at the
time the error occured. Maybe you see which object is already defined
and can derive the point of the error that way.
Uwe Ligges
Thanks,
-Luke
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PLEASE do read
if(!is.null(ylim))
height2 - c(range(ylim), rep(ylim[1], length(height) - 2))
.Internal(dend.window(n, merge, height2, hang, labels, ...))
Note that this quick hack is a *dirty* solution.
Uwe Ligges
Thanks in advance for any suggestions!
Ale iberna
hcd -
structure(list
Philippe Lamy wrote:
Hi,
I would like to create a multi-page postscript file. How can I do that in R ? Is
it possible ?
Yes, simply draw more than one plot. See ?postscript and its argument
onefile, which already defaults to TRUE.
Uwe Ligges
Thanks for help.
Philippe
is the default! You have to zoom in or make even thicker
lines. Hence you might want to try out the folowing to see differences:
x - 1:10
par(mfrow = c(1, 2))
plot(x, sin(x), type=l, lwd=10)
par(ljoin=mitre, lend=butt)
plot(x, sin(x), type=l, lwd=10)
Uwe Ligges
I run on a Windows XP
about encodings and characters at first. See the article
by Brian Ripley in the most recent issue of R News, for example.
Uwe Ligges
Thanks.
Josef Eschgfäller
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BJ wrote:
I searched the archives, but couldnt find any way to do this with
boxplot. Is there a way? Thanks again ~BJ
See ?boxplot and its argument par which points you to ?bxp:
Now, you can do stuff like
boxplot(1:10, pars=list(staplelty=0, whisklty=0))
Uwe Ligges
, whisklty=0), at=1:2)
works perfectly for me! People are not that happy to invest their time
for helping you on bad specified problems...
*REALLY*:
PLEASE do read the posting guide!
http://www.R-project.org/posting-guide.html
Uwe Ligges
~BJ
Uwe Ligges wrote:
BJ wrote:
I searched the archives
in Sections 3.1.9 Checking the build and 5.1
Installing packages of R-2.1.0's R Installation and Administration
manual.
Uwe Ligges
Thanks,
Roger
On 5/25/05, Uwe Ligges [EMAIL PROTECTED] wrote:
Suresh Krishna wrote:
it is the first link if you type making packages into the google
search box
This is a VERY special question. Please redirect your question to the
appropriate mailing list. See
http://mailman.csd.univie.ac.at/mailman/listinfo/rcom-l
for more information.
Uwe Ligges
Constant Depièreux wrote:
Dear All,
I am experiencing a problem for which I need some help.
I have
this
information.'
Uwe Ligges
AC wrote:
Hello all. I am trying to run PAN, multilevel
multiple imputation program, in R to impute missing
data in a longitudinal dataset. I could successfully
run the multiple imputation when I only imputed one
variable. However, when I tried to impute a
time
(table(x == TRUE ) ]
(== TRUE) can ALWAYS be omitted, see also:
library(fortunes)
fortune(TRUE)
x == max(x) should be replaced by which.max(x)
as.logical() is superfluous
Hence we get:
names(which.max(table(x)))
Uwe Ligges
(The length of x will always be an odd number, so I wont get
Can you please specify a small reproducible example?
Uwe Ligges
Prof J C Nash wrote:
I appear to have hit one of the drop issues raised in some discussions
a couple of years ago by Frank Harrell. They don't seem to have been
fixed, and I'm under some pressure to get a quick solution
Some example code using segments():
x - 1:10
low - rnorm(10)
high - rnorm(10)
plot(x, low, ylim = range(c(low, high)), type=n)
segments(x, low, x, high)
Uwe Ligges
Bret Collier wrote:
R Users,
I have not been able to find anything close to what I want searching
R-help and I am hoping
=length(filenames))
names(dataframes) - filenames
for(i in filenames){
channel - odbcConnectExcel(i)
dataframes[[i]] - sqlFetch(channel, sheet)
close(channel)
}
Uwe Ligges
Thanks in advance for any help.
Dave
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Amir Safari wrote:
Dear All ,
How it is possible to trace a plot in a two dimension surface with more than 2
variables?
Do you want a surface or a point cloud? Do you want to use some sort of
projection? What is more than 2?
