On Mon, 2007-05-21 at 07:46 -0700, Waichler, Scott R wrote:
I use some computers that run older versions of Redhat Linux such as
EL3. RPMs for the current version of R are no longer provided via CRAN
for these older operating system versions. How can I compile my own RPM
for the current
On Mon, 2006-10-23 at 20:59 +0200, Alexander Geisler wrote:
Hello!
I calculate a Bayesian logistic regression with the function MCMClogit
from the package MCMCpack.
After the calculation I use the package CODA to test the model in
respect to convergence.
Is there a compatible package
On Fri, 2006-10-13 at 21:40 -0700, Marc Fischer wrote:
Folks,
I've got a box running Redhat 9 with R 1.7.1. I need the foreign
package but the one on CRAN is for the current rev of R (i.e.,
2.4). Problem is I am naive and also can't find the R-2.4.rpm
appropriate for RedHat 9. Can
On Thu, 2006-07-13 at 11:32 +0100, Oarabile Molaodi wrote:
Tried to look for package GLLMGibbs-(package for fitting mixed models by
Gibbs samppling contributed by Myles' and Clayton) in CRAN but not found
it, Does anybody know if it is still available?
thanks
Oarabile
You will find it
My guess is that even though the zoo namespace is unloaded. The S3
method as.Date.numeric is still registered, and the name space will be
reloaded whenever it is dispatched.
library(zoo)
loadedNamespaces()
[1] base graphics grDevices methods stats utils
[7] zoo
unloadNamespace(zoo)
,
As far as I know, the R RPMS provide either by Martyn Plummer et al on
CRAN, or more recently via Fedora Extras, are generally not
relocatable.
In other words, they must be installed as root into a pre-defined
location.
I checked the list archive and this had come up last year
OpenBUGS has a Griddy Gibbs sampler, written in Component Pascal
http://www.mathstat.helsinki.fi/openbugs/
The source code is not in plain text format. You will need to install
the Black Box Component Builder to read it. I hope this helps.
Martyn
On Mon, 2006-06-26 at 14:52 -0700, Elizabeth
You need to give the file name in quotes. If you do not, R will look for
an object of that name in your work space. Note that the error message
is object practice not found, not file practice.txt not found.
You might also need to give the file extension, if this is not added by
the
That certainly sounds like the behaviour you would get if you
had a .Random.seed in your work space. If you do not save your
workspace at the end of the session then the random seed will
be in exactly the same state every time you start a new R session,
and you will get identical simulations from
Quoting mark salsburg [EMAIL PROTECTED]:
I am trying to find out if R can recognize specific criteria for removing
rows (i.e. a prexisting function)
I have a matrix myMatrix that is 12000 by 20
I would like to remove rows from myMatrix that have:
-999 across all columns
-999 across all
On Wed, 2006-03-01 at 10:08 +, Luis Ridao Cruz wrote:
R-help,
I was searching the R archives for information on multiple comparisons
and found that ctest package may contain something useful for
my study. But there seems not to be such a package on CRAN.
Anything I am missing?
On Fri, 2006-02-24 at 08:48 +0100, Uwe Ligges wrote:
Gabor Grothendieck wrote:
Just source the file:
source(mywinbugsfile.R)
head(y)
... and don't forget to transpose the matrix afterwards, if this was
BUGS code.
Uwe Ligges
If this were a WinBUGS data file (or initial values
Far be it for me to tell people what they can and cannot do. Perhaps I
can rephrase myself in a less inflammatory way.
R runs from the build directory as a convenience for developers, so you
don't have to reinstall R every time you change something. But for
users, the standard mechanism make
Quoting Daniel A. Powers [EMAIL PROTECTED]:
R-help --
I built R-2.2.1 in my own directory on a sun (solaris). Now I would like
the sysadmin to move the contents to /usr/local/lib and place the binary
in /usr/local/bin. No problem. However, the RHOME variable defaults to
the directory from
it takes so long
to make RPMs available? I would be happy to help make the RPMs for el4
and el3 if such help is needed.
Because someone has to volunteer their time to create such things -
these are not automatically built by R-Core members. Martyn Plummer has
done this for as long
Many packages in Fedora Extras, including R, have been recompiled for
CentOS (a RHEL clone). You can find them here:
http://centos.karan.org/
They should be compatible with RHEL, but of course your mileage may
vary.
