Re: [R] Limiting size of pairs plots

2007-08-28 Thread Prof Brian Ripley
, Sébastien wrote: Dear R-users, I would like to add a legend at the bottom of pairs plots (it's my first use of this function). With the plot function, I usually add some additional space at the bottom when I define the size of the graphical device (using mar); grid functions then allows me

Re: [R] R Help

2007-08-28 Thread Henrique Dallazuanna
Asteman -- R version 2.4.0 (2006-10-03) Copyright (C) 2006 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You

[R] Changing tcl in boxplot

2007-08-28 Thread ilikelotsofbroccoli
How can I change the tick marks in a boxplot so that they lie on the inside of the x and y axes? In plot I have been setting tcl=0.2 but that doesn't do anything in boxplot. What am I missing? Thanks, Emily __ R-help@stat.math.ethz.ch mailing list https

Re: [R] Column naming mystery

2007-08-28 Thread Søren Højsgaard
PROTECTED] På vegne af Werner Wernersen Sendt: 27. august 2007 15:21 Til: r-help@stat.math.ethz.ch Emne: Re: [R] Column naming mystery Sorry that the problem description was not sufficient. Here is a self-contained code replicating the problem: require(doBy) x - as.data.frame(matrix(ncol=3,seq(1,12

Re: [R] Excel

2007-08-28 Thread Robert A LaBudde
, Ltd.URL: http://lcfltd.com/ 824 Timberlake Drive Tel: 757-467-0954 Virginia Beach, VA 23464-3239Fax: 757-467-2947 Vere scire est per causas scire __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch

Re: [R] FW: How to fit an linear model withou intercept

2007-08-28 Thread Eik Vettorazzi
a constant term, since the first equation of X'e = 0 gives in this case sum(e)=0. For decomposing the TSS (y'y) into ESS (b'X'Xb) and RSS (e'e), which is needed to compute R², you will need X'e=0, because then the cross-product term b'X'e vanishes. Correct me if I'm wrong. Leeds, Mark (IED) schrieb

Re: [R] validate (package Design): error message subscript out of bounds

2007-08-28 Thread Dirk Eddelbuettel
On 28 August 2007 at 08:04, Frank E Harrell Jr wrote: | Wentzel-Larsen, Tore wrote: | Thanks, | I use Design version 2.1-1 (and as provided, R 2.5.1 on Windows XP). | | Sorry I missed the latter. | | The redundancies in object names were for my own convience, as part of | a larger command

Re: [R] validate (package Design): error message subscript out of bounds

2007-08-28 Thread Frank E Harrell Jr
Wentzel-Larsen, Tore wrote: Thanks, I use Design version 2.1-1 (and as provided, R 2.5.1 on Windows XP). Sorry I missed the latter. The redundancies in object names were for my own convience, as part of a larger command file, and the validation of this univariate model was only included

Re: [R] Column naming mystery

2007-08-28 Thread Werner Wernersen
Hi, thank a lot for your answers! As other people get the correct result but I get this mysterious result with this script even after running it on a freshly started R, it must be a problem with my particular R setup. I'll try updating. Thanks for the help, now I know where I have to search

Re: [R] Forcing coefficients in lm object

2007-08-28 Thread Henrique Dallazuanna
The Netherlands [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained

Re: [R] R Help

2007-08-28 Thread Petr PIKAL
[EMAIL PROTECTED] napsal dne 28.08.2007 13:33:13: You don't have installed the akima pakage. install.packages(akima, dep=T) And wait about two months and update your R version to 2.6.0. Or update now to 2.5.1 Regards Petr -- Henrique Dallazuanna Curitiba-Paraná-Brasil 25° 25' 40

[R] Forcing coefficients in lm object

2007-08-28 Thread J.J.P.Lebrec
and Bioinformatics Leiden University Medical Center Postzone S-05-P P.O. Box 9600 2300 RC Leiden The Netherlands [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http

Re: [R] Interpreting the eigen value of a population matrix

2007-08-28 Thread Ted Harding
On 28-Aug-07 14:12:22, Marie Anouk Simard wrote: It would seem (from the headers) that Marie sent her message within a TNEF attachment, which the R-help server has duly stripped off! I would suggest thatshe re-sends her message

[R] Interpreting the eigen value of a population matrix

2007-08-28 Thread Marie Anouk Simard
__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

[R] quntile(table)?

