There are two things that occur. Firstly, I normally have to unset
no_proxy:
% unset no_proxy; R
Secondly, if for some reason http_proxy isn't being seen in R, you can
use the Sys.putenv() function within R to manipulate the environment
-Original Message-
From: [EMAIL PROTECTED]
d. sarthi maheshwari wrote:
Hi,
I am struggling with using R CMD BATCH command. Kindly suggest solution to
the following problem.
I have a function named CinC with accept two input parameters. This can be
shown as:
CinC - function(start, end)
where start and end both are
Hi,
There are many clues in the help.
First I created the file c:\sumfunction.R
x-as.numeric(commandArgs()[-1:-4] )
print(x)
addtogether-function(x,y){SUM-x+y;print(SUM)}
addtogether(x[1],x[2])
Then at the command line in Windows I enter
R --vanilla --slave --args 7 10 c:\sumfunction.R
On Tue, 14 Nov 2006, Laurence Darby wrote:
Hello,
I'm trying to run R from a webserver, which doesn't have an X server,
and produce pngs to go on a webpage, is this possible?
Yes, see the help page for png.
I'm doing it in gnuplot with
gnuplot set term png
gnuplot set output
With
Prof Brian Ripley wrote:
On Tue, 14 Nov 2006, Laurence Darby wrote:
Is there anyway to remove this dependency on X11?
Please read the help page. R's png device uses X11 for its fonts. You
need fonts from somewhere, and vanilla Unix systems don't come with any
other sets. You can
Laurence Darby wrote:
Prof Brian Ripley wrote:
On Tue, 14 Nov 2006, Laurence Darby wrote:
Is there anyway to remove this dependency on X11?
Please read the help page. R's png device uses X11 for its fonts. You
need fonts from somewhere, and vanilla Unix systems don't come with any
Be careful not to use clock speed as a measure of computer performance.
Pentium 4s (and the comparable Xeons) were intended to be run very fast,
but never managed it. So a 2.4GHz P4 proved to be slower than a 1GHz
PIII.
Unless you are running Windows 64, the chip having some 64-bit
[EMAIL PROTECTED] writes:
Hello
Using R v. 2.3.1 which I installed recently, when I start it as root, there
is nothing
I can do. I get Error: function xx not found even when trying to leave R
using
q(). R works fine when started by an ordinary user. I rechecked the root
environment
Does any one have solution for R not running? I am getting the error
message. Please Advice.
Thanks
1. gunzip R-patched.tar.gz
2. tar -xvf R-patched.tar
3. changed the directory to the newly created directory R-patched
4. Typed ./configure
5. Typed make
6. Make check
7.
Have you checked and see if there is any error in steps 5 through 8? If you
can't start R, I doubt steps 6 and 7 ran fine.
Andy
From: Pramod Anugu
Does any one have solution for R not running? I am getting
the error message. Please Advice.
Thanks
1. gunzip R-patched.tar.gz
On Fri, Jun 30, 2006 at 07:56:41AM -0500, Pramod Anugu wrote:
Does any one have solution for R not running? I am getting the error
message. Please Advice.
Yes, you have emailing the group fairly regularly about your troubles.
And you have been told just about each and every time to *check the
Just for the record. (One of the) problem was that configure picked up
ATLAS, but had problem with it at link time for whatever reason.
(This is on some version of Redhat, x86_64. I should think there are people
who have similar setup and got both ATLAS and readline to work.)
Andy
From:
] on behalf of Pramod Anugu
Sent: Wed 6/28/2006 4:18 PM
To: r-help@stat.math.ethz.ch
Subject: Re: [R] Running R [Broadcast]
[EMAIL PROTECTED] R-2.3.0]# ./configure
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
loading site script
Liaw, Andy [EMAIL PROTECTED] writes:
You have two choices (AFAIK):
1. Tell configure exactly where to find the readline header files (by
something like --with-readline=/where/the/files/are, check configure
--help).
