keyboard, it's right next to ctrl-p and I tend to hit it by accident. Is there any way to turn that off? Open your favorite terminal

Re: [R] is it possible to fill with a color or transparency gradient?

2006-10-06 Thread Marc Schwartz (via MN)
On Fri, 2006-10-06 at 16:15 -0400, Eric Harley wrote: Hi all, Is there a way to fill a rectangle or polygon with a color and/or transparency gradient? This would be extremely useful for me in terms of adding some additional information to some plots I'm making, especially if I could define

Re: [R] how ot replace the diagonal of a matrix

2006-10-03 Thread Marc Schwartz (via MN)
On Tue, 2006-10-03 at 17:03 -0400, Duncan Murdoch wrote: On 10/3/2006 4:59 PM, roger bos wrote: Dear useRs, Trying to replace the diagonal of a matrix is not working for me. I want a matrix with .6 on the diag and .4 elsewhere. The following code looks like it should work--when I

Re: [R] Barplot

2006-10-03 Thread Marc Schwartz (via MN)
(or regression) line which is not sharp like what I have now. I tried to write density in the code but it tells Error in xy.coords(x, y) : 'x' and 'y' lengths differ I appreciate any comment about these questions Thanks, Mohsen On 10/2/06, Marc Schwartz (via MN) [EMAIL PROTECTED] wrote

Re: [R] Barplot

2006-10-02 Thread Marc Schwartz (via MN)
On Mon, 2006-10-02 at 11:14 -0400, Mohsen Jafarikia wrote: Hello, I have used the following data to draw my barplot: BL LRQ 36.351.00 1.92 36.914.00 0.00 25.706.00 0.00 34.383.00 1.92 05.320.50 0.00 BL-c(36.35, 36.91, 25.70, 34.38, 05.32)

Re: [R] X-axis labels in histograms drawn by the truehist function

2006-10-02 Thread Marc Schwartz (via MN)
On Mon, 2006-10-02 at 14:58 -0400, Ravi Varadhan wrote: Hi, I had sent this email last week, but received no reply. So, I am resending it - please excuse me for the redundant email. I have a simple problem that I would appreciate getting some tips. I am using the truehist

Re: [R] index vector

2006-09-29 Thread Marc Schwartz (via MN)
On Fri, 2006-09-29 at 16:13 -0400, bertrand toupin wrote: Hi! 1st time I'm posting here. I'm beginning to learn R and I've encountered a problem that I'm unable to solve so far. I have a 20 000 x 5 matrix. In the 5th column, I have elevation. Missing value are actually put to -9. I

Re: [R] recode problem - unexplained values

2006-09-28 Thread Marc Schwartz (via MN)
On Thu, 2006-09-28 at 12:27 +1000, [EMAIL PROTECTED] wrote: I am hoping for some advice regarding the difficulties I have been having recoding variables which are contained in a csv file. Table 1 (below) shows there are two types of blanks - as reported in the first two columns. I am using

Re: [R] Evaluation of defaults in functions

2006-09-28 Thread Marc Schwartz (via MN)
On Thu, 2006-09-28 at 21:49 +0200, Ulrich Keller wrote: Hello, and sorry if this is already explained somewhere. I couldn't find anything. R (2.3.1, Windows) seems to perform some kind of lazy evaluation when evaluating defaults in function calls that, at least for me, leads to

Re: [R] help on plots

2006-09-28 Thread Marc Schwartz (via MN)
On Thu, 2006-09-28 at 23:55 +0800, zhijie zhang wrote: Dear friends, I met a problem on plotting. My dataset is : yearMHBC LHBC MHRC LURC 1993 11.75 4.50 0.43 0.46 19947.25 1.25 0.35 0.51 19958.67 2.17 0.54 0.44 1996 2.67 1.33 0.78 0.47 1997 3.42

Re: [R] a decimal aligned column

2006-09-28 Thread Marc Schwartz (via MN)
On Thu, 2006-09-28 at 12:31 -0700, BBands wrote: Hello, For numbers in the range 100 to 100,000,000 I'd like to decimal align a right-justified comma-delineated column of numbers, but I haven't been able to work out the proper format statement. format(num, justify=right, width=15,

Re: [R] Splitting a character variable into a numeric one and a character one?

2006-09-25 Thread Marc Schwartz (via MN)
On Mon, 2006-09-25 at 11:30 -0500, Marc Schwartz (via MN) wrote: On Mon, 2006-09-25 at 11:04 -0500, Frank Duan wrote: Hi All, I have a data with a variable like this: Column 1 123abc 12cd34 1e23 ... Now I want to do an operation that can split it into two variables

Re: [R] Splitting a character variable into a numeric one and a character one?

2006-09-25 Thread Marc Schwartz (via MN)
On Mon, 2006-09-25 at 11:04 -0500, Frank Duan wrote: Hi All, I have a data with a variable like this: Column 1 123abc 12cd34 1e23 ... Now I want to do an operation that can split it into two variables: Column 1Column 2 Column 3 123abc 123

Re: [R] Can't mix high level and low level plot functions.

