I have the exact same problem as you had when I customerized some
package: the way I go around this is using
install.packages(~/Documents/projects/R_customerized_packages/supclust_1.0-5.tar.gz,
repos=NULL, type=source)
in which supclust_... is built from
R CMD build supclust
and in your case,
Dear,
I'm not getting Installing packages:
install.packages(c(exactRankTests))
trying URL `http://cran.r-project.org/bin/windows/contrib/2.0/PACKAGES'
Content type `text/plain' length 26129 bytes
opened URL
downloaded 25Kb
trying URL `http://cran.r-
require(exactRankTests)
--
Henrique Dallazuanna
Curitiba-Paraná-Brasil
25° 25' 40 S 49° 16' 22 O
On 29/06/07, Marcus Vinicius [EMAIL PROTECTED] wrote:
Dear,
I'm not getting Installing packages:
install.packages(c(exactRankTests))
trying URL
Marcus Vinicius wrote:
Dear,
I'm not getting Installing packages:
install.packages(c(exactRankTests))
trying URL `http://cran.r-project.org/bin/windows/contrib/2.0/PACKAGES'
Content type `text/plain' length 26129 bytes
opened URL
downloaded 25Kb
This means you are using R-2.0.x?
hie
how do l install R packages .L'm using windows xp.plus is there a dipository
for the packages that one can browse to find out what packages are available.
thanks.
-
Be a PS3 game guru.
[[alternative HTML version deleted]]
Menu Packages Install Packages
works well for me.
--- raymond chiruka [EMAIL PROTECTED] wrote:
hie
how do l install R packages .L'm using windows
xp.plus is there a dipository for the packages that
one can browse to find out what packages are
available.
thanks.
-help@stat.math.ethz.ch
Subject: Re: [R] Installing packages from command line on Linux RHEL4
Hi Kernit,
On 21 May 2007 at 11:37, Kermit Short wrote:
| Greetings.
|
|I am a System Administrator, and thus have very little knowledge of R
| itself. I have been asked to install a list
Greetings.
I am a System Administrator, and thus have very little knowledge of R
itself. I have been asked to install a list of some 200 packages (from
CRAM) to R. Rather than installing each package manually, I was hoping I
could script this. I've written a BASH script that hopefully will
to
accomplish the same thing using the
R CMD INSTALL
Shell command?
Thanks!
-Kermit
-Original Message-
From: Dirk Eddelbuettel [mailto:[EMAIL PROTECTED]
Sent: Monday, May 21, 2007 12:00 PM
To: [EMAIL PROTECTED]
Cc: r-help@stat.math.ethz.ch
Subject: Re: [R] Installing packages from
Hi Kernit,
On 21 May 2007 at 11:37, Kermit Short wrote:
| Greetings.
|
|I am a System Administrator, and thus have very little knowledge of R
| itself. I have been asked to install a list of some 200 packages (from
| CRAM) to R. Rather than installing each package manually, I was hoping I
Kermit,
On 21 May 2007 at 12:05, Kermit Short wrote:
| Dirk-
| Many thanks for your reply. As I mentioned, I know very little
| about programming in 'R' and what I've got is a BASH script. If needs be,
| I'll look up how to read in a text file through R and add that into your
| script in
Opening R by right clicking and choosing run as administrator' worked. Was
able to run install packages without a problem. I have not tested the other
methods suggested. thank you.
Dan O'Shea
-- Original message --
From: Duncan Murdoch [EMAIL PROTECTED]
On
]
Sent: Wednesday, February 07, 2007 9:49 AM
To: Duncan Murdoch; [EMAIL PROTECTED]
Cc: r-help@stat.math.ethz.ch
Subject: Re: [R] installing packages and windows vista
Opening R by right clicking and choosing run as administrator' worked. Was
able to run install packages without a problem. I have
I installed R (R-2.4.1-win32.exe) on a new computer with Windows Vista
and a 64 bit operating system (hp dv9000 with intel core t7200). The
base R runs fine, but I can not get any of the packages to load. From
within R I choose install packages choose a site then a package. I
tried installing
On 2/6/2007 10:33 AM, Daniel O'Shea wrote:
I installed R (R-2.4.1-win32.exe) on a new computer with Windows Vista
and a 64 bit operating system (hp dv9000 with intel core t7200). The
base R runs fine, but I can not get any of the packages to load. From
within R I choose install packages
Daniel O'Shea wrote:
I installed R (R-2.4.1-win32.exe) on a new computer with Windows Vista
and a 64 bit operating system (hp dv9000 with intel core t7200). The
base R runs fine, but I can not get any of the packages to load. From
within R I choose install packages choose a site then a
Hi,
I am a total newbie to R. I am using R (2.4.1) on Mac OS X 10.4.8 and
trying to install some packages using GUI Packages Data/Package Installer
interface...