Please specify your question more precisely.
Uwe Ligges
. grep) which are not available on all
platforms.
From my point of view the R way is to save the state into R objects
(e.g. a vector of status codes with one element for each R script).
Then you can easily use R functions to claculate on those objects.
Uwe Ligges
I create a master R script
might want to look into the R
Administration and Installation manual as well which descibes how to
collect and set up the required tools...
Uwe Ligges
But of course, I have misplaced the link. Does anyone still have
that, please?
It was someone from the University of Chicago, I believe
the last two examples by Martin Maechler in
# CRAN package scatterplot3d:
library(scatterplot3d)
?scatterplot3d
example(scatterplot3d)
Uwe Ligges
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PLEASE do read
2005.04.14
15:38
last.dumplist list 81186 2005.05.12
11:57
How can one obtain something similar with R ? [ R 2.1.0 / windows
2000 ]
You cannot. Objects in R do not have any timestamp attributes.
Uwe Ligges
cheers
] 0.1784625 -0.1924954 0.8505186
Uwe Ligges
Best Regards
Jim
--
This e-mail and any attachment may be confidential and may also be privileged.
If you are not the intended recipient, please notify us immediately
MASS)? What is
data? Why is there a ;?
Because of my first two questions, this code is NOT reproducible - the
posting guide asks you to specify reproducible examples.
Uwe Ligges
Thanks
Sabine
-
ils, photos et vidéos !
[[alternative
of ==, and without having to
reimplement the operations in a slow way?
The R FAQ Why doesn't R think these numbers are equal? points you to
?all.equal
Uwe Ligges
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/ authors would have been a better idea
for such a specialized question.
Uwe Ligges
BTW: You might want to try out the new CRAN package BRugs, which
provides an interface to the (included) OpenBUGS (the next version of
WinBUGS). Currenty, it only works on Windows, though.
Li, Jia
Frank E Harrell Jr wrote:
Uwe Ligges wrote:
Aric Gregson wrote:
On 5/17/05 21:44 Frank E Harrell Jr sent the following:
Aric Gregson wrote:
Hello,
I am trying to use the following to output a table to latex:
cohortbyagesummary - by(data.frame(age,ethnicity), cohort, summary)
w
not seem to be the R way - and it is very confusing to read
code that refers to a couple of different environments ...
Uwe Ligges
After re-reading the available docs (which I may have misunderstood...),
I come to the following conclusions :
- The package creation is the most elegant
, Ontario
Canada L8S 4M4
905-525-9140x23604
http://socserv.mcmaster.ca/jfox
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Uwe Ligges
Sent: Thursday, May 19, 2005 10:08 AM
To: Chalasani, Prasad
Cc: r-help@stat.math.ethz.ch
correctly.
Is there a simple way to rotate the labels?
For axis labels see ?par and its argument las.
Uwe Ligges
Best regards,
Sebastian
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PLEASE do read the posting guide! http
, xlab=)
## clipping to device region rather than plot region:
par(xpd=NA)
legend(mean(par(usr)[1:2]), 0,
legend=nonsense, xjust=0.5)
Uwe Ligges
Ravi Vishnu
This message is meant for the addressee only and may contain
confidential and legally privileged information. Any unauthorised
Ben Bolker wrote:
[snip snip snip snip]
How about strict option that could be set to
disallow use of T/F variables?
I had a student run into trouble fairly recently (although can't
at the moment provide a reproducible example using T as a
variable in a formula that was passed to nls() ... I
[EMAIL PROTECTED] wrote:
Anyone know where I can reach the author of the compareGrowthCurves function?
Which package are we talking about? I guess statmod, but please
indicate this!
For sure you have tried the address (in CC) you can find in
library(help=statmod)
Uwe Ligges
I'm having
(and only?) column or read the data using
scan(), if there is really only one column.
Uwe Ligges
I get:
Error in as.double.default(read.table(logDJIm.TXT, header = FALSE,
sep = , :
(list) object cannot be coerced to 'double'
and when I try to plot:
plot(density(retr, width=.004), type=l
) / median(t$y[i], na.rm=TRUE)
Uwe Ligges
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Alex K wrote:
On 5/20/05, Uwe Ligges [EMAIL PROTECTED] wrote:
Alex K wrote:
Hello,
I am very new to R, and this is certainly and uber-newby question:
I am trying to read a vector of numeric data that contains the log
of daily DJI returns and simply plot a histogram of it.