2. Compile R without readline; i.e., configure --with-readline=no.
Thank you Andy for your suggestion. I used the method 2 and was able to go
upto Step 8. But When I type R
# R
Fatal error: unable to open the base package
1. Tell configure exactly where to find the readline header files (by
something like --with-readline=/where/the/files/are, check configure
1. tar -zxvf R-2.3.0.tar.gz
2. changed the directory to the newly created directory R-2.3.0
3. Typed ./configure
4. Typed make
make: *** No targets specified and no makefile found. Stop.
I cannot run make. Please let me know.
#gcc -v
Reading specs from
Pramod Anugu [EMAIL PROTECTED] writes:
1. tar -zxvf R-2.3.0.tar.gz
2. changed the directory to the newly created directory R-2.3.0
3. Typed ./configure
and what happened here??? Presumably an error since no Makefile was
created.
4. Typed make
make: *** No targets specified and no
[EMAIL PROTECTED] R-2.3.0]# ./configure
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
loading site script './config.site'
loading build specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir...
?commandArgs
On Thu, 2006-06-15 at 16:05 -0700, Eric Hu wrote:
Hi I have a R script that needs to run a few times for different
systems. I use R --no-save r.script for one system. I am trying with
no luck to use R CMD BATCH to introduce an stdin input variable for
the script. I wonder if
I have downloaded R-2.3.0.tar.gz for Linux 64 bit processor
1. Untar tar -zxvf R-2.3.0.tar.gz
2. changed the directory to the newly created directory R-2.3.0
3. Typed ./configure
4. Typed make
5. Copied the Script File R from directory R-2.3.0/bin/R to
/usr/local/bin/R.
6. Typed R
Fatal error:
At step 5, don't copy the file. Instead, do:
make install
--
Andrew J Perrin - andrew_perrin (at) unc.edu - http://perrin.socsci.unc.edu
Assistant Professor of Sociology; Book Review Editor, _Social Forces_
University of North
On 05/31/06 09:25, Pramod Anugu wrote:
I have downloaded R-2.3.0.tar.gz for Linux 64 bit processor
1. Untar tar -zxvf R-2.3.0.tar.gz
2. changed the directory to the newly created directory R-2.3.0
3. Typed ./configure
4. Typed make
5. Copied the Script File R from directory R-2.3.0/bin/R to
: unable to open the base package
I get the error message. Please advice
-Original Message-
From: Andrew Perrin [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 31, 2006 9:33 AM
To: Pramod Anugu
Cc: r-help@stat.math.ethz.ch
Subject: Re: [R] Running R
At step 5, don't copy the file. Instead
the base package
I get the error message. Please advice
-Original Message-
From: Andrew Perrin [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 31, 2006 9:33 AM
To: Pramod Anugu
Cc: r-help@stat.math.ethz.ch
Subject: Re: [R] Running R
At step 5, don't copy the file. Instead, do
On 05/31/06 09:39, Pramod Anugu wrote:
5. Typed make install
6. Typed R
Fatal error: unable to open the base package
I get the error message. Please advice
Other things to try (aside from make check):
1. Make sure you are root before you say make install.
2. Check to see that the
-
From: Liaw, Andy [mailto:[EMAIL PROTECTED]
Sent: Wednesday, May 31, 2006 10:07 AM
To: [EMAIL PROTECTED]; 'Andrew Perrin'
Cc: r-help@stat.math.ethz.ch
Subject: RE: [R] Running R
It's always a good idea to do
make check
or even
make check-all
before make install. If the build does
; 'Andrew Perrin'
Cc: r-help@stat.math.ethz.ch
Subject: RE: [R] Running R [Broadcast]
Still the same problem after the changes
I have downloaded R-2.3.0.tar.gz for Linux 64 bit processor
1. tar -zxvf R-2.3.0.tar.gz
2. changed the directory to the newly created directory R-2.3.0
3. Typed
Jonathan Baron wrote:
5. Copied the Script File R from directory R-2.3.0/bin/R to
/usr/local/bin/R.
6. Typed R
The instructions say that you should use
make install
unless you want to run R from the directory into which you
unpacked it.
Another idea is to have a symlink (here
Under the below seection it talks about X86_64 archetecture for Linux.
