Re: [R] Updating to nlme 3.1-62 failing from source (OS X)

2005-07-31 Thread Prof Brian Ripley
This is an internal compiler/assembler error - please check that your tools are consistent and if so report this as a MacOS X error. (It is the sort of thing which happens if gcc targetted for one assembler is used with another, for example on Solaris with GNU vs Sun assemblers.) Given that the

Re: [R] How do you increase memeory?

2005-07-31 Thread Mike Lawrence
memory.limit(size = x) where x is the desired memory limit in MB. Quoting "Briggs, Meredith M" <[EMAIL PROTECTED]>: > Hello > > > Function memory.size() =435109888. How do I increase it by, say 30%? > > Thanks > Meredith > > [[alternative HTML version deleted]] > > __

[R] How do you increase memeory?

2005-07-31 Thread Briggs, Meredith M
Hello Function memory.size() =435109888. How do I increase it by, say 30%? Thanks Meredith [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting g

Re: [R] lattice/ grid.layout/ multiple graphs per page

2005-07-31 Thread Deepayan Sarkar
On 7/28/05, McClatchie, Sam (PIRSA-SARDI) <[EMAIL PROTECTED]> wrote: > Background: > OS: Linux Mandrake 10.1 > release: R 2.0.0 > editor: GNU Emacs 21.3.2 > front-end: ESS 5.2.3 > - > > >-Original Message- > >From: Deepayan Sarkar [mailto:[EMAIL PROTECTED] >

Re: [R] partial SS for anova

2005-07-31 Thread John Fox
Dear Natalia, See the Anova() function in the car package. Also see the warning in ?Anova about "Type III" sums of squares. I hope this helps, John John Fox Department of Sociology McMaster University Hamilton, Ontario Canada L8S 4M4 905-525-9140x23604 http://so

Re: [R] farimaSim

2005-07-31 Thread Gabor Grothendieck
Note that if the only difference is the addition of ... to the formal arguments then you can just do this once in your session before using farimaSim: formals(farimaSim) <- c(formals(farimaSim), alist(... = )) Now farimaSim will have ... as an argument. e.g. > formals(farimaSim) <- c(formals(f

Re: [R] farimaSim

2005-07-31 Thread Diethelm Wuertz
Hansi Weissensteiner wrote: >Hello! > >I installed the fSeries package to get some farima time-series which i tried >with farimaSim, but unfortunately i got always an error. I tried it this way: > > > >>farimaSim(n = 1000, model = list(ar = 0.5, d = 0.3, ma = 0.1), method="freq") >> >> > >E

[R] Updating to nlme 3.1-62 failing from source (OS X)

2005-07-31 Thread Michael Kubovy
R Version 2.1.1 (2005-06-20); R Cocoa GUI 1.12 (1622); Mac OS X 10.4.2 (8C46) For nlme, the R package installer for CRAN (binaries) gives 3.1-60 as Repository Version as well as Installed Version. For CRAN (sources) it gives 3.1-62 as Repository Version and 3.1-60 as Installed Version. Wh

[R] OS X: workspace clear & workspace browser

2005-07-31 Thread Michael Kubovy
R Version 2.1.1 (2005-06-20); R Cocoa GUI 1.12 (1622); Mac OS X 10.4.2 (8C46) > rm(list = ls(all = TRUE)) > ls() character(0) But the workspace browser lists many objects. _ Professor Michael Kubovy University of Virginia Department of Psychology USPS: P.O.Bo

Re: [R] shlib compilation problem

2005-07-31 Thread Uwe Ligges
Petra Wallem wrote: > Hello everybody > > I am having the following problem intalling a packages on R 2.1.0 on OS. > Suse 9.1 > Using the command "R CMD" I get following error message R CMD what? > .../SHLIB/: line 1: make: command not found ERROR: compliation failed > for package 'vegan' > >