2007-08-28 Thread Seung Jun
(index, count)) It answers correctly, but I feel it's wasteful especially when count is generally large. So, my question is, is there a way to get quantiles directly from this table (without coding at a low level)? Thanks, Seung __ R-help@stat.math.ethz.ch

Re: [R] quntile(table)?

2007-08-28 Thread roger koenker
)? Thanks, Seung __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting- guide.html and provide commented, minimal, self-contained, reproducible code

Re: [R] oddity with method definition

2007-08-28 Thread Faheem Mitha
(bar, foo) Method Definition: function (object) { print([EMAIL PROTECTED]) } Signatures: object target foo defined foo__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http

[R] Experimental Design with R

2007-08-28 Thread Marc BERVEILLER
Dear R-users, I want to know if there is a package that allows to define different experimental designs (factorial, orthogonal, taguchi) and to compare them. I don't found one in the R-web site, but it is possible I missed it! Thank you in advance Sincerely, Marc

Re: [R] oddity with method definition

2007-08-28 Thread Faheem Mitha
. Faheem.__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self

[R] logic operation on an array

2007-08-28 Thread Gang Chen
I want to check whether all the components of a vector (or an array) are 0, and if they are I will skip the later computations. Of course I can create a loop to go through all the components. However is there an R function for this purpose more efficient than looping? Thanks a lot, Gang

[R] Interpreting the eigen value of a population matrix (2nd try)

2007-08-28 Thread Anouk Simard
,] -0.31754610+0i 0.19351247+0.1625154i 0.19351247-0.1625154i -0.73460380+0.i -0.73460380+0.i [6,] -0.06705781+0i -0.00340804-0.0295753i -0.00340804+0.0295753i 0.30711075+0.13557984i 0.30711075-0.13557984i __ R-help@stat.math.ethz.ch mailing list

[R] lm.ridge fit with some dummy variables (w/o intercept)

2007-08-28 Thread Young Cho
= a) Coefficients: b c d e f 0.04232 0.32343 1.36039 -4.67399 3.29727 Thanks so much in advance! Young [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman

Re: [R] Rmpi and x86

2007-08-28 Thread Martin Morgan
Hi Edna -- I have Rmpi 0.5-3 under R 2.5.1 with LAM 7.1.2 installed on an x86_64 SuSE 10.0. I installed (as a regular user, to my own disc space) LAM and ran through some basic checks (lamboot / lamhalt, checking that I could compile the demo programs) After downloading Rmpi_0.5.3.tar.gz, I

[R] Efficient way to parse string and construct data.frame

2007-08-28 Thread yoooooo
-and-construct-data.frame-tf4342441.html#a12370234 Sent from the R help mailing list archive at Nabble.com. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting

Re: [R] Efficient way to parse string and construct data.frame

2007-08-28 Thread Henrique Dallazuanna
I'm hesitated to use that.. Thanks a lot for your great help before and this time as well!! - boy -- View this message in context: http://www.nabble.com/Efficient-way-to-parse-string-and-construct-data.frame-tf4342441.html#a12370234 Sent from the R help mailing list archive at Nabble.com

Re: [R] Experimental Design with R

2007-08-28 Thread Bert Gunter
PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Marc BERVEILLER Sent: Tuesday, August 28, 2007 6:12 AM To: r-help@stat.math.ethz.ch Subject: [R] Experimental Design with R Dear R-users, I want to know if there is a package that allows to define different experimental designs (factorial, orthogonal

