Dear list,
I use SciViews R Console 0.8.9 with R-2.2.1 under Windows XP SP2, and
it works very well for most of time. However, sometimes, when
commands were executed by clicking F5, the error "Run-time error 521,
Can't open clipboard" pop out. After choosing "Yes", the both R
console and SciView
Dear list,
I installed odesolve package (0.5-15) in R 2.3.1 in a Solaris server
(Generic_118558-11 sun4u sparc SUNW,Sun-Blade-1000). The installing
progress completed without errors, though several warnings like
"Warning: Option -fPIC passed to ld, if ld is invoked, ignored
otherwise" were output
Dear list,
In some places (for example,
http://en.wikipedia.org/wiki/Support_vector_machine) , the polynomail
kernel in SVM is written as (u'*v + 1)^d, while in the document of
svm() in e1071 package, the polynomial kernel is written as
(gamma*u'*v + coef0)^d. I am a little confused here:
When d
2006 08:51:21 +0200, Peter Dalgaard <[EMAIL PROTECTED]> wrote:
> "Wuming Gong" <[EMAIL PROTECTED]> writes:
>
> > Dear Peter,
> >
> > $ uname -a
> > Linux bl3 2.6.15-1.1833_FC4smp #1 SMP Wed Mar 1 23:55:52 EST 2006
> > x86_64 x86_64 x86_64 GNU/L
Dear Peter,
$ uname -a
Linux bl3 2.6.15-1.1833_FC4smp #1 SMP Wed Mar 1 23:55:52 EST 2006
x86_64 x86_64 x86_64 GNU/Linux
When ./configure, I did not claim any options...
Wuming
On 01 May 2006 19:30:48 +0200, Peter Dalgaard <[EMAIL PROTECTED]> wrote:
> "Wuming Gong" <[EM
Dear list,
When compiling the R-2.3.0 on FC4 x86_64, I got the following errors:
make[3]: Entering directory
`/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main'
gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o
CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o
ari
Dear list,
Given a vector of logical values, say
>a <- c(TRUE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE)
Are there any R functions that can tell whether there are two or more
"TRUE" in a row in this vector?
Thanks,
Wuming
__
R-help@stat.math.
Dear list,
This question is about Hidden Markov Model. Given a transition
matrix, an emission matrix and a sequence of observed symbols
(actually, nucleotide sequences, A, T, C and G), I hope to predict the
sequence of state by Viterbi algorithm. I searched R repository for
related packages. ms
Try trim() in gdata package.
Wuming
On 10/25/05, roger bos <[EMAIL PROTECTED]> wrote:
> for example:
> > a$tic[1:10]
> [1] "AIR " "ABCB " "ABXA " "ACMR " "ADCT " "ADEX "
> [7] "ABM " "AFCE " "AG " "ATG "
> Can anyone please tell me how to strip the white spaces from a$tic?
> Thanks,
> Roger
>
lt;=.05||coe[4]<=.05||coe[5]<=.05) {
> cat("phenotype is = ",x[j] , "\n")
> cat("snp marker is = ",x[i] , "\n")
> sign<-call("fstatistic",zz)
> call("p-value",zz)
>
>#print(coe)
>print(zz
?summary.lm and check the Value section.
Wuming
On 9/10/05, Ping Yao <[EMAIL PROTECTED]> wrote:
> Hi:
> I use lm (linear model) to analyze 47 variables , 8 responses
> So I use loop to finish it .
> I want the program to show the results that P-value is less than 0.05.
> How can I cite the P-valu
Dear list,
Please ignore this thread - the "TOO LONG TO DISPLAY" is brought by
another tool when parsing data sets. Sorry for this ...