1. tar -zxvf R-2.3.0.tar.gz
2. changed the directory to the newly created directory R-2.3.0
3. Typed ./configure 'r_arch=name'
4. Typed make
5. Make check
6. make check-all
7. Typed make install
8. Typed R
I still get the same
Barry Rowlingson wrote:
Gavin Simpson wrote:
Dear list,
My employer uses a Windows 2000 Terminal Server-based system for its
college-wide managed computer service - computers connect directly to
the WTS servers for their sessions, using a Citrix ICA client. When I
asked them to install R
Gavin Simpson wrote:
Dear list,
My employer uses a Windows 2000 Terminal Server-based system for its
college-wide managed computer service - computers connect directly to
the WTS servers for their sessions, using a Citrix ICA client. When I
asked them to install R (Windows) on an older
On Tue, 2006-04-25 at 17:32 +0100, Barry Rowlingson wrote:
Gavin Simpson wrote:
Dear list,
My employer uses a Windows 2000 Terminal Server-based system for its
college-wide managed computer service - computers connect directly to
the WTS servers for their sessions, using a Citrix ICA
A quick search of the archives (http://finzi.psych.upenn.edu/nmz.html)
produces several hits. Just one example:
http://finzi.psych.upenn.edu/R/Rhelp02a/archive/24327.html
Sean
On May 10, 2005, at 7:26 AM, Tarun Kumar Singh wrote:
Hi all,
Is it possoble to include an R function in a Perl
To: Tarun Kumar Singh
Cc: r-help@stat.math.ethz.ch
Subject: Re: [R] Running R from Perl program
A quick search of the archives (http://finzi.psych.upenn.edu/nmz.html)
produces several hits. Just one example:
http://finzi.psych.upenn.edu/R/Rhelp02a/archive/24327.html
Sean
On May 10, 2005, at 7:26 AM
On Mon, 22 Nov 2004, Prof Brian Ripley wrote:
[...]
BTW, I believe running R 2.0.x from a CD will be a lot slower than 1.9.1
because of lazy loading and frequent file accesses: that's a theoretical
issue we intend to address for 2.1.0, but not one anyone has yet commented
that it is a problem.
I
On Mon, 2004-11-22 at 02:41, bogdan romocea wrote:
Better install and run R from a USB flash drive. This will save you
the trouble of re-writing the CD as you upgrade and install new
packages. Also, you can simply copy the R installation on your work
computer (no install rights needed); R will
Sent: Monday, November 22, 2004 3:42 AM
To: bogdan romocea
Cc: [EMAIL PROTECTED]; R-News
Subject: Re: [R] Running R from CD?
On Mon, 2004-11-22 at 02:41, bogdan romocea wrote:
Better install and run R from a USB flash drive. This will save you
the trouble of re-writing the CD as you
Let's be a little careful here. An R for Windows installation is
relocatable, so you can just install it into a temporary directory and
burn a copy of that onto CD. (That may not be true after installing
packages into a non-default library.) It is not true of a Unix or MacOS X
installation,
. I'll dig up the
old disk, make some comparisons and forward the results.
The bottom line is that it is not a big issue for me.
Tom Mulholland
-Original Message-
From: Prof Brian Ripley [mailto:[EMAIL PROTECTED]
...
Subject: Re: [R] Running R from CD?
...
BTW, I believe running R 2.0.x
Better install and run R from a USB flash drive. This will save you
the trouble of re-writing the CD as you upgrade and install new
packages. Also, you can simply copy the R installation on your work
computer (no install rights needed); R will run.
HTH,
b.
From: Hans van Walen
See comments below.
On Thu, 2004-10-28 at 18:49, S Peri wrote:
Dear Group,
I am using DEAL package for modeling signal
transduction nets. This process is deal slow on a
SunFire server with 8 gigs ram.
we have a grid that can process much faster that one
individual server.
to facilitate that: Snow, Rmpi, Rpvm, TaskPR and perhaps others (browse
cran.rproject.org).
Reid Huntsinger
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Adaikalavan Ramasamy
Sent: Thursday, October 28, 2004 2:41 PM
To: S Peri
Cc: R-help
Subject: Re: [R
You can simply start a Linux live distribution
including R (for example bio-knoppix) from CD, but
you have to restart pc with cd inside.