The data I have
are going to include the plot in?
Uwe Ligges
Best regards,
Jacques VESLOT
Paul Murrell a écrit :
Hi
Jacques VESLOT wrote:
Dear R-users,
Someone, who uses R under Mac, wants to insert a couple of small
plots (each with several lines) in an article, but he has to reduce
plots' size significantly. He
just opened R, and haven't used anything yet, how come did it say package
splines is in use?
library(survival) told you that it loaded the required package
splines. So it *is* in use.
Uwe Ligges
Thanks
Jia
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Chalasani, Prasad wrote:
Thanks all for pointing out that I can use
mtx[,1,drop=F]
Which, for example, won't work for
F - 10.25
--- drop=FALSE !
^
Uwe Ligges
-Original Message-
From: Uwe Ligges [mailto:[EMAIL PROTECTED]
Sent: Thursday, May 19, 2005 10:49 AM
wonder whether there is, or should be, a way to set FALSE as the default?
First question: No.
Second question: No, because *many* functions do rely on the fact that
x[,1] returns a vector rather than a matrix.
Uwe Ligges
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!
By vectorization:
tcn5[tcn5 == -9] - NA
Uwe Ligges
Anders Corr
for(i in 1:dim(tcn5)[2]){ ##for the number of columns
+ for(n in 1:dim(tcn5)[1]){ ##for the number of rows
+ tcn5[is.na(tcn5[n,i]) | tcn5[n,i] == -9] - NA
file?
Anyway, you might want to give the CRAN package R2WinBUGS a try, which
is based on Andrew's code known as bugs.R.
There is also a developer version BRugs (an interface to OpenBUGS)
available at http://www.statistik.uni-dortmund.de/~ligges/BRugs/ (will
move to CRAN very soon now).
Uwe Ligges
R2WinBUGS you are looking for has been
made available - thanks to Andrew's effort in writing the original code
and thanks to the efforts of two others to generalize the code and
package it for you.
Uwe Ligges
Jiaa
_
# R code
is of up to 21 connections (20 diversions).
If you did not forget to close the connection, please send an easily
reproducible example.
Uwe Ligges
thanking you
anubhav
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also the more detailed help page ?Memory.
My recommendation is: Buy a 512 Mb module for a few $, 256Mb is really
not much these days.
Hmm, my 4.5 year old laptop already has 256Mb (cannot be increased - and
this is the only point why I am looking fo a new one).
Uwe Ligges
Thank you.
Dimitri
Amir Safari wrote:
Hi All,
Can some body tell what means Best Sample in clustering using Clara?
?clara.object tells you:
sample: labels or case numbers of the observations
in the best sample, that is, the sample used by the
clara algorithm for the final partition.
Uwe Ligges
photo and you have sent me at least 10,000$.
Uwe Ligges
Don Alexander wrote:
Do you consider yourself a cutting edge statistical expert with a penchant
for applying your broad theoretical background to solving some of the most
complex statistical challenges facing human health today? Does the idea
to understand what generates the warning!
Yes! In both cases you should really look why you are using *conditions
of length 1*! And if this is intended, you certainly want to use
ifelse() rather than if(){} else{}.
Uwe Ligges
To assure you are uninformed, say
options(warn=-1)
Kjetil
- optim(par=c(-1,1),
fn =fun,
method = c(L-BFGS-B),
control=c(trace=6)
)
For example, you can sink() temorarily into a file and extract the
relevant lines (beginning with X = ) afterwards.
Uwe Ligges
# what I would need to save
[...]
X = -0.292893 0.292893
[...]
X
membership for all the
clusters, how is it that I have a closest hard clustering? and a
neighbor?
Can you speicfy a reproducible examples, please?
Without an example, it is really hard to explain what happens...
Uwe Ligges
Thank you in advance,
Barbara
dev.print and insert dev.off()
[BTW: your code is almost unreadable, please try to format it before
posting, and please read documentation on devices]
Uwe Ligges
As you can see, I need a special par(mar) to make room for the margin text
(mtext).