2006-09-25 Thread Marc Schwartz (via MN)
On Mon, 2006-09-25 at 19:56 +0200, Lothar Botelho-Machado wrote: Hey R-Comunity, I'd like to print out an histogram of some experimental data and add a smooth curve of a normal distribution with an ideally generated population having the same mean and standard deviation like the

Re: [R] paste? 'cmd /c c:\\pheno\\whap --file c:\\pheno\\smri --alt 1'

2006-09-25 Thread Marc Schwartz (via MN)
On Mon, 2006-09-25 at 18:58 +0200, Boks, M.P.M. wrote: Dear R users, This command works (calling a programm -called whap- with file specifiers etc.): system('cmd /c c:\\pheno\\whap --file c:\\pheno\\smri --alt 1 --perm 500', intern=TRUE) Now I need to call it from a loop to

Re: [R] extract data from lm object and then use again?

2006-09-22 Thread Marc Schwartz (via MN)
On Fri, 2006-09-22 at 10:45 -0400, Mike Wolfgang wrote: Hi list, I want to write a general function so that it would take an lm object, extract its data element, then use the data at another R function (eg, glm). I searched R-help list, and found this would do the trick of the first part:

Re: [R] inequality with NA

2006-09-22 Thread Marc Schwartz (via MN)
On Fri, 2006-09-22 at 20:16 +0200, Mag. Ferri Leberl wrote: Dear everybody! take a-c(5,3,NA,6). if(a[1]!=NA){b-7} if(a[3]!=5){b-7} if(a[3]!=NA){b-7} if(a[3]==NA){b-7} will alltogeather return Fehler in if (a[1] != NA) { : Fehlender Wert, wo TRUE/FALSE nötig ist (or simularly).

Re: [R] proj4R library will not install

2006-09-22 Thread Marc Schwartz (via MN)
On Fri, 2006-09-22 at 17:16 -0400, Philip Bermingham wrote: I'm hoping someone can help me. I have downloaded the proj4R.zip and under my version of R (2.3.1) I install the package from local zip file. This worked great. I then type library(proj4R) to load the library and I get the error:

Re: [R] R CMD check fails at package dependencies check on Fedora Core 5, works on other systems

2006-09-20 Thread Marc Schwartz (via MN)
On Wed, 2006-09-20 at 13:20 +0200, Kurt Hornik wrote: Marc Schwartz (via MN) writes: On Tue, 2006-09-19 at 22:16 +1000, Robert King wrote: Here is another thing that might help work out what is happening. If I use --no-install, ade4 actually fails as well, in the same way as zipfR

Re: [R] Beginners manual for emacs and ess

2006-09-20 Thread Marc Schwartz (via MN)
On Wed, 2006-09-20 at 17:03 +0200, Rainer M Krug wrote: Hi I heard so much about Emacs and ESS that I decided to try it out - but I am stuck at the beginning. Is there anywhere a beginners manual for Emacs ESS to be used with R? even M-x S tells me it can't start S-Plus - obviously -

Re: [R] [Rd] Sweave processes \Sexpr in commented LaTeX source (2.3.1patched and 2.4.0)

2006-09-20 Thread Marc Schwartz (via MN)
On Wed, 2006-09-20 at 09:09 +0200, Antonio, Fabio Di Narzo wrote: Hi. 2006/9/20, Marc Schwartz [EMAIL PROTECTED]: Hi all, On FC5, using: Version 2.3.1 Patched (2006-08-06 r38829) and today's R version 2.4.0 alpha (2006-09-19 r39397) with the following .Rnw file:

Re: [R] [ROracle] error loading (undefined symbol: sqlclu)

2006-09-20 Thread Marc Schwartz (via MN)
On Wed, 2006-09-20 at 15:15 -0400, Mathieu Drapeau wrote: I have this error when I load the library ROracle: library(ROracle) Loading required package: DBI Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library

Re: [R] R CMD check fails at package dependencies check on Fedora Core 5, works on other systems

2006-09-19 Thread Marc Schwartz (via MN)
On Tue, 2006-09-19 at 22:16 +1000, Robert King wrote: Here is another thing that might help work out what is happening. If I use --no-install, ade4 actually fails as well, in the same way as zipfR. [Desktop]$ R CMD check --no-install ade4 * checking for working latex ... OK * using

Re: [R] acos(0.5) == pi/3 FALSE

2006-09-18 Thread Marc Schwartz (via MN)
On Mon, 2006-09-18 at 19:31 +0200, Iñaki Murillo Arcos wrote: Hello, I don't know if the result of acos(0.5) == pi/3 is a bug or not. It looks strange to me. Inaki Murillo Seems reasonable to me: acos(0.5) == pi/3 [1] FALSE print(acos(0.5), 20) [1] 1.0471975511965978534