Martyn
On Tue, 2005-11-29 at 20:43 +, Prof Brian Ripley wrote:
You don't
On Tue, 2005-11-22 at 08:35 -0700, Brian S Cade wrote:
Having finally updated from R 1.91 to R 2.2.0 with my installation of a
new computer, I discovered that something has changed drastically about
the way code for contributed packages is stored when installed in a local
version of R. In
On Thu, 2005-10-13 at 12:19 +0200, Muhammad Subianto wrote:
Hi all,
I want to make all possible combination from dataset below:
V1 - c(0,1,2)
V2 - c(0,1)
V3 - c(0,1)
V4 - c(0,1)
V5 - c(0,1)
V6 - c(0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20)
V7 -
Dear Juan Pablo,
It is best to send package-specific queries the package maintainer (me
in this case) which you can find out by typeing library(help=coda)
The inconsistency comes from two different ways of estimating the
spectral density at frequency 0: spectrum0() adapted from Heidelberger
On Wed, 2005-08-03 at 17:00 -0400, roger bos wrote:
I am trying to calculate the weighted mean for a of 10 deciles and I
get an error:
decile - tapply(X=mat$trt1m, INDEX=mat$Rank, FUN=weighted.mean, w=mat$mcap)
Error in FUN(X[[1]], ...) : 'x' and 'w' must have the same length
All three of
Quoting Christoph Buser [EMAIL PROTECTED]:
Dear R-users
I have a problem choosing initial points for the function arms()
in the package HI
I intend to implement a Gibbs sampler and one of my conditional
distributions is nonstandard and not logconcave.
Therefore I'd like to use arms.
But
On Mon, 2005-06-20 at 08:29 -0400, bogdan romocea wrote:
Dear useRs,
I timed the same code (simulation with for loops) on the same box
(dual Xeon EM64T, 1.5 Gb RAM) under 3 OSs and was surprised by the
results:
Windows XP Pro (32-bit): Time difference of 5.97 mins
64-bit GNU/Linux
The Fedora upgrade process should normally install backward compatibility
libraries when it finds an RPM linked to a library (or library version) that
isn't in the new release. In this case compat-libf2c-32 provides libg2c on
FC4, and it should be installed on your system if you previously had R
On Mon, 2005-06-13 at 15:23 +0100, Robin Hankin wrote:
Hi
how do I extract those components of a list that satisfy a certain
requirement? If
jj - list(list(a=1,b=4:7),list(a=5,b=3:6),list(a=10,b=4:5))
I want just the components of jj that have b[1] ==4 which in this case
would be
On Wed, 2005-06-08 at 12:07 +0200, Sven C. Koehler wrote:
Hello!
I would like to overlay barplot(1:10) with a barplot(seq(1:5, each=2)),
indicating that 50% of each bar belongs to category X. How do I do this
in R?
If you pass a matrix to barplot, it will stack values from the same
column
On Wed, 2005-06-08 at 17:08 +0200, Fredrik Thuring wrote:
Hi!
Im need a function that solves the equation f(x) = 0 (i.e. the root of
the function) when f is a nonlinear function. Is there any? Ive tried nlm
and optim on the square of the function but the solution is very unstable.
Your
On Thu, 2005-05-19 at 10:09 -0400, Li, Jia wrote:
Dear All,
When I tried to install R packages I found this error:
library(survival)
Loading required package: splines
This is for your information. It is not an error message and is not
asking you to do anything (i.e. it says loading not
On Tue, 2005-04-19 at 10:19 +0200, Ralf Strobl wrote:
Dear List,
can anyone explain me this result (Windows XP, R 2.0.1):
(0.2-0.1)==0.1
[1] TRUE
(0.3-0.2)==0.1
[1] FALSE
Yes. Floating point arithmetic isn't as accurate as you think. Your
numbers have a simple representation in
On Fri, 2005-04-01 at 09:30 +0200, Martin Maechler wrote:
dream == dream home [EMAIL PROTECTED]
on Wed, 30 Mar 2005 12:27:08 -0800 writes:
dream Dear R experts, Did someone implemented French Curve
dream yet? Or can anyone point me some papers that I can
dream follow to
On Tue, 2005-03-15 at 16:13 +0100, Depire Alexandre wrote:
Hello everyone,
I would like to use R to compute some special hidden markov chain. I see that
such those models are like dynamic bayesion network.
So, I find some doc about computation of those models in R, but I don't know
how to
There was a packaging error. A new RPM version is on its way to CRAN.
Thanks.
Martyn
On Wed, 2005-02-23 at 21:35 -0500, John Sorkin wrote:
I am having problems installing R under Fedora Core 3. I installed R
using YUM
yum -install R.