When I run this program through a batch file I get
are not optimal.
How can I save pictures (colors/resolution) optimally for import into
CorelDraw for an A0 poster?
Pdf?/tiff?/bmp?/
What about PostScript? It's perfectly resizable and CorelDraw (at least
the outdated version 10) can deal with it.
Uwe Ligges
Thanks,
Jan
really handle those matrices separately, either by getting
them from a database or by saving them in form of separate Rdata objects.
Uwe Ligges
Any help is greatly appreciated.
Niall Fitzgerald
Phd Candidate.
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https
Barry Rowlingson wrote:
BUT, when I stick this in a loop, I get a bunch of blank graphics
devices. This happens even if the loop only executes once. I could
just go through and do these one by one, but I was curious if I was
overlooking something obvious. Thank you for any advice.
You're
not
(but could have been).
Probably you want
list.files(pattern = \\.zip$, full.names = TRUE)
Uwe Ligges
Steve.
Dr Steve Roberts
[EMAIL PROTECTED]
Senior Lecturer in Medical Statistics,
CMMCH NHS Trust and University of Manchester Biostatistics Group,
0161 275 5192/5764 / 0161 276 5785
that
.txt also finds Not_a_txt_file.xls
Uwe Ligges
-s.
Uwe Ligges wrote:
Steve Roberts wrote:
R2.0.1 (MS Windows)
list.files(myloc,*.zip,full=T)
[1] P:/SARsoftware/Rlibraries/gnlm_0.1.zip
[2] P:/SARsoftware/Rlibraries/lms2_0.2.zip
R2.1.0:
list.files(myloc,*.zip,full=T)
Error in list.files
, all.files, full.names, recursive) :
invalid 'pattern' regular expression
Bug? or have I missed something
That has something to do with regexpr, try someting like :
list.files(myloc,*.zip,full=T)
Which also finds the file unzip.exe.
Please, folks, do read about regular expressions!
Uwe
of formulas you have to use I() in order to do these
calculations:
plot(column ~ I(1-column))
or plot() will simply plot against the index (column ~ 1) and ignores
the unsensible last part -column.
Uwe Ligges
plot(column~as.vector(1-column))
Thanks for checking!
U
this is done
efficiently?
Thanks a lot in advance!
Georg
P.S. I am in digest mode, cc'ing the answer directly to me would be nice
Is y and environment?
Please make your example reproducible - as long as I have not seen your
example, I guess you don't want to use mget() at all ...
Uwe Ligges
long long long.',
'Very long.',
'-server smtp.host.com -base64'))
Uwe Ligges
In R, if everything beginning with blat is not on the same line, the command
does not work properly and everthing on the second line is not considered
even thought he paste command ends with a )
Thanks
Darren Weber wrote:
Has anyone compiled a binary for winXP, with python2.4 and R.2.1.0?
If anyone can do this soon, please advise how to pick up the binary
installer.
The Rpy homepage is http://rpy.sourceforge.net/
What about asking on the mailing list given on that page?
Uwe Ligges
Best
the notes in the pdf indicate the following:
D - k^2 * ( mean(S) - mean(diag(S)) )^2
Can you please consider this and advise the correct calculation?
Both are equal! Mathematical calculations you should really know from
school show that
(a - b)^2 = (b - a)^2
.
Uwe Ligges
Best, Darren
appropriate environments.
Uwe Ligges
Thanks,
Thibaut Jombart
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)
Uwe Ligges
This seems a bit odd. Is there a nicer way?
/Fredrik
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the
variables are holding for my filename, e.g.:
jpeg(file=d:/data/images/jz.jpeg,...)
If j contains the name for the file,
jpeg(file=j, ...)
should work. I guess you do not have jpeg support if calling your script
in non-interactive mode, because you need X11 active. See ?jpeg.
Uwe Ligges
i
to my configuration (of R or of
Windows) or is it a bug?
This is a bug that has been fixed in R-patched.
Uwe Ligges
R: version 2.1.0 patched (2005-04-18)
Operating system: Windows XP (German)
*
Dr. Dirk Enzmann
Institute of Criminal Sciences
Dept
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
See ?cut, if you mean something different, please be much more specific
in your question.