Re: [R] Efficient way to parse string and construct data.frame

2007-08-28 Thread Gabor Grothendieck
that.. Thanks a lot for your great help before and this time as well!! - boy -- View this message in context: http://www.nabble.com/Efficient-way-to-parse-string-and-construct-data.frame-tf4342441.html#a12370234 Sent from the R help mailing list archive at Nabble.com

Re: [R] Forcing coefficients in lm object

2007-08-28 Thread Prof Brian Ripley
] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Brian D. Ripley, [EMAIL PROTECTED] Professor

[R] attempt at making a polygon class failed

2007-08-28 Thread Leeds, Mark \(IED\)
I was reading a presentation of Professor Peng's and typed the presentation code into R but I changed it to make plot.polygon a separate function instread of defining the function in SetMethod itself as he did. Is that the problem with the code below because plot(p) just gives me zero. Thanks

[R] Factor levels

2007-08-28 Thread Sébastien
Dear R-users, I have found this not-so-recent post in the archives - http://tolstoy.newcastle.edu.au/R/devel/00a/0291.html - while I was looking for a particular way to reorder factor levels. The question addressed by the author was to know if the read.table function could be modified

Re: [R] Rmpi and x86

2007-08-28 Thread Martin Morgan
with the --enable-shared configure option, as documented in the installation guide. (It might also mean that R was not configure with --enable-R-shlib; the message is opaque to me). I believe others on the list have only had success with specific versions of LAMMPI, so that would be the next place to look (after

Re: [R] Experimental Design with R

2007-08-28 Thread S Ellison
as such... and there seem to be no R tools targeted at process/formulation optimisation at the analysis stage. For example, there isn't a simple-to-use quadratic response surface modelling widget that allows you to drop terms quickly and easily and then find maxima on the resulting fitted surface

Re: [R] Excel

2007-08-28 Thread bogdan romocea
is formatted to show 2 decimals. Whoever doesn't pay attention gets what s/he deserves for trusting Excel in the first place. -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of David Scott Sent: Monday, August 27, 2007 10:11 PM To: r-help@stat.math.ethz.ch

[R] data formatting: from rows to columns

2007-08-28 Thread Federico Calboli
Hi All, I have some data I need to write as a file from R to use in a different program. My data comes as a numeric matrix of n rows and 2 colums, I need to transform each row as a two rows 1 col output, and separate the output of each row with a blanck line. Foe instance I need to go from

Re: [R] Factor levels

2007-08-28 Thread Gabor Grothendieck
A 20 B 30 C 40 A DF - read.table(textConnection(Input), header = TRUE, colClasses = c(numeric, my.levels)) str(DF) # or DF - read.table(textConnection(Input), header = TRUE, colClasses = list(Fld2 = my.levels)) str(DF) On 8/28/07, Sébastien [EMAIL PROTECTED] wrote: Dear R-users, I have found

Re: [R] data formatting: from rows to columns

2007-08-28 Thread James W. MacDonald
Hi Federico, Federico Calboli wrote: Hi All, I have some data I need to write as a file from R to use in a different program. My data comes as a numeric matrix of n rows and 2 colums, I need to transform each row as a two rows 1 col output, and separate the output of each row

[R] Interpreting the eigen value of a population matrix (2nd try)

2007-08-28 Thread Anouk Simard
,] -0.31754610+0i 0.19351247+0.1625154i 0.19351247-0.1625154i -0.73460380+0.i -0.73460380+0.i [6,] -0.06705781+0i -0.00340804-0.0295753i -0.00340804+0.0295753i 0.30711075+0.13557984i 0.30711075-0.13557984i __ R-help@stat.math.ethz.ch mailing list

[R] Variance explained by cluster analysis

2007-08-28 Thread jiho
/ __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] logic operation on an array

2007-08-28 Thread Charles C. Berry
create a loop to go through all the components. However is there an R function for this purpose more efficient than looping? Thanks a lot, Gang __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] Rmpi and x86