Re: [R] group bunch of lines in a data.frame, an additional requirement

2006-09-13 Thread Marc Schwartz (via MN)
Try something like this: # Initial data frame DF V1 V2 V3 V4 1 A 1.0 200 ID1 2 A 3.0 800 ID1 3 A 2.0 200 ID1 4 B 0.5 20 ID2 5 B 0.9 50 ID2 6 C 5.0 70 ID1 # Now do the aggregation to get the means DF.1 - aggregate(DF[, 2:3], list(V1 = DF$V1), mean) DF.1 V1 V2 V3 1 A 2.0

Re: [R] coerce matrix to number

2006-09-12 Thread Marc Schwartz (via MN)
On Tue, 2006-09-12 at 18:42 +0200, Simone Gabbriellini wrote: Dear List, how can I coerce a matrix like this [,1] [,2] [,3] [,4] [,5] [,6] [1,] 0 1 1 0 0 0 [2,] 1 0 1 0 0 0 [3,] 1 1 0 0 0 0 [4,] 0 0 0 0 1 0 [5,] 0 0 0 1 0 0 [6,] 0 0 0 0 0 0 to be

Re: [R] barplot: different colors for the bar and the strips

2006-09-07 Thread Marc Schwartz (via MN)
On Thu, 2006-09-07 at 12:14 -0500, Hao Chen wrote: Hello Marc Schwartz On Thu, Sep 07, 2006 at 07:54:05AM -0500, Marc Schwartz wrote: On Thu, 2006-09-07 at 06:18 -0500, Hao Chen wrote: Hi, I am using barplot and would like to know if it is possible to have bars filled with one

Re: [R] [OT] Important stat dates

2006-09-07 Thread Marc Schwartz (via MN)
On Thu, 2006-09-07 at 11:57 -0500, Erin Hodgess wrote: Dear R People: Way Off Topic: Is anyone aware of a website that contains important dates in statistics history, please? Maybe a sort of This Day in Statistics, please? I thought that my students might get a kick out of that.

Re: [R] installing the x86_64 R Binary on Fedora Core 5

2006-08-24 Thread Marc Schwartz (via MN)
On Thu, 2006-08-24 at 10:53 -0400, roger bos wrote: I am looking for help install the x86_64 R Binary onto my FC5 machine. At the risk of subjecting myself to tons of criticism, I must confess that I don't know anything about Linux and I have never compiled R from source. Therefore, I choose

Re: [R] installing the x86_64 R Binary on Fedora Core 5

2006-08-24 Thread Marc Schwartz (via MN)
Roger, The Windows packages will not run on Linux. You will need to install them using the Linux versions (.tar.gz files) of the CRAN packages. You can copy them from a CRAN mirror to your USB drive and then install them locally using R CMD INSTALL PackageName.tar.gz This will again need

Re: [R] generating an expression for a formula automatically

2006-08-24 Thread Marc Schwartz (via MN)
On Thu, 2006-08-24 at 14:01 -0700, Maria Montez wrote: Hi! I would like to be able to create formulas automatically. For example, I want to be able to create a function that takes on two values: resp and x, and then creates the proper formula to regress resp on x. My code: fit.main -

Re: [R] Escaping ' character

2006-08-22 Thread Marc Schwartz (via MN)
On Tue, 2006-08-22 at 07:32 -0700, Srinivas Iyyer wrote: Dear marc: thank you for your tip. cat(x.new, \n) 3\',5\'-cyclic-nucleotide phosphodiesterase activity here cat is printing on screen. how can I direct the output to an object. I cannot do: y - cat(x.new, \n) is

Re: [R] Escaping ' character

2006-08-21 Thread Marc Schwartz (via MN)
On Mon, 2006-08-21 at 13:43 -0700, Srinivas Iyyer wrote: Dear all: I have a character object x with ' (single-quote) character. x - c('hydrolase activity,actin binding,3',5'-cyclic-nucleotide phosphodiesterase activity) I want to write a function that will identify ' and replaces

Re: [R] as.data.frame(cbind()) transforming numeric to factor?

2006-08-18 Thread Marc Schwartz (via MN)
On Fri, 2006-08-18 at 10:41 -0400, Tom Boonen wrote: Dear List, why does as.data.frame(cbind()) transform numeric variables to factors, once one of the other variablesused is a character vector? # x.1 - rnorm(10) x.2 - c(rep(Test,10)) Foo - as.data.frame(cbind(x.1)) is.factor(Foo$x.1)

Re: [R] apply least angle regression to generalized linear models

2006-08-18 Thread Marc Schwartz (via MN)
On Fri, 2006-08-18 at 11:17 -0400, Mike Wolfgang wrote: Hello list, I've been searching around trying to find whether somebody has written such a package of least angle regression on generalized linear models, like what Lasso2 package does. The extension to generalized linear models is