Uwe Ligges
to be the wrong way with unequal line lengths.
Uwe Ligges
I would be very grateful for your help!
Michael Graber
[EMAIL PROTECTED]
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PLEASE do read the posting guide
Robin Hankin wrote:
Hi
I have an application where my difficulty boils down to not
being able to define a function f() with the following properties:
f(sin,0:2,x) #returns sin(x+0) + sin(x+1) + sin(x+2)
f(c(sin,cos), 1:2,x) #returns sin(x+1) + cos(x+2)
f(c(sin,cos,exp),3,x)
, length = l)
else if(l li) int - rep(int, length = l)
values - mapply(function(foo, int)
do.call(foo, list(x+int)), foo, int)
return(rowSums(values))
}
Uwe
best wishes
Robin
On May 9, 2005, at 08:34 am, Uwe Ligges wrote:
Robin Hankin wrote:
Hi
I have an application where my
, read the psoting guide and specify the example).
Uwe Ligges
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left.
Uwe Ligges
(OS is Windows XP Pro)
Thanks.
FS
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, but with linear models.
Probably you don't have enough observations in order to estimate those
coefficients. Please read some statistical textbook on the topic of
degrees of freedom in linear models and regression analysis.
Uwe Ligges
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if this is a rather silly thing to do, and if I should keep my own build separate from the Debian stuff. Any advice would be much appreciated.
Yes, simply install to another directory, e.g. by telling configure:
./configure --prefix=/I/want/to/have/R/installed/here
Uwe Ligges
Thanks,
R.
--
Ramn Daz-Uriarte
)
text(x,y,as.character(x),pos=4)
How do I do that?
What about
paste(formatC(x, 1, format=f), %, sep=)
given x is scaled in percent, of course.
Uwe Ligges
Thanks
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PLEASE
(x)
(is.na(x$date1[1]) !is.na(x$date2[1])))
ctr - sum(temp) # and sum that vector
Uwe Ligges
But I don't think that's working correctly.
Thanks,
Steven
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PLEASE
See ?reshape
Uwe Ligges
Achaz von Hardenberg wrote:
Hi,
I have a data.frame which looks like this:
id est0 est1 est2 est3 est4 est5 est6est7
1 1 2 3 1 7 9 3 4
2 4 1 1 7 6 5 1 2
[...]
I would like to reorder it to obtain the following:
id est VALUE
1 0 1
?
See ?try
Uwe Ligges
Thanks,
Dimitri
[[alternative HTML version deleted]]
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(newmat, origmat[i,])
}
What about vectorizing the stuff?
index - is.na(origmat[ ,10]) |
(!is.na(origmat[ ,10])
(origmat[ ,2] = origmat[ ,10]))
newmat - origmat[index,]
Uwe Ligges
Thanks,
Steven
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mingan wrote:
Is there a way for me to get the source code ( C/C++ or FORTRAN) for a
specific R package ?
Well, it is *included* in the (source) package...
???
Uwe Ligges
thanks
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:
There is no package 'gdata' simply means the package is not there...
So what about installing it?
Hint: it is part of the package bundle gregmisc.
Uwe Ligges
Thanks,
Edwin
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PLEASE
coded paths etc...
Uwe Ligges
Thanks in advance
Kevin
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PLEASE do read
Constantinos Antoniou wrote:
On 4 2005, at 11:35 , Uwe Ligges wrote:
Eduwin Pakpahan wrote:
Dear R users, I did install R. 2.0.1, and try to load gap package.
However, below is the message shown when I did load it. Can anybody
please let me know my mistakes?
library()
library(gap)
Loading
the
winners of the John Chambers Statistical Software Award are unable to
help if you don't say what the error messages are and which versions of
JGR you tried...
Uwe Ligges
Best wishes
Christoph
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is syntacically completely incorrect (even if
you say something would work, which is definitely not the case)!
PLEASE do read the posting guide!
I guess you want something like
d - data.frame(a = 1:10, b = 11:20)
subset(d, b == 17)
e - c(13, 15, 17)
subset(d, b %in% e)
Uwe Ligges
What
mingan wrote:
how do I check the rank of a matrix ?
say
A= 1 0 0
0 1 0
then rank(A)=2
what is this function?