2007-08-28 Thread Prof Brian Ripley
means that your lam was not built with the --enable-shared configure option, as documented in the installation guide. (It might also mean that R was not configure with --enable-R-shlib; the message is opaque to me). The line above is /usr/lib64/gcc/x86_64-suse-linux/4.1.0/../../../../lib64

Re: [R] ordered factors in data.frame

2007-08-28 Thread Greg Snow
From: Birgit Lemcke [mailto:[EMAIL PROTECTED] Sent: Friday, August 24, 2007 2:13 AM To: Greg Snow Cc: R Hilfe Subject: Re: [R] ordered factors in data.frame Thanks a lot Greg for your help

[R] RUnit and tracing errors

2007-08-28 Thread Ken Williams
Hi, What's a good way to quickly determine the location of a failure in my RUnit test suite? For instance, if I do the following: == library(RUnit) runTestSuite( defineTestSuite(MyTests, src/r, testFuncRegexp=metrics) ) Executing test function

Re: [R] Forcing coefficients in lm object

2007-08-28 Thread Greg Snow
PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of [EMAIL PROTECTED] Sent: Tuesday, August 28, 2007 7:33 AM To: r-help@stat.math.ethz.ch Subject: [R] Forcing coefficients in lm object Dear all, I would like to use predict.lm() with an existing lm object but with new arbitrary

Re: [R] quntile(table)?

2007-08-28 Thread Greg Snow
, August 28, 2007 8:23 AM To: r-help@stat.math.ethz.ch Subject: [R] quntile(table)? Hi, I have data in the following form: index count -7 32 19382 22192 7 190 11 201 I'd like to get quantiles from the data. I thought about something like

[R] The l1ce function in lasso2: The bound and absolute.t parameters.

2007-08-28 Thread Søren Højsgaard
__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] Excel

2007-08-28 Thread Rolf Turner
## Attention:\ This e-mail message is privileged and confidenti...{{dropped}} __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting

[R] help with aggregate(): tables of means for terms in an mlm

2007-08-28 Thread Michael Friendly
AT yorku DOT ca Professor, Psychology Dept. York University Voice: 416 736-5115 x66249 Fax: 416 736-5814 4700 Keele Streethttp://www.math.yorku.ca/SCS/friendly.html Toronto, ONT M3J 1P3 CANADA __ R-help@stat.math.ethz.ch mailing list https

Re: [R] Factor levels

2007-08-28 Thread Sébastien
any way to bring flexibility to your method ? Because, it looks to me as, at this stage, I have to i) know the order of my levels before I read the table and ii) create one class per factor. My problem is that I am not really working on a specific dataset. My goal is to develop R scripts capable

Re: [R] Factor levels

2007-08-28 Thread Gabor Grothendieck
read the table and ii) create one class per factor. My problem is that I am not really working on a specific dataset. My goal is to develop R scripts capable of handling datasets which have various contents but close structures. So, I really need to minimize the quantity of user-specific code

[R] data manipulation help

2007-08-28 Thread Zheng Lu
__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] Factor levels

2007-08-28 Thread Sébastien
,replace=T),c=sample(letters[1:26], 20, replace = T)) mydata a b c 1 1 176 w 2 2 141 k 3 3 172 r 4 4 182 s 5 5 123 k 6 6 153 p 7 7 176 l 8 8 170 u 9 9 140 z 10 10 194 s 11 11 164 j 12 12 100 j 13 13 127 x 14 14 137 r 15 15 198 d 16 16 173 j 17 17 113 x 18 18 144 w 19 19 198 q

Re: [R] data manipulation help

2007-08-28 Thread Leeds, Mark \(IED\)
Lu Sent: Tuesday, August 28, 2007 5:00 PM To: r-help@stat.math.ethz.ch Subject: [R] data manipulation help Dear All: I have a dataset like A=c(0,12,34,5,6,0,4,5,6,0,12,3,4,8,7,0,4,3,5,0,...),I want to add a column to this dataset, it must be in B=c(1,1,1,1,1,2,2,2,2,3,3,3,3,3,3,4,4,4,4,5

