Re: [R] orphaned packages

2004-01-26 Thread Prof Brian Ripley
On Sun, 25 Jan 2004, Neil Eastep wrote: Are there many packages that are orphaned, and have a better half much like bootstrap? Not many are orphaned -- currently precisely two although one previously orphaned has acquired a new maintainer recently. I suspect a few more have non-responsive

RE: [R] Re-Post: Combining Factors in model.matrix

2004-01-26 Thread Paul Boutros
On Sat, 24 Jan 2004 [EMAIL PROTECTED] wrote: I didn't get any response on this before, leading me to believe I've missed something fundamental. Can anybody guide me in the correct direction for more help on this? Thanks for your reply: You will need to explain to us why the object

Re: [R] D(COM) with Excel

2004-01-26 Thread Prof Brian Ripley
On Mon, 26 Jan 2004, Joel Pitt wrote: Hi there, I'm currently trying to use R in an automated macro with Excel, and to this effect I've been using the D(COM) server. However I've been having alot of problems with it, because it seems to be limited to only recieving and sending arrays.

RE: [R] Re-Post: Combining Factors in model.matrix

2004-01-26 Thread Prof Brian Ripley
On Mon, 26 Jan 2004, Paul Boutros wrote: On Sat, 24 Jan 2004 [EMAIL PROTECTED] wrote: I didn't get any response on this before, leading me to believe I've missed something fundamental. Can anybody guide me in the correct direction for more help on this? Thanks for your reply:

RE: [R] Re-Post: Combining Factors in model.matrix

2004-01-26 Thread Paul Boutros
You will need to explain to us why the object you list is `the design matrix': have *you* a reference for that? R is doing the conventional thing, and I at least have no idea where your example comes from. Perhaps I have used the wrong terminology? My understanding of a design

Re: [R] Error Loading r

2004-01-26 Thread Uwe Ligges
On Sun, 25 Jan 2004, Jerome Swartz wrote: Hi there, This is the first time I have encountered such an error. Error loading r. I did forward the call to our desktop services, but I am just a bit curious on what the actual problem could be and how I could have resolved myself. OS is

Re: [R] how to keep functions while remove all other commands

2004-01-26 Thread Petr Pikal
Hi On 24 Jan 2004 at 21:47, Yong Wang wrote: Dear all: a quick question: I am used to apply rm(list=()) regularly to remove all old codes in preventing them creeping in current analysis.however, with that application, functions I wrote are also removed. please let me know how to keep the

Re: [R] warning associated with Logistic Regression

2004-01-26 Thread David Firth
On Sunday, Jan 25, 2004, at 18:06 Europe/London, (Ted Harding) wrote: On 25-Jan-04 Guillem Chust wrote: Hi All, When I tried to do logistic regression (with high maximum number of iterations) I got the following warning message Warning message: fitted probabilities numerically 0 or 1 occurred

Re: [R] Response Surface

2004-01-26 Thread Petr Pikal
Hallo On 23 Jan 2004 at 9:08, Li Xiaolei wrote: Hi, Is there any existing way in R of doing response surface analyses and plotting the response surface, like what minitab can do? Well, I do not know about any package doing response surface design, but if you already made experiments

Re: [R] D(COM) with Excel

2004-01-26 Thread David James
Hi Joel, You may want to take a look at the RDCOM implementation at http://www.omegahat.org/RDCOMServer. We've had very good experience with it. -- David Joel Pitt wrote: Hi there, I'm currently trying to use R in an automated macro with Excel, and to this effect I've been using the

[R] correlation/random effects when using nlme

2004-01-26 Thread J-C. Marioni
Hi, I'm trying to use nlme to program a model where, as well as a number of fixed effects, I have a random effect for each subject in my model. I would also like to include a correlation statement in my model, where the grouping factor for the correlation is a subset of the observations on a

Re: [R] Fitting compartmental model with nls and lsoda?