A.S.
Alessandro Semeria
Models and Simulations Laboratory
Montecatini Environmental Research Center (Edison Group),
Via Ciro
On Fri, 27 Aug 2004, Hans van Walen wrote:
At work I have no permission to install R. So, would anyone know whether it
is possible to create a CD with a running R-installation for a windows(XP)
pc? And of course, how to?
Yes, for a suitable definition of `CD'. (You need the extensions which
Hi!
Make a isntallation of R on a PC where it is allowed. Install all packages you need.
Burn the installation folder (rw1091) on the CD.
Start R by clicking on Rgui.exe in the bin folder (rw1091/bin).
Or set a path on the command line to (CD drive letter) :\rw1091\bin
Or create a shortcut.
This
On Fri, 2004-06-11 at 03:49, Tiago R Magalhaes wrote:
Hi to you all
My question is:
there is a package written in UNIX for which there is no Mac version.
I would like to know if it's possible to install the R UNIX version on the
MacOSX and run that UNIX package on my Mac (through this
Hi:
Please tell us: which Mac OS are you using?
If you are using any of the 10.x, then you should download R-1.9.0 at:
http://cran.us.r-project.org/bin/macosx
If you have anything older (MacOS 9 or lower), then you should visit:
http://cran.us.r-project.org/bin/macos
Regards...
On Thu, 10 Jun
Hola ulisses
thank you very much for replying to my posting
I am using the last Mac Version:
OS X 10.3 Panther
I use R in the Mac and it works fine
The thing is that I want to use a package that was made in UNIX and I
wanted to know how easy it would be to run the UNIX version of R in the
Mac
Hola!
If you are already using Panther with R.dmg, then is pretty straight
forward to use a Unix package (panther it's a kind of Unix). If the
package is already on CRAN, all you have to do is to search the package
(either from the command line or from the menus) and then install. If
what
This cannot presently be done, as the R internals do not multitask. I am
not sure what you would want to happen if the background and foreground
commands both tried to write a new version of object `foo', BTW.
Allowing multiple execution threads and setReader() as described in the
Green Book
You could try looking at the library fork. However,
this generally sounds like a bad idea and if you do
this, you're kind of asking for trouble with threading
issues, as R is not thread-safe.
I'm not sure if fork works on all platforms, since I
believe it works by running a unix shell command.
By library I of course mean package.
-Andrew
--- Andrew Young [EMAIL PROTECTED] wrote:
You could try looking at the library fork.
However,
this generally sounds like a bad idea and if you do
this, you're kind of asking for trouble with
threading
issues, as R is not thread-safe.
I'm
Did you try actually reading the request (let alone the informed
repsonse you included) ...
I want to do this in the same session, rather than with multiple calls
to R,
whereas package fork's DESCRIPTION says
Description: These functions provides simple wrappers around the Unix
Perhaps this is a interesting starting point for you?
http://steve.stat.tku.edu.tw/R_PHP/doR.html
regards,christian
Am Dienstag, 3. Februar 2004 03:26 schrieb [EMAIL PROTECTED]:
I would like to construct a PHP script that runs R to generate a
graphics file. Running R itself is no problem.
[EMAIL PROTECTED] writes:
Below are 2 scripts (png.R and pdf.R) I am trying to run in R from
PHP.
# png.R
x11(display=:5)
png(filename=g.png)
plot(1:5)
graphics.off()
# pdf.R
pdf(file=g.pdf)
plot(1:5)
graphics.off()
Both run from
[EMAIL PROTECTED] wrote:
Both run from terminals and png.R will run without a normal X server
if Xvfb is running.
Neither runs under PHP, though (when invoked as R --no-save
xxx.R).
They yield the following errors (with the R startup banner deleted
for compactness):
could not open PNG file
On Tue, 3 Feb 2004, Philippe Glaziou wrote:
@biology.nmsu.edu [EMAIL PROTECTED] wrote:
I would like to construct a PHP script that runs R to generate a
graphics file. Running R itself is no problem. However, it seems
impossible to instantiate one of the graphics devices to create
[EMAIL PROTECTED] wrote:
Is there a trick to creating a graphics device in the absence of an
actual display in order to create an image in a file?
