Re: [R] R-excel

2007-08-11 Thread Prof Brian Ripley
On Fri, 10 Aug 2007, Peter Wickham wrote: I am running R 2.5.1 using Mac OSX 10.4.10. xlsReadWrite is a Windows binary. Instead, install and load packages: (1) gtools:(2) gdata. These are both Windows and Mac binaries. gdata depends on gtools, so be sure to load gtools first or set the

[R] Request

2007-08-11 Thread zahid khan
Dear All I want to run Phillips-Perron test with no constant and trend in estimated equation in urca library then how i can run it with command ur.pp()? whereas if i want to run ADF test in urca library then there is no problem.Kindly guide me in this regard. Thanks Zahid Khan Lecturer

Re: [R] Help using gPath

2007-08-11 Thread Paul Murrell
Hi Emilio Gagliardi wrote: haha Paul, It's important not only to post code, but also to make sure that other people can run it (i.e., include real data or have the code generate data or use one of R's predefined data sets). Oh, I hadn't thought of using the predefined

[R] shell and shell.exec on Windows

2007-08-11 Thread Erich Neuwirth
I have an Excel workbook MyWorkbook.xls containing an Auto_Open macro which I want to be run from R. shell.exec(MyWorkbook.xls) does that. shell(start MyWorkbook.xls) also runs it. In both cases, the Excel window is visible on screen when Excel is started. Is there a way of opening the sheet

[R] Library: circular

2007-08-11 Thread Raffaele Cotza
I am new in using R, and I am interested to use the spatial data analisys with circular. Please, if possible, to inform me about the installation of circular and its usage. I thank you very much in advance. Your truly Raffaele Cotza __

Re: [R] Any special interest in R/pic interface?

2007-08-11 Thread Paul Murrell
Hi A couple of comments/ideas/rambles: (o) I've read about pic, but never used it, but what I saw looked very cool. (i) In a way, this sounds a bit like the R2HTML package, but instead of taking R objects from data analysis and converting them to HTML, you take R objects from plotting and

[R] LDA and RDA: different training errors

2007-08-11 Thread dominic senn
Hello I try to fit a LDA and RDA model to the same data, which has two classes. The problem now is that the training errors of the LDA model and the training error of the RDA model with alpha=0 are not the same. In my understanding this should be the case. Am I wrong? Can someone explain what the

Re: [R] shell and shell.exec on Windows

2007-08-11 Thread Gabor Grothendieck
The system() function has an invisible= argument. The ryacas package uses system() to run yacas. See the runYacas() and yacasInvokeString() functions in yacas.R for examples: http://ryacas.googlecode.com/svn/trunk/R/yacas.R On 8/11/07, Erich Neuwirth [EMAIL PROTECTED] wrote: I have an Excel

Re: [R] GLMM: MEEM error due to dichotomous variables

2007-08-11 Thread Michael Dewey
At 14:31 07/08/2007, Elva Robinson wrote: I am trying to run a GLMM on some binomial data. My fixed factors include 2 dichotomous variables, day, and distance. When I run the model: modelA-glmmPQL(Leaving~Trial*Day*Dist,random=~1|Indiv,family=binomial) I get the error: iteration 1 Error in

[R] Connecting to database on statup

2007-08-11 Thread Ruddy M
Hello, Q/ Is it possible to create a DBMS connection automatically on startup of R? (Making sure of course that the db server has been started...) I am running MySQL on Mac OS X 10.4.2 with R2.4.1. I have tried to write a function using the RMySQL commands (below) and place them in .First of

Re: [R] QUESTION ON R!!!!!!!!!!!1

2007-08-11 Thread Uwe Ligges
I think I asked you yesterday on the [EMAIL PROTECTED] account to read the posting guide *before* posting to R-help and I asked you not to SHOUT!!! Uwe Ligges lecastil wrote: Good day. I am employed at a public entity that handles million information and records of several

Re: [R] LDA and RDA: different training errors

2007-08-11 Thread Uwe Ligges
dominic senn wrote: Hello I try to fit a LDA and RDA model to the same data, which has two classes. The problem now is that the training errors of the LDA model and the training error of the RDA model with alpha=0 are not the same. In my understanding this should be the case. Am I wrong?

Re: [R] Connecting to database on statup

2007-08-11 Thread Prof Brian Ripley
On Sat, 11 Aug 2007, Ruddy M wrote: Hello, Q/ Is it possible to create a DBMS connection automatically on startup of R? (Making sure of course that the db server has been started...) I am running MySQL on Mac OS X 10.4.2 with R2.4.1. I have tried to write a function using the RMySQL

[R] Help with cumsum function

2007-08-11 Thread Hectorman Hectorman
Hello! I have a question regarding the cumsum function that I do not know how to solve. Would appreciate help from someone. I have imported data from a txtfile with 2 columns. I am interested in the seconds column, which contains numbers from i=0 to 40. I would like to count the number of

Re: [R] shell and shell.exec on Windows

2007-08-11 Thread Erich Neuwirth
Thanks Gabor, system() indeed would be the answer, but it does not solve my problem because of some inconsistencies in WindowsXP. I will explain the story, because perhaps it can help somebody else to avoid wasting time. On my machine, when I doubleclick an .xlsm file, it is opened in Excel 2007.