Re: [R] apply least angle regression to generalized linear models

2006-08-18 Thread Marc Schwartz (via MN)
Andy, Upon further review of the documentation for lars, you are correct. Thanks for the pointer to the work by Tim et al. Regards, Marc On Fri, 2006-08-18 at 12:48 -0400, Liaw, Andy wrote: I believe `lars' does not currently fit glms. For that you'll probably need to look at `glar', at:

Re: [R] list of lists to a data.frame

2006-08-18 Thread Marc Schwartz (via MN)
On Fri, 2006-08-18 at 16:44 -0400, Rajarshi Guha wrote: Hi, I have a situation where I have a list of lists. Each list can contain elements of different types (but each one will be a scalar) say of double, integer or character. However the elements of each list are always in the same order:

Re: [R] Boxplot Help: Re-ordering the x-axis

2006-08-17 Thread Marc Schwartz (via MN)
On Thu, 2006-08-17 at 11:46 -0700, Pamela Allen wrote: I am having a problem using boxlpot with my data. I have my data arranged in a data table, and two of my columns are mass and month. I am trying to plot the mass of my study animals by month, thus I would like to have it in the order of

Re: [R] separate row averages for different parts of an array

2006-08-16 Thread Marc Schwartz (via MN)
On Wed, 2006-08-16 at 11:36 -0600, Spencer Jones wrote: I have an array with 44800 columns and 24 rows I would like to compute the row average for the array 100 columns at a time, so I would like to end up with an array of 24 rows x 448 columns. I have tried using apply(dataset, 1, function(x)

Re: [R] read.csv issue

2006-08-16 Thread Marc Schwartz (via MN)
On Wed, 2006-08-16 at 14:43 -0400, Doran, Harold wrote: I'm trying to read in some data from a .csv format and have come across the following issue. Here is a simple example for replication # A sample .csv format schid,sch_name 331-802-7081,School One 464-551-7357,School Two

Re: [R] How to show classes of all columns of a data frame?

2006-08-15 Thread Marc Schwartz (via MN)
On Tue, 2006-08-15 at 13:10 -0400, T Mu wrote: Hi all, Suppose I have a data frame myDF, col A is factor, col B is numeric, col C is character. I can get their classes by class(myDF$A) but is there a quick way to show what classes of all columns are? Thank you. Tian Depending upon

Re: [R] Making R script to run in a console

2006-08-14 Thread Marc Schwartz (via MN)
On Mon, 2006-08-14 at 14:12 -0300, Ronaldo Reis-Jr. wrote: Hi, is possible to make a R script to run under a console without open the R environment? Something like this example.R #!/usr/bin/R function(name=Put here your name) { print(name) } In a console I make ./example.R

Re: [R] Sampling from a Matrix

2006-08-09 Thread Marc Schwartz (via MN)
On Tue, 2006-08-08 at 14:10 -0400, Liaw, Andy wrote: From: Marc Schwartz On Fri, 2006-08-04 at 12:46 -0400, Daniel Gerlanc wrote: Hello all, Consider the following problem: There is a matrix of probabilities: set.seed(1) probs - array(abs(rnorm(25, sd = 0.33)),

Re: [R] parameter yaxs / function hist (graphics)

2006-08-09 Thread Marc Schwartz (via MN)
Paulo, Try the following: x - rnorm(100) par(xaxs = i) par(yaxs = i) hist(x, breaks = seq(-4, 4, 0.5), ylim = c(0, 40), xlim = c(-4, 4)) box() The problem is that graphics:::plot.histogram() is coded in such a way that the use of 'xaxs' and 'yaxs' are ineffectual, as they are not

Re: [R] categorical data

2006-08-09 Thread Marc Schwartz (via MN)
On Wed, 2006-08-09 at 18:07 +0200, Christian Oswald wrote: Dear List, I neeed a grouped list with two sort of categorical data. I have a data .frame like this. yearcat.b c 1 2006a1 125 212 2 2006a2 256 212 3 2005a1 14

Re: [R] Netiquette, was Re: ... gfortran and gcc...

2006-08-08 Thread Marc Schwartz (via MN)
[Re-sending to the list only for archiving, as my original reply had too many recipients and I cancelled it.] 1. One need not be subscribed to the list to be able to post. Thus, indeed, a poster may not see all postings. 2. On the relatively rare occasion (thanks to Martin) where the server

Re: [R] Retain only those records from a dataframe that exist in another dataframe

2006-08-07 Thread Marc Schwartz (via MN)
On Mon, 2006-08-07 at 14:05 -0600, Mark Na wrote: Dear R community, I have two dataframes first and second which share a unique identifier. I wish to make a new dataframe third retaining only the rows in first which also occur in second. I have tried using merge but can't seem to figure