Re: [R] data manipulation help

2007-08-28 Thread Charles C. Berry
. Do you want B - cumsum( A == 0 ) ?? Please use spaces and newlines to make your code more readable! Zheng __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http

Re: [R] Factor levels

2007-08-28 Thread Gabor Grothendieck
Its the same principle. Just change the function to be suitable. This one arranges the levels according to the input: library(methods) setClass(my.factor) setAs(character, my.factor, function(from) factor(from, levels = unique(from))) Input - a b c 1 1 176 w 2 2 141 k 3 3 172 r 4 4

Re: [R] Factor levels

2007-08-28 Thread Peter Alspach
Sebastain Does the following work for you? seb - read.table(file='clipboard', header=T) seb$c [1] w k r s k p l u z s j j x r d j x w q f Levels: d f j k l p q r s u w x z seb$c - factor(seb$c, levels=unique(seb$c)) seb$c [1] w k r s k p l u z s j j x r d j x w q f Levels: w k r s p l u z j x

[R] Nodes edges with similarity matrix

2007-08-28 Thread H. Paul Benton
__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] Factor levels

2007-08-28 Thread Sébastien
Peter, Gabor: thanks to both of you. This 'unique' function is what I was looking for ! Peter Alspach a écrit : Sebastain Does the following work for you? seb - read.table(file='clipboard', header=T) seb$c [1] w k r s k p l u z s j j x r d j x w q f Levels: d f j k l p q r s u w x z

[R] How to find the likelihood function?

2007-08-28 Thread francogrex
Hi, I am writing a BRugs code and I need to specify the likelihood for the gamma distribution and I am specifying it as the pdf: (pow(b1,a1)/(exp(loggam(a1)))*(exp(-b1*lambda[i]))*pow(lambda[i],(a1-1))) But it is not accepting it although I know that I could use the pdf in R to estimate

[R] alternate methods to perform a calculation

2007-08-28 Thread dxc13
-to-perform-a-calculation-tf4344469.html#a12376906 Sent from the R help mailing list archive at Nabble.com. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org

[R] how to calculate mean into a list

2007-08-28 Thread Weiwei Shi
__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] Nodes edges with similarity matrix

2007-08-28 Thread Gabor Csardi
any starter code :D jj. If I've read something wrong or misunderstood my apologies. cheers, Paul -- Research Technician Mass Spectrometry o The / o Scripps \ o Research / o Institute __ R-help@stat.math.ethz.ch

Re: [R] data formatting: from rows to columns

2007-08-28 Thread jim holtman
='', file='tempxx.txt') On 8/28/07, Federico Calboli [EMAIL PROTECTED] wrote: Hi All, I have some data I need to write as a file from R to use in a different program. My data comes as a numeric matrix of n rows and 2 colums, I need to transform each row as a two rows 1 col output

[R] data formatting: from rows to columns

2007-08-28 Thread Duncan Mackay
Department of Agronomy and Soil Science University of New England Armidale NSW 2351 Email: [EMAIL PROTECTED] Ph 02 67729794 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R

Re: [R] alternate methods to perform a calculation

2007-08-28 Thread jim holtman
(x$x2-xk$xk2[j]) } Is there a way to do the above calculation without use of a FOR loop? Thank you Derek -- View this message in context: http://www.nabble.com/alternate-methods-to-perform-a-calculation-tf4344469.html#a12376906 Sent from the R help mailing list archive at Nabble.com

[R] Recoding multiple columns consistently

2007-08-28 Thread Ron Crump
values (may be strings or non-sequential integers) identifying levels (possibly with repeated occurences), how can I recode them to be sequential from 1 to n? I can solve both problems in fortran, so could use loops to do it in R, but feel there should be quicker, more elegant, more R solution