Every time I get:
trying URL
'http://umfragen.sowi.uni-mainz.de/CRAN/bin/macosx/universal/contrib/2.4/neural_1.4.1.tgz'
Content type
well, i don't use RGui, but trying:
install.packages(neural, type=source) ## from the R command line
i could not reproduce the error (which may be a problem with the copy
on the mirror you're using)...
b
On Jan 23, 2007, at 3:09 PM, Nüzhet Dalfes wrote:
Hi,
I am a total newbie to R. I am
2007/1/23, Nüzhet Dalfes [EMAIL PROTECTED]:
Hi,
I am a total newbie to R. I am using R (2.4.1) on Mac OS X 10.4.8 and
trying to install some packages using GUI Packages Data/Package
Installer
interface...
Every time I get:
trying URL
'
why not just type in console:
install.packages(neural)
and see what happens.
On 1/23/07, Nüzhet Dalfes [EMAIL PROTECTED] wrote:
Hi,
I am a total newbie to R. I am using R (2.4.1) on Mac OS X 10.4.8 and
trying to install some packages using GUI Packages Data/Package Installer
interface...
On 24/01/2007, at 7:09 AM, Nüzhet Dalfes wrote:
Hi,
I am a total newbie to R. I am using R (2.4.1) on Mac OS X 10.4.8 and
trying to install some packages using GUI Packages Data/Package
Installer
interface...
Every time I get:
trying URL
Hi,
I have a problem with installing packages without being a superuser(root) in
Linux(Suse 10.0 64bit). I've read the entire FAQ and R-admin but I couldn't
find a solution to my problem. I'm the admin of the computer but I want other
users to install whatever packages they want. Do you think
How about try:
R CMD INSTALL -l R_pkg_lib R_pkg
ahmet rasit wrote:
Hi,
I have a problem with installing packages without being a superuser(root) in
Linux(Suse 10.0 64bit). I've read the entire FAQ and R-admin but I couldn't
find a solution to my problem. I'm the admin of the computer but I
Dear all,
I'm working on MAC OS X 10.4.7 using R version 2.3.1 (June 2006)
and platform powerpc-apple-darwin8.6.0. Since I installed the new
version of R I cannot install packages any more (but it worked fine
before) and get the following message every time. I can, however,
install
Are you trying to install a package from source?
Try adding type='source' when you call install.packages().
The help page for install.packages() indicates the need for this on a Mac.
You might also check and see if ~/libs exists, and you have write
privileges, but take care of the source vs.
Hi Don,
type=source solved the problem.
Thanks very much for your help,
best,
Snaebjorn
On Sep 21, 2006, at 3:59 PM, Don MacQueen wrote:
Are you trying to install a package from source?
Try adding type='source' when you call install.packages().
The help page for install.packages()
I need to install several (too many) packages from local *.zip
files.
is there any form to do it without clicking?
I'm asking for a R code that allow me perform these task.
---
Mario Alfonso Morales Rivera.
Profesor Asistente.
Departamento de Matemáticas y
On Tue, 14 Feb 2006, Mario Alfonso Morales Rivera wrote:
I need to install several (too many) packages from local *.zip
files.
is there any form to do it without clicking?
I'm asking for a R code that allow me perform these task.
See ?install.packages.
You seem to be using Windows (you
I need to install several (too many) packages from local *.zip
files.
Are you aware of being able to select multiple .zip files at one time
using SHIFT-click or CTRL-click?
is there any form to do it without clicking?
I'm asking for a R code that allow me perform these task.
You could
A minor inconvenience in updating an R installation is remembering which
packages were installed previously. Has anyone written a script to
inspect a previous installation, then get install the same packages
into the new installation?