Re: [R] expression() - Superscript in y-axis, keeping line break in string

2006-08-04 Thread Marc Schwartz (via MN)
On Fri, 2006-08-04 at 09:47 -0600, Andrew Kniss wrote: I've tried several different ways to accomplish this, but as yet to no avail. My y-axis for a plot has a rather long label, and thus I have been using /n to break it into two lines. However, to make it technically correct for

Re: [R] expression() - Superscript in y-axis, keeping line break in string

2006-08-04 Thread Marc Schwartz (via MN)
Actually Gabor, using your solution with 'atop', which I had not considered, it will work with base graphics: par(oma = c(0, 0, 2, 0), mar = c(5, 6, 0.25, 2), lheight = 1) plot(1:10, ylab = expression(atop( ^14*C*-glyphosate line1, line2))) HTH, Marc On

Re: [R] Simulate an Overdispersed(extra-variance poisson process)?

2006-08-04 Thread Marc Schwartz (via MN)
On Fri, 2006-08-04 at 10:33 -0600, Spencer Jones wrote: Is there a function in R comparable to rpois that can simulate random variables from an overdispersed poisson distribution? If there is not a function any ideas/references on how to program one? Take a look at ?rnbinom or

Re: [R] Sampling from a Matrix

2006-08-04 Thread Marc Schwartz (via MN)
On Fri, 2006-08-04 at 12:46 -0400, Daniel Gerlanc wrote: Hello all, Consider the following problem: There is a matrix of probabilities: set.seed(1) probs - array(abs(rnorm(25, sd = 0.33)), dim = c(5,5), dimnames = list(1:5, letters[1:5])) probs a b c d

Re: [R] expression() - Superscript in y-axis, keeping line break in string

2006-08-04 Thread Marc Schwartz (via MN)
On Fri, 2006-08-04 at 19:44 +0100, Prof Brian Ripley wrote: On Fri, 4 Aug 2006, Marc Schwartz (via MN) wrote: On Fri, 2006-08-04 at 09:47 -0600, Andrew Kniss wrote: I've tried several different ways to accomplish this, but as yet to no avail. My y-axis for a plot has a rather long

Re: [R] Vectorizing a for loop

2006-08-03 Thread Marc Schwartz (via MN)
On Thu, 2006-08-03 at 10:10 -0400, Daniel Gerlanc wrote: Hello all, Consider the following problem: There are two vectors: rows - c(1, 2, 3, 4, 5) columns - c(10, 11, 12, 13, 14) I want to create a matrix with dimensions length(rows) x length(columns): res - matrix(nrow =

Re: [R] bullseye or polar display of circular data

2006-08-03 Thread Marc Schwartz (via MN)
On Thu, 2006-08-03 at 07:46 -0700, Michael Jerosch-Herold wrote: I have data for several rings of a left heart chamber, and which I would like to display in concentric rings, with color-encoding of the values. Each ring corresponds to one slice through the heart, and the rings correspond to

Re: [R] How to access a column by its label?

2006-08-03 Thread Marc Schwartz (via MN)
On Thu, 2006-08-03 at 14:44 -0400, Neil McLeod wrote: Hi all, Is there any way to access a column of a data frame by its label (title) rather than its column index? For example, I'd like to be able to select animals[,weight] rather than animals[,3], if the third column of the animals data

Re: [R] Extracting a row number from a matrix

2006-08-01 Thread Marc Schwartz (via MN)
On Tue, 2006-08-01 at 07:03 -0700, Kartik Pappu wrote: Hi all, I have a matrix with each column containing a large number of integers (0 and above). in each column beyond a certain row (say row 120 in column 1, row 134 in column 2, 142 in column 3...) there are only 0's. I want to find,

Re: [R] greek letters, text, and values in labels

2006-07-25 Thread Marc Schwartz (via MN)
On Tue, 2006-07-25 at 13:12 -0700, Adrian Dragulescu wrote: Hello, I want to have a title that will look something like: Results for \theta=2.1, given that I have a variable theta=2.1, and \theta should show on the screen like the greek letter. I've tried a lot of things: theta - 2.1

Re: [R] unique, but keep LAST occurence

2006-07-24 Thread Marc Schwartz (via MN)
On Mon, 2006-07-24 at 12:00 -0500, [EMAIL PROTECTED] wrote: ?unique says Value: An object of the same type of 'x'. but if an element is equal to one with a smaller index, it is removed. However, I need to keep the one with the LARGEST index. Can someone please show me the

Re: [R] Reading data with blank elements

2006-07-21 Thread Marc Schwartz (via MN)
On Fri, 2006-07-21 at 05:43 -0700, Ahamarshan jn wrote: Hi, I have a dataset saved in *.csv format, that contains 13 columns (the first column being the title name and the rest experiments) and about 2500 rows. Not all columns in the row have data in it i.e for eg

Re: [R] connection to X11 problem

2006-07-21 Thread Marc Schwartz (via MN)
On Fri, 2006-07-21 at 11:47 -0700, Paquet, Agnes wrote: Dear List, I am a new Mac user and I am having problem generating png (or jpeg) using the GUI version of R. I installed R-2.3.1.dmg (custom install with everything selected) and X11User.pkg but I am still getting the following X11