Well, calculating the rank is from the computational point of view a
very hard problem.
See ?qr
Uwe Ligges
thanks
I did try help.search(rank), but all the returned help
!
It is recommended to use the new version of RWinEdt (1.7-1) together
with RGui in SDI mode (which should work with arbitrary translations).
Further on, only english versions of RGui in MDI mode are supported by
RWinEdt.
Uwe Ligges
___
R-packages
it too
small, the test may fail
when executed on a machine with different architecture from mine.
How do I deal with this?
See ?all.equal
Uwe Ligges
--
Robin Hankin
Uncertainty Analyst
Southampton Oceanography Centre
European Way, Southampton SO14 3ZH, UK
tel 023-8059-7743
Robin Hankin wrote:
On Apr 29, 2005, at 11:51 am, Uwe Ligges wrote:
Robin Hankin wrote:
[snip]
The tolerance should be as small as possible, but If I make it too
small, the test may fail
when executed on a machine with different architecture from mine.
How do I deal with this?
See ?all.equal
. And you can write Makefiles in order to process automatically.
Uwe Ligges
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\documentclass statement and the
like?
thanks in advance, ingmar
On 4/29/05 7:48 AM, Uwe Ligges [EMAIL PROTECTED] wrote:
Ingmar Visser wrote:
Hi all,
I'm writing a vignette for my package, and I would like to include some of
the package help files in there as well. Is there an easy way of doing so
avneet singh wrote:
i got the first part:
agm.data$ProdCategory=as.factor(agm.data$ProdCategory)
the second i am still struggling with
For the second part, see ?is.na.
Uwe Ligges
On 4/26/05, avneet singh [EMAIL PROTECTED] wrote:
I have 2 questions. In essence i am trying to create product
-2.1.0 gives not only
suggestions: it provides all the details on the tools required! The
manual Writing R Extensions is relevant as well.
Uwe Ligges
Thanks
__
[[alternative HTML version deleted
programming, the manuals, R News, and the
following help pages:
?traceback
?debug
?recover
?browser
and other relevant pages these pages are pointing to.
Uwe Ligges
Jarek
=\
Jarek Tuszynski, PhD. o / \
Science
Paul Smith wrote:
Dear All
I would like to draw a picture with the density curve of a normal
distribution over a histogram of a set of random numbers extracted
from the same normal distribution. Is that possible?
Yes.
If you like to know how, see e.g. ?hist and ?curve.
Uew Ligges
Thanks in
some function (e.g. using
regular expressions) to detect what is numeric and what not (e.g.
03/15/200523:56:03), replace the latter by NA and convert to numeric.
Uwe
--Rich
Richard Kittler
AMD TDG
408-749-4099
-Original Message-
From: Uwe Ligges [mailto:[EMAIL PROTECTED]
Sent
Dom Peters wrote:
Dear All,
This is a rather simple question.
How do I open more than 1 graphics window?
See ?x11
Uwe Ligges
Dom
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not to be supported.
See http://www.sciviews.org/_rgui/projects/Editors.html
The page tells us that there is support for Crimson editor.
Uwe Ligges
Thanks for any advice
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Liaw, Andy wrote:
One suggestion: After you break the check process, look at the file
C:\Gregor\devel\GeneticsPed\GeneticsPed.Rcheck\GeneticsPed-Ex.R
and try to see if you can run that in batch mode.
You can also look into GeneticsPed-Ex.Rout that tells you where the
stuff hangs.
Uwe
Andy
the last few years, each major release was followed by one minor
(bug-fix) release after roughly one month.
Uwe Ligges
I suppose Debian packages of base R are updated accordingly to R patches,
aren't they?
Thanks in advance!
--
Lep pozdrav / With regards,
Gregor Gorjanc
guide ask to
do so anyway)?
Uwe Ligges
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)
No help files found with alias or concept or title matching
'RSiteSearch' using fuzzy matching.
So you should try out the recent version of R (2.1.0), which contains
RSiteSearch in package utils.
Uwe Ligges
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the
columns as character and convert them to numeric afterward.
I think you have to read it in as character - or write your own C-level
facility...
Uwe Ligges
--Rich
Richard Kittler
AMD TDG
408-749-4099
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