--
Michael Prager
NOAA Center for Coastal Fisheries and
In
http://cran.r-project.org/contrib/extra/batchfiles/batchfiles_0.2-5.zip
are two Windows XP batch files:
movedir.bat
copydir.bat
which will move the packages (which is much faster and suitable
if you don't need the old version of R any more) or copy the packages (which
takes longer but
Michael H. Prager wrote:
A minor inconvenience in updating an R installation is remembering which
packages were installed previously. Has anyone written a script to
inspect a previous installation, then get install the same packages
into the new installation?
x - installed.packages()[,1]
This is one reason we normally recommend that you install into a separate
library. Then update.packages(checkBuilt = TRUE) is all that is needed.
However,
foo - installed.packages()
as.vector(foo[is.na(foo[, Priority]), 1])
will give you a character vector which you can feed to
On Ti, 2005-12-20, 16:11, Michael H. Prager skrev:
A minor inconvenience in updating an R installation is remembering which
packages were installed previously. Has anyone written a script to
inspect a previous installation, then get install the same packages
into the new installation?
If
Hi again,
I've just uninstalled R2.01 and installed the new R2.10 on my WindowsXP
machine. I then attempted to install the vegan package from source
files, as I learned to do last week, with the help of some of you. I
have updated my path variable to the new R directory (R/rw2010/bin
instead
On Mon, 25 Apr 2005, Tyler Smith wrote:
I've just uninstalled R2.01 and installed the new R2.10 on my WindowsXP
machine. I then attempted to install the vegan package from source
files, as I learned to do last week, with the help of some of you. I
have updated my path variable to the new R
Thanks! I tried adding the .Rbuildignore file, but that didn't work out.
So I found the Makedeps file in the vegan/src folder and deleted it.
That solved the problem.
Tyler
--
Tyler Smith
PhD Candidate
Department of Plant Science
[EMAIL PROTECTED]
__
to get my IT people to let
me put my location first.
Tom
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] Behalf Of Tyler Smith
Sent: Friday, 22 April 2005 1:27 PM
To: R-Help
Subject: [R] Installing packages from source on WindowsXP
Hi,
I'm having some
Tyler Smith wrote:
Hi,
I'm having some problems installing packages from the source files on
Windows, using R CMD INSTALL pkg. I'm running WindowsXP, and I've
followed the instructions as per the README.packages file from the R
installation. I ran into a hitch, with the install failing
Ok, I uninstalled my copy of HHW (and deleted the extra file from the
Rtools/bin folder), and reinstalled from the murdoch-sutherland site.
From what I read there I think it's the same version, and I actually
get a warning that I already have a newer version installed on my
machine (1.3.1)
Tyler Smith wrote:
Ok, I uninstalled my copy of HHW (and deleted the extra file from the
Rtools/bin folder), and reinstalled from the murdoch-sutherland site.
From what I read there I think it's the same version, and I actually
get a warning that I already have a newer version installed on my
On Fri, 2005-04-22 at 09:46 -0400, Tyler Smith wrote:
Ok, I uninstalled my copy of HHW (and deleted the extra file from the
Rtools/bin folder), and reinstalled from the murdoch-sutherland site.
From what I read there I think it's the same version, and I actually
get a warning that I
Hi everybody,
I have trouble in installing packages from source code by following Section
5.1 in manual R-admin.pdf . I am using R 2.1.0 and Win NT.
Following the Windows toolset section in the manual, I download the tool
set package from:
Hi,
I'm having some problems installing packages from the source files on
Windows, using R CMD INSTALL pkg. I'm running WindowsXP, and I've
followed the instructions as per the README.packages file from the R
installation. I ran into a hitch, with the install failing following a
hhc: not found
I installed FC 2 X86-64 on an Athlon 64 system. I then installed R
2.0.0. It runs fine except when I try to install or update packages
using either install.packages or update.packages. I get the
following types of errors:
gcc -I/usr/lib/R/include -I/usr/local/include -D__NO_MATH_INLINES
rab [EMAIL PROTECTED] writes:
I installed FC 2 X86-64 on an Athlon 64 system. I then installed R
2.0.0. It runs fine except when I try to install or update packages
using either install.packages or update.packages. I get the
following types of errors:
gcc -I/usr/lib/R/include
On our SLES8 for amd64 installation, GCC 3.2.x (forgot what x is) is the
default, and does not support -mcpu=k8. GCC 3.3.x is installed in
/opt/gcc33, and does support that flag.