[R] shlib compilation problem

2005-07-31 Thread Petra Wallem
Hello everybody I am having the following problem intalling a packages on R 2.1.0 on OS. Suse 9.1 Using the command "R CMD" I get following error message .../SHLIB/: line 1: make: command not found ERROR: compliation failed for package 'vegan' Any help on why the make command is not found? Thank

Re: [R] Drawing a graph with vertices and edges using tcl/tk

2005-07-31 Thread Dirk Koschuetzki
Hello, On Sun, 31 Jul 2005 13:46:31 +0200, Søren Højsgaard <[EMAIL PROTECTED]> wrote: > Dear all; I would like to draw a graph with vertices and edges Another option besides graphviz and Rgraphviz is the sna package from cran. Look into the gplot function, perhaps it is what you need. Cheer

Re: [R] xyplot auto.key issue

2005-07-31 Thread Mike Lawrence
Hi again, Deepayan, I tried adding a "pch = c(1,2,3,4,5)" line in the auto key but the "zero-length 'pch'" error still occurs. Sundar, I tried your code using key instead of auto.key, and after tweaking it to fit my design (i.e. from "x~y, groups = a" to "x~y | a, groups = b") it works perfectly!

Re: [R] xyplot auto.key issue

2005-07-31 Thread Deepayan Sarkar
On 7/31/05, Mike Lawrence <[EMAIL PROTECTED]> wrote: > Hi Deepayan, > > Thanks for the reply, but when I enter the " type = "b" " code into the > auto.key > (see below) command I get the following message: > > Error in valid.pch(x$pch) : zero-length 'pch' Yes, this was a bug. I believe it's fix

Re: [R] Drawing a graph with vertices and edges using tcl/tk

2005-07-31 Thread Robert Gentleman
Rgraphviz is a fairly complete interface that works on all systems now, including Windows. http://www.bioconductor.org/packages/bioc/devel/src/contrib/html/Rgraphviz.html but not the absolute latest Graphviz (2.4) as it has gone through pretty extensive code rearrangements. We should have a vers

Re: [R] Drawing a graph with vertices and edges using tcl/tk

2005-07-31 Thread Gabor Grothendieck
Another approach is the Bell Labs graphviz system. See http://www.graphviz.com For an example of using it from R, see the dot.proto function in the 'proto' package. dot.proto generates dot language output to draw a graphviz graph of the objects in any R program written using 'proto'.

Re: [R] Drawing a graph with vertices and edges using tcl/tk

2005-07-31 Thread Peter Dalgaard
Søren Højsgaard <[EMAIL PROTECTED]> writes: > Dear all; I would like to draw a graph with vertices and edges, and I guess > tcl/tk would be appropriate. I don't know tcl/tk but have googled for a > 10-page (or so) introduction to 'getting started with tcl/tk in R' but > without any luck. > - Do

[R] Drawing a graph with vertices and edges using tcl/tk

2005-07-31 Thread Søren Højsgaard
Dear all; I would like to draw a graph with vertices and edges, and I guess tcl/tk would be appropriate. I don't know tcl/tk but have googled for a 10-page (or so) introduction to 'getting started with tcl/tk in R' but without any luck. - Does anyone know of the existence of such a document or an

Re: [R] xyplot auto.key issue

2005-07-31 Thread Sundar Dorai-Raj
Hi, Mike, Mike Lawrence wrote: > Hi Deepayan, > > Thanks for the reply, but when I enter the " type = "b" " code into the > auto.key > (see below) command I get the following message: > > Error in valid.pch(x$pch) : zero-length 'pch' > > Any suggestions? > Why not just ignore auto.key and us

Re: [R] catching errors in a loop

2005-07-31 Thread Henrik Bengtsson
I think you forgot to catch "error":s in your code, i.e. tryCatch({...}) will be the same as if you did {...}. You want to use a construct like for (ii in 1:10) { tryCatch({ # Put the code that may generate an error here. }, error = function(ex) { # here 'ex' is an instance of 's