Wuming
On 9/8/05, Wuming Gong <[EMAIL PROTECTED]> wrote:
> Dear list,
>
> I used read.xls in gdata package to read a worksheet
Dear list,
I used read.xls in gdata package to read a worksheet in which certain
field contains very long character strings (nucleotides sequence,
nchar > 10,000). Then, the values in these fields are automatically
converted to "TOO LONG TO DISPLAY". How can I get those original
characters instea
Dear list,
I have a problem on calculating the standard error of
Goodman-Kurskal's gamma using delta method. I exactly follow the
method and forumla described in Problem 3.27 of Alan Agresti's
Categorical Data Analysis (2nd edition). The data I used is also from
the job satisfaction vs. income ex
>
> > On 08/31/05 17:46, Wuming Gong wrote:
> > > Dear list,
> > >
> > > Are there any functions for calculating gamma (and its standard
> > > error), which measures the association of ordinal factors in I x J
> > > contingency table. I did a R
Dear list,
Are there any functions for calculating gamma (and its standard
error), which measures the association of ordinal factors in I x J
contingency table. I did a RSiteSearch but did not find any clues...
Thanks,
Wuming
__
R-help@stat.math.ethz
Hi Haibo,
Are there any character "#" in the cells? By default, the things at
the right side of the character "#" will be masked as comments.
Wuming
On 8/2/05, Gabor Grothendieck <[EMAIL PROTECTED]> wrote:
> On 8/1/05, Haibo Huang <[EMAIL PROTECTED]> wrote:
> > Hi, when I used:
> >
> > Dist=read
Hi,
I have a question about interpret the results from logistic regression
model. I used a dataset from the book Categorical Data Analysis (2nd
Edition) by Alan Agresti.
> summary(crabs)
color spine width satell weightpsat
2:12 1: 37 Min. :21.0
Hi Veronika,
StepAIC does not do any test. But you may do a likelihood ratio test
on the difference between deviance of two models to judge which model
to use, simply like this,
> 1 - pchisq(deviance.i - deviance.j, df.i - df.j)
And then check whether the returned p value is small enough...
Wu
Hi Koskinen
For response variables with multiple categories, you may try polr() in
MASS package, which implement a proportional odds model. And you may
search the R archives, several threads discussed this problem
before...
Wuming
On 6/15/05, Ville Koskinen <[EMAIL PROTECTED]> wrote:
> Dear all
Hi Stephen,
I think the tutorial written by Brett Presnell
(http://web.stat.ufl.edu/~presnell/Teaching/sta4504-2000sp/R/) is a
good start point for categorical data analysis using R.
Wuming
On 6/10/05, Stephen Choularton <[EMAIL PROTECTED]> wrote:
> Hi
>
> I am using R for logistic regression a
You may check the chapter 8 Probability distributions in An Introduction to R.
Wuming
On 5/22/05, Hu Chen <[EMAIL PROTECTED]> wrote:
> for example,
> >x <- read.table(); here x is a vector containing my data to be
> >analyzed.
> >hist(x,plot=TRUE,breaks=200)
>
> then I got a histogram gra
You may fit the model using lm() directly - R will set up a coding for
qualitative predictor automatically (taking experiments as qualitative
predictor).
HTH
Wuming
On 5/18/05, 孟欣 <[EMAIL PROTECTED]> wrote:
> Hello sir:
> Here's a question on covariance analysis which needs your help.
> There'r
See ?write.table
Wuming
On 5/17/05, BJ <[EMAIL PROTECTED]> wrote:
> How do you output a list to a text file without the extra line numbers
> and stuff?
>
> I have a list b, and tried
>
> zz<-textConnection("captest.txt","w")
> sink(zz)
> b
> sink()
> close(zz)
>
> but that isnt what i want, b
Hi list,
I have a group of data. It looks like they follow a exponential
distribution. In R, how can I esimate lamda, that is the rate in pexp,
of the distribution and can I use Kolmogorov-Smirnov for hypothesis
testing in such a situation? I have read the "8.2 Examing the
distribution of a set o
Hi list,
I have read the mannual of package graph, but it looks that three
functions randomEGraph, randomGraph and randomNodeGraph cannot generate
a random network with given cluster coefficient.
Is there any exisiting R package for such kind job and if no, how can I
perform this job with existi
Hi list,
I have read the mannual of package graph, but it looks that three
functions randomEGraph, randomGraph and randomNodeGraph cannot generate
a random network with given cluster coefficient.
Is there any exisiting R package for such kind job and if no, how can I
perform this job with existi
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