Re: [R] Help with cumsum function

2007-08-11 Thread Uwe Ligges
Hectorman Hectorman wrote: Hello! I have a question regarding the cumsum function that I do not know how to solve. Would appreciate help from someone. I have imported data from a txtfile with 2 columns. I am interested in the seconds column, which contains numbers from i=0 to 40. I

[R] binomial simulation

2007-08-11 Thread sigalit mangut-leiba
hello, I asked about this simulation a few days ago, but still i can't get what i need. I have 2 units: icu and regular. from icu I want to take 200 observations from binomial distribution, when probability for disease is: p=0.6. from regular I want to take 300 observation with the same

[R] RServe

2007-08-11 Thread yoooooo
Hi all, is there a way to properly terminate Rserve instead of killing the process? I run Rserve in a linux box that serves my Java client.. I have a cronjob that runs Rserve every morning. However, I'm killing it at night manually for the moment. Is there a way, given host/port, I can run an R

Re: [R] RServe

2007-08-11 Thread Dirk Eddelbuettel
On 11 August 2007 at 11:00, yoo wrote: | Hi all, is there a way to properly terminate Rserve instead of killing the | process? I run Rserve in a linux box that serves my Java client.. I have a | cronjob that runs Rserve every morning. However, I'm killing it at night | manually for the

Re: [R] RServe

2007-08-11 Thread yoooooo
Yea, I found the shutdown function in the java interface as well.. but is there a way I can send a shutdown command through linux shell? (something that I can cron?) Thanks!! - yoo Dirk Eddelbuettel wrote: On 11 August 2007 at 11:00, yoo wrote: | Hi all, is there a way to

[R] Artifacts in pdf() of image()

2007-08-11 Thread Michael Kubovy
Dear r-helpers, I have two questions: (1) The following produces a pdf with artifacts. How do I prevent them? require(grDevices) imSize - 200 lambda - 10 theta - 15 sigma - 40 x - 1:imSize x0 - x / imSize -.5 freq = imSize/lambda# compute frequency from wavelength xf = x0

[R] Artifacts in pdf() of image() (w/o comments)

2007-08-11 Thread Michael Kubovy
Dear r-helpers, In my previous message there were comments in the code that may have made cutting and pasting awkward. Here it is w/o them. I have two questions: (1) The following produces a pdf with artifacts. How do I prevent them? require(grDevices) imSize - 200 lambda - 10 theta - 15

[R] xyplot() with segments() superposed?

2007-08-11 Thread Yuelin Li
In the hypothetical example below, how do I add two segments() into the two panels, respectively? Say segments(x0=5, y0=10, x1=5, y1=20) on the left and segments(x0=15, y0=-10, x1=15, y1=-2) on the right? Many thanks in advance, Yuelin Li. ps. part of the code came from a solution given by

[R] Replace NAs in dataframe: what am I doing wrong

2007-08-11 Thread Sébastien
Dear R-users, My script imports a dataset from a csv file, in which missing values are represented by .. This importation is done into a dataframe using the read.table function with na.strings = . Then I want to replace the NAs in the first column of the dataframe by Missing data. I am using

[R] R Weka and cobweb

2007-08-11 Thread adschai
Hi, I never use cobweb before and I'm quite new to this. I have a couple of questions around the cobweb implementation in R Weka. If you could supply answer or insight, I would really appreciate. 1. From Fisher's paper in 1987, it seems that Cobweb only deals with nominal data. In R Weka

Re: [R] Replace NAs in dataframe: what am I doing wrong

2007-08-11 Thread jim holtman
The problem is that the first column is probably a factor and you are trying to assign a value that is not already a 'level' in the factor. One way is to read the data with as.is=TRUE to keep it as character, replace the NAs and then convert back to factors if you want to: x -

Re: [R] shell and shell.exec on Windows

2007-08-11 Thread jim holtman
If you are using Windows, then try: system('cmd /c yourfile.xls') This will invoke the windows command processor and it should pick the correct association. On 8/11/07, Erich Neuwirth [EMAIL PROTECTED] wrote: Thanks Gabor, system() indeed would be the answer, but it does not solve my problem

Re: [R] Artifacts in pdf() of image()

2007-08-11 Thread Ben Bolker
Michael Kubovy kubovy at virginia.edu writes: Dear r-helpers, I have two questions: (1) The following produces a pdf with artifacts. How do I prevent them? You don't say what the artifacts are, but I suspect you're seeing the effects of anti-aliasing:

Re: [R] need help to manipulate function and time interval

2007-08-11 Thread Matthew Walker
Uwe Ligges wrote: Henrique Dallazuanna wrote: Hi, Try whit: if(time[j] = 18:00:00 23:59:59) This code is obviously wrong and does not help for the next few lines in the questioner's message, please do not post unsensible stuff. Uwe Ligges Actually, I would have said

[R] deldir package - voronoi

2007-08-11 Thread zubin
Hello! I am using the deldir package to visualize my data, pretty neat. However, i need to fill the colors using polycol =, fill with colors like a heatmap - more of a gradient fill. The only colors i get are very blocky - how do i assign the correct colors for a gradient, even a

Re: [R] Replace NAs in dataframe: what am I doing wrong

2007-08-11 Thread Sébastien
Thanks you very much Jim, As usual, your reply was very helpful (although I did not directly apply it). My dataset contains many columns, including numerous columns that I wanted to keep as factor. Instead of adding as.is = true at the readtable step, I am using the same philosophy but on a