The basic installation appears to have worked, I can
Quoting Jari Oksanen [EMAIL PROTECTED]:
On Thu, 2005-02-10 at 13:52 +0100, Peter Dalgaard wrote:
I M S White [EMAIL PROTECTED] writes:
Can anyone explain why with latest version of R (2.0.1) on FC3, installed
from R-2.0.1-0.fdr.2.fc3.i386.rpm, update.packages() produces the message
I am not sure that fully answers Jeff's question. If the available link
functions (even with the quasi family) are not sufficient for your
needs, then you need to make your own constructor for a family object
- which provides the necessary information to the glm engine - and use
this as the
I have split up the R RPMS for Fedora Core 3 into two subpackages - R
and R-devel. Following the usual RPM naming convention, the basic R
package is now for users, and R-devel package is for people wishing to
do program development with R. This includes installing R packages
from source
On Mon, 2004-12-13 at 23:59 +0100, Peter Dalgaard wrote:
Jonathan Baron [EMAIL PROTECTED] writes:
Fedora uses yum as well as rpm. I haven't installed an RPM in
months, except for R. Yum is great.
Actually, Martyn set up CRAN as a yum repository. I have
$ more /etc/yum.repos.d/R.repo
An RPM for R 2.0.1 on Fedora Core 3/i386 should now be available on a
CRAN mirror near you.
Unfortunately, I am temporarily unable to build RPMS for previous
versions of Fedora and Red Hat Linux due to problems with the mach
chroot system on FC3. I expect this situation will be resolved soon
On Wed, 2004-11-10 at 09:19 +0100, Martyn Plummer wrote:
On Tue, 2004-11-09 at 19:47, Jonathan Baron wrote:
On 11/09/04 20:37, Jari Oksanen wrote:
On 9 Nov 2004, at 19:44, Jonathan Baron wrote:
The RPM for Fedora Core 2 seems to work just fine on Core 3.
(The graphics window
On Tue, 2004-11-09 at 19:47, Jonathan Baron wrote:
On 11/09/04 20:37, Jari Oksanen wrote:
On 9 Nov 2004, at 19:44, Jonathan Baron wrote:
The RPM for Fedora Core 2 seems to work just fine on Core 3.
(The graphics window got smaller, but I'm sure there is a setting
for that.)
That
On Wed, 2004-09-15 at 02:19, Tamas K Papp wrote:
I am an economist who decided it's high time that I learned some
Bayesian statistics. I am following An Introduction to Modern
Bayesian Econometrics by T. Lancaster.
The book recommends using BUGS, but I wonder if there are any
alternatives
On Wed, 2004-09-15 at 20:29, Tamas K Papp wrote:
On Wed, Sep 15, 2004 at 02:21:18PM -0400, Liaw, Andy wrote:
That's more of a question for the BUGS developers. BUGS is not open source,
so whatever binary is provided, that's all you can use. If I'm not
mistaken, WinBUGS is the only version
On Sun, 2004-08-08 at 22:22, Prof Brian Ripley wrote:
On Sun, 8 Aug 2004, Marc Schwartz wrote:
On Sun, 2004-08-08 at 14:10, Dr Mike Waters wrote:
snip
Thanks for the responses guys.
I used to have RH9 installed on this machine and I found out about the
separate developer
On Mon, 2004-08-09 at 15:13, Dr Mike Waters wrote:
[SNIP]
Once all this had been sorted out, I was then left with a compilation error
which pointed to a missing dependency or similar, which was not due to
missing developer packages, but, as you and Prof Ripley correctly point out,
from the
On Wed, 2004-06-30 at 00:52, E GCP wrote:
Thanks for your replies. I do not HTML-ize my mail, but free email accounts
do that and there is not a switch to turn it off. I apologize in advance.
I installed R from the redhat package provided by Martyn Plummer. It
installed fine and without
On Tue, 2004-04-27 at 17:21, Peter Dalgaard wrote:
Jonathan Baron [EMAIL PROTECTED] writes:
The one thing I cannot figure out is that readline does not
work. It was installed, but apparently not detected. Grepping
config.site for readline gets stuff like this:
configure:21256:
From the response that I have had from the list it appears that not
many
people use the shared lib from R, and that it wouldn't make sense to
build it that way by default.
The generic answer to this kind of request is that if a feature isn't
enabled by default, then it doesn't go in the RPM.
On Fri, 2004-01-23 at 01:33, Denise wrote:
Hi everyone,
I've been looking for a function that calculates the Turnbull estimate
for left, right and interval censored data. None of the data that I am
using has exact failure times. The only function I seem to find can handle
data that has no
On Tue, 2004-01-20 at 16:58, Peter Dalgaard wrote:
Federico Calboli [EMAIL PROTECTED] writes:
Dear All,
I would like to ask why the zeroeth power of a matrix gives me a matrix
of ones rather than the identity matrix:
Because arithmetic on a matrix works element-wise. M^2 is not
On Fri, 2004-01-16 at 01:53, Erich Neuwirth wrote:
I just installed Fedora in VMWare.