Re: [R] character to vector

2006-07-21 Thread Marc Schwartz (via MN)
On Fri, 2006-07-21 at 15:15 -0500, [EMAIL PROTECTED] wrote: I have an object of mode character that contains a long sequence of letters. How can I convert this object into a vector with each element of the vector containing a single letter? Essentially, I want to break the long string of

Re: [R] R-help in a newsgroup

2006-07-18 Thread Marc Schwartz (via MN)
On Tue, 2006-07-18 at 11:30 -0700, Darren Weber wrote: Hi, I find a lot of the R-help email traffic overloads my inbox. My IT managers are not really happy for me to be subscribed to several high-traffic email lists. I don't want to lose my contact with the R-help emails, so I'm having to

Re: [R] String manipulation and formatting

2006-07-17 Thread Marc Schwartz (via MN)
On Mon, 2006-07-17 at 16:07 +0200, Bashir Saghir (Aztek Global) wrote: I'm trying to write a simple function that does the following: [command] xify(5.2) [output] XXX.XX [command] xify(3) [output] XXX Any simple solutions (without using python/perl/unix script/...)? Thanks,

Re: [R] Generate object names from variables

2006-07-14 Thread Marc Schwartz (via MN)
On Fri, 2006-07-14 at 16:57 +0200, Georg Otto wrote: Hi, I want to generate object names out of variables in a sort of variable substitution. first i generate some vectors and an empty list: vector.a-c(a,b) vector.b-c(c,d) vector.c-c(e,f) vectors-c(vector.a, vector.b, vector.c)

Re: [R] SAS to R translator for particular procedures

2006-07-14 Thread Marc Schwartz (via MN)
On Fri, 2006-07-14 at 18:35 +0200, Mehmet Somel wrote: Dear /Bill Paterson, while trying to find a way to convert SAS code into R, I came across your one time e-mail message (http://www.ens.gu.edu.au/robertk/R/help/99b/0908.html). I'd appreciate to learn if anything came out of this, or

Re: [R] Keep value lables with data frame manipulation

2006-07-12 Thread Marc Schwartz (via MN)
On Wed, 2006-07-12 at 17:41 +0100, Jol, Arne wrote: Dear R, I import data from spss into a R data.frame. On this rawdata I do some data processing (selection of observations, normalization, recoding of variables etc..). The result is stored in a new data.frame, however, in this new

Re: [R] replace values in data frame

2006-07-07 Thread Marc Schwartz (via MN)
On Fri, 2006-07-07 at 11:20 -0400, Wade Wall wrote: Hi all, I have a three columned list that I have imported into R. The first column is a plot (ex. Plot1), the second is a species name (ex ACERRUB) and the third a numeric value. I want to replace some of the second column names with

Re: [R] How to change the type of segments ends?

2006-07-07 Thread Marc Schwartz (via MN)
On Fri, 2006-07-07 at 11:47 -0400, Lu, Jiang Jane wrote: Hi, I am trying to plot odds ratios and the corresponding confidence intervals in horizontal segments. It would be ideal if the confidence interval segment can be drawn with little vertical bars at both ends. I have tried very hard to

Re: [R] replace values in data frame

2006-07-07 Thread Marc Schwartz (via MN)
Thanks for re-posting onlist. My offlist reply: The 'list' argument, as per ?replace, needs to be a vector of one or more indices into another vector, generally the source vector argument 'x', not the actual values that you want to replace. 'list' can either be explicit integers as the indices,

Re: [R] replace values in data frame

2006-07-07 Thread Marc Schwartz (via MN)
Wade, Given that you appear to have multiple search and replace items to deal with, here is a possible loop based Global Search and Replace solution: gsr - function(Source, Search, Replace) { if (length(Search) != length(Replace)) stop(Search and Replace Must Have Equal Number of Items\n)

Re: [R] probably need to se sapply but i can't get it

2006-06-26 Thread Marc Schwartz (via MN)
On Mon, 2006-06-26 at 12:40 -0500, [EMAIL PROTECTED] wrote: Hi : I think I need to use sapply but I can't figure this out. Suppose I have two vectors : tempa ( 4, 6,10 ) and tempb ( 11,23 ,39 ) I want a function that returns 4:11,6:23 and 10:39 as vectors. I tried :

Re: [R] columnwise multiplication?