Re: [R] how to calculate mean into a list

2007-08-28 Thread jim holtman
GeneGO, Inc. Did you always know? No, I did not. But I believed... ---Matrix III __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html

[R] extracting dataset with average imputed values from aregImpute()

2007-08-28 Thread Jessica Z
extracting dataset with average imputed values from aregImpute() Dear all: after many trials, i am still quite lost on how to exact a dataset with average imputed values after running aregImpute() take the eg in the aregImpute(Hmisc) documentation(-- which also appeared in our R-archive

Re: [R] subscript out of bounds Error in predict.naivebayes

2007-08-28 Thread Stephen Weigand
On 8/22/07, Polly He [EMAIL PROTECTED] wrote: I'm trying to fit a naive Bayes model and predict on a new data set using the functions naivebayes and predict (package = e1071). R version 2.5.1 on a Linux machine My data set looks like this. class is the response and k1 - k3

Re: [R] Nodes edges with similarity matrix

2007-08-28 Thread Seth Falcon
Research Center BioC: http://bioconductor.org/ Blog: http://userprimary.net/user/ __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html

Re: [R] Nodes edges with similarity matrix

2007-08-28 Thread Seth Falcon
Along with the example I gave using graphAM, you might also want to look at the help page for the distGraph class which may be more directly what you want: library(graph) class ? distGraph __ R-help@stat.math.ethz.ch mailing list https

Re: [R] Nodes edges with similarity matrix

2007-08-28 Thread Gabor Grothendieck
wrong or misunderstood my apologies. cheers, Paul -- Research Technician Mass Spectrometry o The / o Scripps \ o Research / o Institute __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE

[R] p-Value

2007-08-27 Thread amna khan
, Pakistan. Email: [EMAIL PROTECTED] [EMAIL PROTECTED] [EMAIL PROTECTED] [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org

Re: [R] (coxph, se) Obtaining standard errors of coefficients from coxph to store

2007-08-27 Thread joris . dewolf
: Estimate Std. Error t value Pr(|t|) (Intercept) 1.6210 0.5332 3.040 0.0161 * b-0.7667 0.5037 -1.522 0.1664 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 Residual standard error: 1.142 on 8 degrees of freedom Multiple R-Squared: 0.2246

[R] Problem with save or/and if (I think but maybe not ...)

2007-08-27 Thread Ptit_Bleu
Hi, I recently discovered the R program and I thought it could be useful to me. I have to analyse data saved as .Px file (x between 0 and 8 - .P0 files have 18 lines at the beginning that I have to skip). New files are generated everyday. This is my strategy : In order to analyse the data, I

[R] I again with shorter message and script

2007-08-27 Thread Ptit_Bleu
/Problem-with-save-or-and-if-%28I-think-but-maybe-not-...%29-tf4333945.html#a12343633 Sent from the R help mailing list archive at Nabble.com. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting

Re: [R] Problem with save or/and if (I think but maybe not ...)

2007-08-27 Thread Prof Brian Ripley
On Mon, 27 Aug 2007, Ptit_Bleu wrote: Hi, I recently discovered the R program and I thought it could be useful to me. I have to analyse data saved as .Px file (x between 0 and 8 - .P0 files have 18 lines at the beginning that I have to skip). New files are generated everyday

Re: [R] Calculating diameters of cirkels in a picture.

2007-08-27 Thread Bartjoosen
-and-white image. --- Moshe Olshansky [EMAIL PROTECTED] wrote: Hi Bart, I have never used image processing software in R (I was doing this with Matlab), but here is what I would have done algorithmically: 1) convert the picture to gray-scale 2) find a threshold value which separates

Re: [R] Problem with save or/and if (I think but maybe not ...)

