Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-05 Thread Uwe Ligges
Paul Johnson wrote: Wow! That was quick. One more thing would make my R2WinBUGS experience more perfect. I wish the bugs function explained how the user can write out the model.txt file from within the R code itself, rather than taking the current advice of creating it separately. The

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-05 Thread Gregor Gorjanc
Hello Paul, Wow! That was quick. One more thing would make my R2WinBUGS experience more perfect. I wish the bugs function explained how the user can write out the model.txt file from within the R code itself, rather than taking the current advice of creating it separately. The process now

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-04 Thread Paul Johnson
Hello, and thanks for the many very rapid responses to my requests for R/WinBUGS conversation. I do not know how to build OpenBUGS in linux, but will snoop around and see if I can't figure out what's wrong with linking R to BRugs.so. In the meanwhile... While we are on the linux/bugs topic, can

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-04 Thread Uwe Ligges
Paul Johnson wrote: Hello, and thanks for the many very rapid responses to my requests for R/WinBUGS conversation. I do not know how to build OpenBUGS in linux, but will snoop around and see if I can't figure out what's wrong with linking R to BRugs.so. In the meanwhile... While we

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-03 Thread Uwe Ligges
Finally fixed for the next release - and will also include the bugsLog() stuff as well. Best, Uwe Gregor Gorjanc wrote: Hello Paul, thank you very much for this report. You caught a bug in R2WinBUGS that was introduced by me. I added support for winepath in 1.1-1 version. Since I switch

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-02 Thread Uwe Ligges
anuel Morales wrote: As far as I can figure out, the problem with running LinBUGS on FC5 is that support for linuxthreads was removed after being deprecated in FC4. http://fedora.redhat.com/docs/release-notes/fc5/#id2887615 As a result, the LD_ASSUME_KERNEL workaround, which presumably

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-01 Thread Uwe Ligges
Paul Johnson wrote: Thank you very much. With the insertion of WINEPATH declaration, then the following example program does run. And really fast, too! library(R2WinBUGS) WINEPATH - /usr/bin/winepath Will be fixed in the package real soon now. Gregor, many thanks for the

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-01 Thread jun yan
I have used linbugs with the rbugs package for a recent work. It might be worthwhile trying. Jun On 5/1/06, Uwe Ligges [EMAIL PROTECTED] wrote: Paul Johnson wrote: Thank you very much. With the insertion of WINEPATH declaration, then the following example program does run. And really

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-01 Thread Gregor GORJANC
Hello Jun, On 5/1/06, jun yan [EMAIL PROTECTED] wrote: I have used linbugs with the rbugs package for a recent work. It might be worthwhile trying. It would be very nice, if you would consider to port new funcionality in rbugs to R2WinBUGS. I thought that this was your intention, when wine

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-01 Thread Uwe Ligges
Gregor GORJANC wrote: Hello Jun, On 5/1/06, jun yan [EMAIL PROTECTED] wrote: I have used linbugs with the rbugs package for a recent work. It might be worthwhile trying. It would be very nice, if you would consider to port new funcionality in rbugs to R2WinBUGS. I thought that this

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-01 Thread Paul Johnson
Dear Jun: How about telling us which version of Linux you use and how you make linbugs run? As far as I can tell, the OpenBUGS people have intentionally removed linbugs from their version 2.2. That leaves us with various scripts that people have posted tried, none work for me. Fedora Core 5,

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-05-01 Thread Manuel Morales
As far as I can figure out, the problem with running LinBUGS on FC5 is that support for linuxthreads was removed after being deprecated in FC4. http://fedora.redhat.com/docs/release-notes/fc5/#id2887615 As a result, the LD_ASSUME_KERNEL workaround, which presumably forced the use of linuxthreads

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-04-30 Thread Gregor Gorjanc
Hello Paul, thank you very much for this report. You caught a bug in R2WinBUGS that was introduced by me. I added support for winepath in 1.1-1 version. Since I switch between Windows and Linux I always set WINEPATH and then use it in bugs(). That's why I forgot to add it in further calls in

Re: [R] Making R talk to Win/OpenBUGS in Linux (again)

2006-04-30 Thread Paul Johnson
Thank you very much. With the insertion of WINEPATH declaration, then the following example program does run. And really fast, too! library(R2WinBUGS) WINEPATH - /usr/bin/winepath # An example model file is given in: model.file - system.file(package

[R] Making R talk to Win/OpenBUGS in Linux (again)

2006-04-29 Thread Paul Johnson
I'm back! I've just learned that, on a fully updated Fedora Core Linux5 sytem, the working solution to access Winbugs under wine via the R package rbugs no longer works. Here was my last post on this topic (with the formerly working solution) from January.