Look for Xvfb (X virtual frame buffer). Not sure what OS you are
running, but on RH9 and Fedora, at least, there is a package called
XFree86-Xvfb.
I
@biology.nmsu.edu [EMAIL PROTECTED] wrote:
I would like to construct a PHP script that runs R to generate a
graphics file. Running R itself is no problem. However, it seems
impossible to instantiate one of the graphics devices to create
output. For example, the normal bitmap devices (e.g.,
: [R]Running R remotely in Windows Environment?
Hi,
I also suggest to use a Linux Server. You can work on this
machine via ssh
(e.g. with PuTTY) and transfer the input and output files
with scp or a samba
server (which is easy to install and very convenient to use
for windows
users).
Arne
On Wed, 28 Jan 2004, Jim Porzak wrote:
We are considering setting up a fast, RAM loaded machine as an R-server
to handle the big problems not suitable for individual desktops and, also,
to process ad hoc analysis requests via our portal. We are 99% a Windows
shop, so first choice is a
Hi,
I also suggest to use a Linux Server. You can work on this machine via ssh
(e.g. with PuTTY) and transfer the input and output files with scp or a samba
server (which is easy to install and very convenient to use for windows
users).
Arne
On Thursday 29 January 2004 08:53, Prof Brian
I would also give my votes to Linux. That's essentially the main function
of our Linux boxes, and some of the boxes are `RAM loaded'. We just use VNC
to connect from the Windoze desktop to the Linux boxes. We can mount the
Windows shared drives on the Linux boxes for file sharing. One of my
Porzak
Cc: [EMAIL PROTECTED]
Subject: Re: [R]Running R remotely in Windows Environment?
Hi,
I also suggest to use a Linux Server. You can work on this
machine via ssh
(e.g. with PuTTY) and transfer the input and output files
with scp or a samba
server (which is easy to install
On Thu, Jan 29, 2004 at 04:17:48PM -0800, Vadim Ogranovich wrote:
Hi,
While we are on the topic of Running R remotely in Windows Environment
maybe someone could help with the following specific problem. I run R on
a Linux box from my WindowsXP laptop. I do so via Exceed, which for some
Hi!
On Thu, Nov 13, 2003 at 09:59:48AM +, Arne Gjuvsland wrote:
I have a problem with running my R programs as queue jobs. When I try
to submit a batch file to the queue with qsub I get the following error
message:
Jason Turner [EMAIL PROTECTED] writes:
Philipp Pagel wrote:
Hi!
On Thu, Nov 13, 2003 at 09:59:48AM +, Arne Gjuvsland wrote:
I have a problem with running my R programs as queue jobs. When I try
to submit a batch file to the queue with qsub I get the following error
message:
On 13 Nov 2003, Peter Dalgaard wrote:
Jason Turner [EMAIL PROTECTED] writes:
Philipp Pagel wrote:
Hi!
On Thu, Nov 13, 2003 at 09:59:48AM +, Arne Gjuvsland wrote:
I have a problem with running my R programs as queue jobs. When I try
to submit a batch file to the queue with
A search on Google shows that libpcre.so.0 is a Perl-compatible regular
expression library. Does R use that, or is it the queue script? Have you
checked /usr/lib for that library? Maybe you need to install the library
or rerun ldconfig. You can get info about shared libraries with the ldd
command.
At 11:56 13.11.2003 +, Prof Brian Ripley wrote:
On 13 Nov 2003, Peter Dalgaard wrote:
Jason Turner [EMAIL PROTECTED] writes:
Philipp Pagel wrote:
Hi!
On Thu, Nov 13, 2003 at 09:59:48AM +, Arne Gjuvsland wrote:
I have a problem with running my R programs as queue jobs.
Have you installed ESS (Emacs Speak Statistics) ?
If not look at http://www.sciviews.org/_rgui/
Bye!
A. S.
|+|
|Alessandro Semeria |Tel. +39 544 536811 |
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