2007-08-27 Thread Ptit_Bleu
/31_07_2007.P1 d:/Mydata/31_07_2007.P2 [5] d:/Mydata/31_07_2007.P3 tfichiers tfichiers -- View this message in context: http://www.nabble.com/Problem-with-save-or-and-if-%28I-think-but-maybe-not-...%29-tf4333945.html#a12344036 Sent from the R help mailing list archive at Nabble.com

[R] Column naming mystery

2007-08-27 Thread Werner Wernersen
? Thank you very much in advance! Werner Machen Sie Yahoo! zu Ihrer Startseite. Los geht's: __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting

Re: [R] Problem with save or/and if (I think but maybe not ...)

2007-08-27 Thread Ptit_Bleu
and testing manually alternative scripts ... Hoping to read you again, Ptit Bleu. -- View this message in context: http://www.nabble.com/Problem-with-save-or-and-if-%28I-think-but-maybe-not-...%29-tf4333945.html#a12344227 Sent from the R help mailing list archive at Nabble.com

[R] [SOLVED] save/load - I finally found (to be honnest : jholtman found)

2007-08-27 Thread Ptit_Bleu
will also be able to help people). Have a nice week, Ptit Bleu. -- View this message in context: http://www.nabble.com/Problem-with-save-or-and-if-%28I-think-but-maybe-not-...%29-tf4333945.html#a12345123 Sent from the R help mailing list archive at Nabble.com

Re: [R] Monmonier algorithm

2007-08-27 Thread Thibaut Jombart
Hello, Here is a late answer, but an answer nonetheless to the question I asked almost one year ago on this list: On Wed, 29 Mar 2006, Thibaut Jombart wrote: Hello list, http://tolstoy.newcastle.edu.au/R/help/06/03/24318.html#24322qlink1 / / / does anyone know if Monmonier algorithm

[R] Confidence intervals for ccf()

2007-08-27 Thread Gustaf Rydevik
Hello, This is not a purely R-question, but perhaps someone can help me anyway. I am trying to estimate the correlation between two time series (which are both basically different types of measurements of the same phenomena), using both cor.test() (with pearson as method) and ccf(). Now

[R] [R-pkgs] proftools package now available from CRAN

2007-08-27 Thread Luke Tierney
PROFILE OUTPUT PROCESSING TOOLS FOR R = This package provides some simple tools for examining Rprof output and, in particular, extracting and viewing call graph information. Call graph information, including which direct calls

Re: [R] FAQ 7.x when 7 does not exist. Useability question

2007-08-27 Thread John Kane
to find out any number of R idiosycracies. However there is no numbering on the FAQ Table of Content or on the Sections Tables of Contents. Hmm, doc/FAQ does have a numbered table of contents and numbered sections and doc/manual/R-FAQ.html does have numbered sections and my

Re: [R] Column naming mystery

2007-08-27 Thread Werner Wernersen
! __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

[R] how to write nicely a condition on a loop for (that is, not like I did)

2007-08-27 Thread Ptit_Bleu
it taking advantages of the R language (which I don't master at all), that is with less if tests. To sum up : nfichiers is a list of files (with .P0 or .Px (x0) extension) I have to copy to a database. nfichiers can also be 0 if there is no file to copy p0fichiers is the list of files having the .P0

[R] How can I interpret this test hypothesis test

2007-08-27 Thread Tom La Bone
. Note that the normal approximation is OK for large samples but may give unacceptable results for small samples. I am unaware of any packages in R that perform an exact runs test. Tom I have used runs.test (Package tseries) for computes the runs test for randomness , but I get this result

Re: [R] FAQ 7.x when 7 does not exist. Useability question

2007-08-27 Thread Duncan Murdoch
On 8/27/2007 8:52 AM, John Kane wrote: --- Duncan Murdoch [EMAIL PROTECTED] wrote: I like the first, simple suggestion best; I'll put it into R-devel. (With the slight change to use ul.menu instead of just ul, because FAQ 2.7 includes a plain ul list.) Duncan Murdoch Thanks Deepayan

Re: [R] subset using noncontiguous variables by name (not index)