2004-01-26 Thread Michael A. Miller
DivineSAAM == DivineSAAM [EMAIL PROTECTED] writes: Dear Colleagues, Our group is also working on implementing the use of R for pharmacokinetic compartmental analysis. Perhaps I have missed something, but fit - nls(noisy ~ lsoda(xstart, time,

[R] Openin a file from spss

2004-01-26 Thread Dennis Di Mascio
Hello everybody, I'm trying to open an SPSS (version 11.5) file with R (1.8.1 for windows) and I have some problems. I already used the following syntax to open other files ant it worked fine. (I loaded the foreign package). Would be very nice to understand what happened because I'm going to work

Re: [R] scan() Bug

2004-01-26 Thread Prof Brian Ripley
The \zzz notation is octal (just like C)! I presume you want ASCII character 10, that is LF, not 8 (BS), although using \n would be much easier to remember. On Mon, 26 Jan 2004, Greg Riddick wrote: Thanks for your suggestions on dealing with binary files, Prof Ripley I ended up using this

Re: [R] scan() Bug?

2004-01-26 Thread Peter Dalgaard
Greg Riddick [EMAIL PROTECTED] writes: Works fine now...though I have noticed that the sep character that actually gets written to the file is -2 the value specified. So I wanted \10 and needed to specify \12 to get it. Am I doing something wrong here? Just overlooking that such codes are

Re: [R] warning associated with Logistic Regression

2004-01-26 Thread Ravi Varadhan
Hi All: I am really fascinated by the content and the depth of discussion of this thread. This really exemplifies what I have come to love and enjoy about the R user group - that it is not JUST an answering service for getting help on programming issues, but also a forum for some critical

[R] Learning to use survey package

2004-01-26 Thread [EMAIL PROTECTED]
Being an electrical engineer lent to statistics, I'm now studying the stratified sampling techniques using the survey package and its documentation. I've found somewhat complex the example in the package also for the magnitude of the dataset used and the not-clearly-exposed purposes of the

[R] Trouble with HTML search engine Mozilla Firebird

2004-01-26 Thread Damon Wischik
I'm having trouble with the HTML-based search engine, and I'd be grateful for any advice. I am using Mozilla Firebird 0.7 on Debian 3.0 with R 1.8.0. (I've also had the trouble with Mozilla Firebird 0.6 on Debian 3.0. I also use Mozilla Firebird 0.6 on Windows XP, and I have no trouble with the

[R] Fortran source code

2004-01-26 Thread Ka Yee Yeung
Hi, I am wondering if it is possible to view the Fortran source code called by R functions. In particular, I am interested in the leaps.setup function in a package called leaps, which calls Fortran functions ssleaps, initr etc. Any help would be greatly appreciated. Ka Yee Yeung Bioinformatics

Re: [R] Fortran source code

2004-01-26 Thread Peter Dalgaard
Ka Yee Yeung [EMAIL PROTECTED] writes: Hi, I am wondering if it is possible to view the Fortran source code called by R functions. R is Open Source, and so are most of the packages developed for it. Would be a rare case if the source code was not available. In particular, I am

[R] Question about design matrix

2004-01-26 Thread Yongwan Chun
Now, I am working with some design matrices. My problem is to set contrasts option. Now I want to use contr.sum as the option, and it works properly. However, this option sets the last element of a factor as -1. For example, if I have a factor which has 5 elements and want to use the contr.sum

Re: [R] D(COM) with Excel

2004-01-26 Thread Erich Neuwirth
Hi, as the one who wrote the RExcel package let me add something to the discussion. Thomas Baier's R (D)COM package tries to use native Windows data types to be as fast as possible. My RExcel package has the following philosophy: Offer R functions to people who think spreadsheet. One way of

[R] conditional assignment

2004-01-26 Thread uaca
Hi all I want to conditionally operate on certain elements of a matrix, let me explain it with a simple vector example z- c(1, 2, 3) zz - c(0,0,0) null - (z 2) ( zz - z) zz [1] 1 2 3 why zz is not (0, 0, 3) ? the null - assignment is to keep the console silent in the other hand,

Re: [R] Fortran source code

2004-01-26 Thread Prof Brian Ripley
They are part of the package leaps_2.6.tar.gz on CRAN. Just look at the source package and not (I assume) a binary installation. On Mon, 26 Jan 2004, Ka Yee Yeung wrote: I am wondering if it is possible to view the Fortran source code called by R functions. In particular, I am interested