2006-06-23 Thread Marc Schwartz (via MN)
On Fri, 2006-06-23 at 11:53 -0400, Mu Tian wrote: Hi all, I'd like to do a multiplication between 2 matrices buy only want resulsts of cloumn 1 * column 1, column 2 * column 2 and so on. Now I do C - diag(t(A) %*% B) Is there a bulit in way to do this? Thank you. You just want:

Re: [R] PowerPoint

2006-06-23 Thread Marc Schwartz (via MN)
Has anyone tried this with OO.org's Impress or Writer on Windows to see if the same behavior occurs? My recollection from prior experience on Windows (it's been a while) is that a subtle resize takes place when pasting/importing graphics into the aforementioned apps. You can right click on the

Re: [R] PowerPoint

2006-06-23 Thread Marc Schwartz (via MN)
On Fri, 2006-06-23 at 18:16 +0200, Philipp Pagel wrote: On Fri, Jun 23, 2006 at 09:21:37AM -0400, Gabor Grothendieck wrote: Note that jpg, bmp and png are in less desirable bit mapped formats whereas eps is in a more desirable vector format (magnification and shrinking does not involve loss

Re: [R] Producing png plot in batch mode

2006-06-23 Thread Marc Schwartz (via MN)
On Fri, 2006-06-23 at 17:23 +0100, Vittorio wrote: I have set up an R procedure that is launched every three hours by crontab in a unix server. Crontab runs at regular intervals the following line: R CMD BATH myprog.R myprog.R (which by the way uses R2HTML) should create an updated png

Re: [R] PowerPoint - eps not suitable

2006-06-23 Thread Marc Schwartz (via MN)
On Fri, 2006-06-23 at 14:02 -0400, Michael H. Prager wrote: Previous posters have argued for EPS files as a desirable transfer format for quality reasons. This is of course true when the output is through a Postscript device. However, the original poster is making presentations with

Re: [R] useR! Thanks

2006-06-22 Thread Marc Schwartz (via MN)
On Thu, 2006-06-22 at 15:40 -0500, Jeffrey Horner wrote: Achim Zeileis wrote: [...] The plan is to provide the original presentation slides of the panelists and a video of the whole panel disc, and probably some minutes and/or further information. Did you happen to video Ivan Mizera's

Re: [R] help on ploting various lines

2006-06-21 Thread Marc Schwartz (via MN)
On Wed, 2006-06-21 at 12:22 -0400, Baoqiang Cao wrote: Dear All, I tried to plot a variety of lines(curves) on same figure. What I did is, plot(x=x1,y=y1) lines(x=x2,y=y2) lines(x=x3,y=y3) ... In my data, the maximum of y1 is much smaller than those maximums of other y vectors. So, in

Re: [R] help on ploting various lines

2006-06-21 Thread Marc Schwartz (via MN)
On Wed, 2006-06-21 at 11:55 -0500, Marc Schwartz (via MN) wrote: On Wed, 2006-06-21 at 12:22 -0400, Baoqiang Cao wrote: Dear All, I tried to plot a variety of lines(curves) on same figure. What I did is, plot(x=x1,y=y1) lines(x=x2,y=y2) lines(x=x3,y=y3) ... In my data

Re: [R] How add degree character in axis?

2006-06-09 Thread Marc Schwartz (via MN)
On Fri, 2006-06-09 at 11:01 +, fernando espindola wrote: Hi user R, I am try to put degree character in axis x, but don't make this. I have the next code: plot(mot[,5], time1,xlim=c(-45,-10),type=l,yaxt=n,ylab=,col=1,lwd=2,xlab=,xaxt=n) The range of value in axis-x is -45 to

Re: [R] Rotate numbers on the Y axis on a multiple Boxplot chart

2006-06-08 Thread Marc Schwartz (via MN)
On Thu, 2006-06-08 at 15:44 +0100, d d [EMAIL PROTECTED] ac uk wrote: Hello All, I am trying to format a box plot chart for a report so it matches other charts I have created in other software programs. My problem is that I need to rotate the values on the Y axis by 45 degrees, I have

Re: [R] multiple data sets on one plot

2006-06-07 Thread Marc Schwartz (via MN)
On Wed, 2006-06-07 at 10:30 -0500, Mark L Sessing wrote: Hello, I am learning how to use R, and I cannot figure out how to plot more than one data set on a single plot. Can you help me out? Cheers, Mark It depends upon the type of plot (scatter, lines, bar, etc.) and whether or not you

Re: [R] how to do multiple comparison in the nonparametric statistical analysis?

2006-06-07 Thread Marc Schwartz (via MN)
On Thu, 2006-06-08 at 00:10 +0800, zhijie zhang wrote: Dear Rusers, As we all know , there are many methods to do multiple comparison in the parametric statistical analysis, But i can't find some in nonparametric statistical analysis. Could anybody give some suggestions? Have you looked at

Re: [R] Strange behaviour of cbind

2006-06-06 Thread Marc Schwartz (via MN)
On Tue, 2006-06-06 at 13:44 -0700, Dirk Vandekerckhove wrote: Hi, Is this intended behaviour of cbind? a-c(0,1,2,3) a [1] 0 1 2 3 a-as.ordered(a) a [1] 0 1 2 3 Levels: 0 1 2 3 a-a[a!=0] #remove the zero from a a [1] 1 2 3 Levels: 0 1 2 3 cbind(a) a [1,] 2