Can somebopdy tell me what lines i have to put in
yum.conf
so R will be automatically integrated in the package system
and updated when a new release is available?
I don't think this is possible, yet. My
On Thu, 2003-12-11 at 11:31, [EMAIL PROTECTED] wrote:
Hi All,
I have the following text file (mytextfile.txt)
738307 527178 714456 557955
#N/A 17.42 6.22 4.73
#N/A 17.3 6.23 4.75
#N/A 17.29 6.17 4.7
#N/A 17.07 6.12 4.6
#N/A 17.27 6.19 4.7
#N/A 17.72 6.4
On Wed, 2003-12-10 at 10:34, Göran Broström wrote:
I recently ran into the following:
x - c(1,2,4,3)
lm(x ~ 1:length(x))
Error in model.frame(formula, rownames, variables, varnames, extras, extranames, :
variable lengths differ
but
lm(x ~ c(1:length(x)))
Call:
On Wed, 2003-11-05 at 22:07, Nathan Leon Pace, MD, MStat wrote:
To all:
I currently download the R binaries for Redhat 7.x Linux.
There is considerable turmoil in the vendors of Linux. Redhat
apparently is changing it's business model to paid versions.
This might motivate my department
On Tue, 2003-10-07 at 01:00, Peter Dalgaard BSA wrote:
Javier Arsuaga [EMAIL PROTECTED] writes:
I am trying to install R in Linux 8.0 and I downloaded
R-1.7.1-1.i386.rpm and did rpm -hiv R-1.7.1-1.i386.rpm
and I am getting the following message:
warning: R-1.7.1-1.i386.rpm: V3 DSA
On Wed, 2003-08-20 at 09:22, Simon Woodhead wrote:
Dear All,
Hello I'm a newbie to the list. I recently installed R on a Redhat 9.0
system, when I come to plot anything it does not bring up a graphics
window but rather stores it in a file Rplots.ps. I tried x11() but
that doesn't bring
On Wed, 2003-06-11 at 12:10, Peter Dalgaard BSA wrote:
Jonathan Baron [EMAIL PROTECTED] writes:
On 06/10/03 18:30, Morgan Hough wrote:
Sorry for the probable repeat post but I can only search the list up to
2002 (is there a better way?).
Yes, see my search page below.
I am
On Wed, 2003-06-11 at 12:10, Peter Dalgaard BSA wrote:
Jonathan Baron [EMAIL PROTECTED] writes:
On 06/10/03 18:30, Morgan Hough wrote:
Sorry for the probable repeat post but I can only search the list up to
2002 (is there a better way?).
Yes, see my search page below.
I am
On Wed, 2003-05-28 at 17:18, Roy, Supratik wrote:
I am having problems when calling supsmu in R 1.6.2 installed
on RedHat 8.0. I used the rpm provided on the R site. supsmu
seems to have not been installed by default - (i.e., as part of
the modreg package). It also does not occur as part of
On Fri, 2003-03-28 at 12:49, Meles MELES wrote:
Hi,
somebody asked me to do a Poisson regression on cancer incidence over
years to see wether if there is a descending or an ascending tendancy.
I tried with R, but it complains that the data are not integer but
floating poing data. So,
The problem in this case is that the RPM file is corrupted. Try
downloading a fresh copy from CRAN.
To check if the package has been corrupted type:
rpm -K --nosignature /mnt/cdrom/linux/8.x/R-1.6.2-1.i386.rpm
It is possible to install a gpg-signed RPM package without importing the
On Wed, 2003-02-19 at 08:18, [EMAIL PROTECTED] wrote:
...snip...
¤
¤ You need to install the readline41 package
¤ (readline41-4.1-10.ia64.rpm)
¤ which is part of the Red Hat 7.2 distribution and provides
¤ the required
¤ library.
¤
¤ Martyn
¤
¤
Thanks - Are you shure
On Mon, 2003-02-17 at 11:15, [EMAIL PROTECTED] wrote:
Dear List
I'm trying to run R on a DIGITAL Alpha / Linux RedHat 7.2
The .rpm requires libreadlin.so.4.1
RedHat 7.2 comes with libreadline.so.4.2
I installed the R-1.6.0-1.aplha.rpm with option --nodeps, since it otherwise
complained
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