Re: [R] conditional assignment

2004-01-26 Thread Roger Bivand
On Mon, 26 Jan 2004 [EMAIL PROTECTED] wrote: Hi all I want to conditionally operate on certain elements of a matrix, let me explain it with a simple vector example z- c(1, 2, 3) zz - c(0,0,0) null - (z 2) ( zz - z) zz [1] 1 2 3 why zz is not (0, 0, 3) ? Break it

RE: [R] conditional assignment

2004-01-26 Thread Liaw, Andy
From: Simon Cullen On Mon, 26 Jan 2004 20:15:51 +0100, [EMAIL PROTECTED] wrote: I want to conditionally operate on certain elements of a matrix, let me explain it with a simple vector example z- c(1, 2, 3) zz - c(0,0,0) null - (z 2) ( zz - z) zz [1] 1 2 3 why zz is

Re: [R] conditional assignment

2004-01-26 Thread Prof Brian Ripley
On Mon, 26 Jan 2004, Simon Cullen wrote: On Mon, 26 Jan 2004 20:15:51 +0100, [EMAIL PROTECTED] wrote: I want to conditionally operate on certain elements of a matrix, let me explain it with a simple vector example z- c(1, 2, 3) zz - c(0,0,0) null - (z 2) ( zz - z) zz [1] 1

Re: [R] HTML help pages

2004-01-26 Thread Rolf Turner
Devin Johnson wrote: I am having trouble getting the HTML help pages to work. When I try the search engine I get an error on page response and nothing happens. When I try to click on the listed topics nothing happens. I am using both Mozilla and IE6 on XP and the same thing happens on each.

Re: [R] HTML help pages

2004-01-26 Thread Marc Schwartz
On Mon, 2004-01-26 at 15:58, Rolf Turner wrote: Devin Johnson wrote: I am having trouble getting the HTML help pages to work. When I try the search engine I get an error on page response and nothing happens. When I try to click on the listed topics nothing happens. I am using both

[R] write.table file=file.txt help

2004-01-26 Thread Kristin Kay Nicodemus
Hi all, I have a R script that creates several input files for an analysis program. It loops through the matrix read into R and picks out submatrices and then creates a separate output file for each submatrix. The loop works great, but I am having trouble getting all the separate output

RE: [R] write.table file=file.txt help

2004-01-26 Thread Andy Bunn
Look at ?paste for (j in 1:10) { write.table(j, file=paste(haplo.txt, j, sep=.), row.names=F, col.names=F, append=F, quote=F) } BTW, there have been many similar posts like this in the past. They are easily found using the search function at

RE: [R] write.table file=file.txt help

2004-01-26 Thread Kristin Kay Nicodemus
Thanks to Andy Bunn and Patrick Connolly for their help! Kristin Nicodemus __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

[R] Function R

2004-01-26 Thread Marcos
Hello, Please, I need a R function to optimize a function (maximizer ou minimizer) under restriction. What function do this? Thank you. Marcos __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the

Re: [R] write.table file=file.txt help

2004-01-26 Thread Sundar Dorai-Raj
Kristin Kay Nicodemus wrote: Hi all, I have a R script that creates several input files for an analysis program. It loops through the matrix read into R and picks out submatrices and then creates a separate output file for each submatrix. The loop works great, but I am having trouble

[R] The results of your email commands

2004-01-26 Thread r-announce-bounces
The results of your email command are provided below. Attached is your original message. - Results: Ignoring non-text/plain MIME parts - Done. ---BeginMessage--- The message contains Unicode characters and has been sent as a binary attachment. ---End Message---

[R] Reply : hi

2004-01-26 Thread postmaster
The recipient's mailbox is full. receiver: [EMAIL PROTECTED] Received: from [165.132.77.225] ([EMAIL PROTECTED]) by mh02.hanafos.com (Terrace MailWatcher) with ESMTP id 2004012713:21:46:219514.20887.5524 for [EMAIL PROTECTED]; Tue, 27 Jan 2004 13:21:46