Re: [R] simple index question

2006-06-01 Thread Marc Schwartz (via MN)
On Thu, 2006-06-01 at 11:06 -0400, Mu Tian wrote: I want to get index number of 0s, like x - c(1, 2, 0, 3, 0, 4) I want an output of 3, 5 Thank you. See ?which which(x == 0) [1] 3 5 HTH, Marc Schwartz __ R-help@stat.math.ethz.ch

Re: [R] merging

2006-05-30 Thread Marc Schwartz (via MN)
On Tue, 2006-05-30 at 19:08 +0100, Gavin Simpson wrote: Dear List, Given, y - matrix(c(0,1,1,1,0,0,0,4,4), ncol = 3, byrow = TRUE) rownames(y) - c(a,b,c) colnames(y) - c(1,2,3) y y2 - y[2:3, ] rownames(y2) - c(x,z) y2 how can I stop merge(y, y2, all = TRUE, sort = FALSE)

Re: [R] merging

2006-05-30 Thread Marc Schwartz (via MN)
On Tue, 2006-05-30 at 15:38 -0500, Marc Schwartz (via MN) wrote: On Tue, 2006-05-30 at 19:08 +0100, Gavin Simpson wrote: Dear List, Given, y - matrix(c(0,1,1,1,0,0,0,4,4), ncol = 3, byrow = TRUE) rownames(y) - c(a,b,c) colnames(y) - c(1,2,3) y y2 - y[2:3, ] rownames(y2) - c

Re: [R] How to make attributes persist after indexing?

2006-05-24 Thread Marc Schwartz (via MN)
On Wed, 2006-05-24 at 17:20 +0100, Heinz Tuechler wrote: Dear All! For descriptive purposes I would like to add attributes to objects. These attributes should be kept, even if by indexing only part of the object is used. I noted that some attributes like levels and class of a factor exist

Re: [R] Regression line limited by the rage of values

2006-05-24 Thread Marc Schwartz (via MN)
On Wed, 2006-05-24 at 18:51 +0200, Andreas Svensson wrote: Hi In R, using plot(x,y) followed by abline(lm(y~x)) produces a graph with a regression line spanning the whole plot . This means that the line extends beyond the swarm of data points to the defined of default plot region.

Re: [R] Joining variables

2006-05-24 Thread Marc Schwartz (via MN)
On Wed, 2006-05-24 at 14:45 -0400, Guenther, Cameron wrote: Hello, If I have two variables that are factors or characters and I want to create a new variable that is the combination of both what function can I use to accomplish this? Ex. Var1 Var2 SA100055113

Re: [R] Regression line limited by the range of values

2006-05-24 Thread Marc Schwartz (via MN)
On Wed, 2006-05-24 at 21:53 +0200, Andreas Svensson wrote: Thankyou very much Marc for that nifty little script. When I use it on my real dataset though, the lines are fat in the middle and thinner towards the ends. I guess it's because lines draw one fitted line for each x, and if you

Re: [R] conditional replacement

2006-05-23 Thread Marc Schwartz (via MN)
On Tue, 2006-05-23 at 11:40 -0700, Sachin J wrote: Hi How can do this in R. df 48 1 35 32 80 If df 30 then replace it with 30 and else if df 60 replace it with 60. I have a large dataset so I cant afford to

Re: [R] writing 100 files

2006-05-22 Thread Marc Schwartz (via MN)
On Mon, 2006-05-22 at 16:24 +0100, Federico Calboli wrote: Hi All, I need to write as text files 1000 ish variation of the same data frame, once I permute a row. I would like to use the function write.table() to write the files, and use a loop to do it: for (i in 1:1000){ bb8[2,]

Re: [R] Subset a list

2006-05-22 Thread Marc Schwartz (via MN)
On Mon, 2006-05-22 at 17:55 -0400, Doran, Harold wrote: I have a data frame of ~200 columns and ~20,000 rows where each column consists of binary responses (0,1) and a 9 for missing data. I am interested in finding the columns for which there are fewer than 100 individuals with responses of 0.

Re: [R] make error for R-2.3.0

2006-05-19 Thread Marc Schwartz (via MN)
On Fri, 2006-05-19 at 15:37 -0400, Randall C Johnson [Contr.] wrote: Hello, I'm trying to install R on a linux machine running Red Hat 8. I ran ./configure make and get the following error. I've installed several versions of R (2.2.1 most recently) on this machine and haven't had any

Re: [R] How can you buy R?

2006-05-19 Thread Marc Schwartz (via MN)
On Fri, 2006-05-19 at 17:59 -0300, Rogerio Porto wrote: While reading the various answers, I've remembered that the juridic part can't be that so simple. If I'm not fogeting something, there are some packages in R that has a more restrictive licence than GPL. HTH, Rogerio. Any CRAN

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