2007-08-27 Thread Muenchen, Robert A (Bob)
Gabor, That works great! I think this would be a very helpful addition to the main R distribution. Perhaps with a single colon representing numerical order (exactly as you have written it) and two colons representing the order of the variables as they appear in the data frame (your first example

Re: [R] R 2.5.1 - Rscript through tee

2007-08-27 Thread Dirk Eddelbuettel
a; sleep 5; echo b) | tee OUT | | the output is timely, not batched. | | So, is there a way to tell R (or Rscript) that standard output should be | unbuffered, even if it is not directly connected to a terminal? Use explicit print statements, e.g. print(a - 1) Also, you still have little

[R] validate (package Design): error message subscript out of bounds

2007-08-27 Thread Wentzel-Larsen, Tore
Dear R users I use Windows XP, R2.5.1 (I have read the posting guide, I have contacted the package maintainer first, it is not homework). In a research project on renal cell carcinoma we want to compute Harrell's c index, with optimism correction, for a multivariate Cox regression and also

Re: [R] subset using noncontiguous variables by name (not index)

2007-08-27 Thread Thomas Lumley
On Mon, 27 Aug 2007, Muenchen, Robert A (Bob) wrote: Gabor, That works great! I think this would be a very helpful addition to the main R distribution. Perhaps with a single colon representing numerical order (exactly as you have written it) and two colons representing the order

Re: [R] R-2.5.1 RedHat EL5 compilation failed

2007-08-27 Thread Stefan Grosse
Original Message Subject: [R] R-2.5.1 RedHat EL5 compilation failed From: Wang Chengbin [EMAIL PROTECTED] To: r-help@stat.math.ethz.ch Date: 26.08.2007 15:22 I can't get R-2.5.1 compiled under RedHat EL5 with gcc 4.1.1. Configure failed at the following: You don't need

Re: [R] p-Value

2007-08-27 Thread Daniel Lakeland
... It refers to the probability if being farther away from 0 than the observed value *in either direction* -- Daniel Lakeland [EMAIL PROTECTED] http://www.street-artists.org/~dlakelan __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch

[R] Robust Standar Errors in Zero-Truncated Poisson

2007-08-27 Thread Pedro Mota Veiga
Hi. I would like to know if is it possible to estimate zero-truncated count models with robust standard errors in R. In Stata that is possible. I already made some searches and attempts but not obtained it. In R I made the estimation of the truncated poisson by the vglm command of VGAM package

[R] Sequential Rank Test

2007-08-27 Thread Bernardo Rangel Tura
Hi R-Masters I need use a sequential approach in serie of cases, but may data is not normal. If data is normal distribution is very easy create analysis using likelihood ratio like of Wald test. But in my case I need use a non-parametric test (Mann-Whitney). I was use: RSiteSearch

Re: [R] Sequential Rank Test

2007-08-27 Thread Henrique Dallazuanna
Hi Bernardo, I think that ?wilcox.test will help you. -- Henrique Dallazuanna Curitiba-Paraná-Brasil 25° 25' 40 S 49° 16' 22 O On 27/08/07, Bernardo Rangel Tura [EMAIL PROTECTED] wrote: Hi R-Masters I need use a sequential approach in serie of cases, but may data is not normal

Re: [R] Sequential Rank Test

2007-08-27 Thread Birgit Lemcke
I looked for the same topic today and found ?wilcox.test in the stats package. B Am 27.08.2007 um 17:33 schrieb Bernardo Rangel Tura: Hi R-Masters I need use a sequential approach in serie of cases, but may data is not normal. If data is normal distribution is very easy create

[R] FW: subset using noncontiguous variables by name (not index)

2007-08-27 Thread Muenchen, Robert A (Bob)
Thomas, that's a good point. I was thinking of anscombe[x1::y1] making it clear which one, but you would then want just x1::y1 to have unambiguous meaning on its own, which is impossible. As for x1:xN, it's unambiguous on its own. I thought one of the great advantages of R was that it could use

<    5   6   7   8   9   10   11   12   13   14   >