Andy
From: Peter Dalgaard
rab [EMAIL PROTECTED] writes:
I installed FC 2 X86-64 on an Athlon 64 system. I
On Sat, 6 Nov 2004, rab wrote:
I installed FC 2 X86-64 on an Athlon 64 system. I then installed R
2.0.0. It runs fine except when I try to install or update packages
using either install.packages or update.packages. I get the
following types of errors:
gcc -I/usr/lib/R/include
But this is FC2, not FC3 (not released until tomorrow) and not SuSE. gcc
3.3.3 and 64-bit builds are the default on FC2, and R build out of the
box (unsuprising as it is one of our standard test platforms).
I have offered Martyn an RPM for FC2 on x86_64, but not had a reply.
On Sat, 6 Nov
Hello R users!
I am running R on windows and linux (Debian). Until recently I found
the function
install.packages('R-package_name')
which is just great and simple. It is standard for installing packages
for me under windows. Under Debian linux I got used to installing packages
vie apt-get
Gorjanc Gregor wrote:
same/similiar packaging system (dependencies, ...) as Debian. Is it wise
to mix all three methods?
Mixing R CMD and install.packages() doesn't pose any problems, AFAIK, but
mixing any of them with apt-get does. The problem is that apt-get doesn't
know what you're doing
On Wed, 2004-09-08 at 21:25, hadley wickham wrote:
On my computer, it seems that (binary?) packages installed through the
GUI in RAqua are not used available to the command line version of R,
while (source) packages installed with R CMD INSTALL are available to
both. This is a problem when I
Here's my guess:
R CMD INSTALL installs to .Library, and does not look at R_LIBS unless set
in its environment.
install.packages() installs at .libPaths()[1], and uses all the library
trees available. So if you have R_LIBS set in ~/.Renviron (as I have), or
.libPaths() set in .Rprofile or
Thanks to you both. Setting R_LIBS='~/Library/R/library/' in
~/.Renviron did the trick.
Thanks,
Hadley
__
[EMAIL PROTECTED] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide!
On my computer, it seems that (binary?) packages installed through the
GUI in RAqua are not used available to the command line version of R,
while (source) packages installed with R CMD INSTALL are available to
both. This is a problem when I run R CMD CHECK on a package that I am
creating that
I have R 1.9.0 running under Solaris 2.9 ona SunBlade 100, and am
very happy with it. I heard about the stuff at www.rmetrics.org and
thought it might be worth looking at. However, what I found there is
a bunch of .zip files. The entry page suggests that there is some
way to install packages
On Wed, 19 May 2004, Richard A. O'Keefe wrote:
I have R 1.9.0 running under Solaris 2.9 ona SunBlade 100, and am
very happy with it. I heard about the stuff at www.rmetrics.org and
thought it might be worth looking at. However, what I found there is
a bunch of .zip files. The entry page
I asked about installing R packages from ZIP files,
specifically with respect to the Rmetrics packages.
Sean Davis [EMAIL PROTECTED] asked:
Have you tried R CMD INSTALL filename.zip?
If that didn't work, could you simply unzip filename.zip and
install using R CMD INSTALL
Fred J. wrote:
yes, I loged in as admin. and that fixed the problem,
but when I type ?fdim I don't get the help docs, why?
even though I have all the htmls under
C:\Program Files\R\rw1081\library\fdim\html
thanks
Either you forgot to load the package
library(fdim)
or your installation
local({a - CRAN.packages()
+ install.packages(select.list(a[,1],,TRUE),
.libPaths()[1], available=a)})
trying URL
`http://cran.r-project.org/bin/windows/contrib/1.8/PACKAGES'
Content type `text/plain; charset=iso-8859-1' length
16079 bytes
opened URL
downloaded 15Kb
trying URL
On Sat, 6 Mar 2004 13:30:25 -0800 (PST), you wrote:
Error in int.unzip(zipname, NULL, dest) : destination
does not exist
R tries to build a temporary directory to hold the files, and it
sounds as though it's failing when it does that. You can see the sort
of name it is trying to use with this
yes, I loged in as admin. and that fixed the problem,
but when I type ?fdim I don't get the help docs, why?
even though I have all the htmls under
C:\Program Files\R\rw1081\library\fdim\html
thanks
--- Duncan Murdoch [EMAIL PROTECTED] wrote:
On Sat, 6 Mar 2004 13:30:25 -0800 (PST), you wrote:
Fred,
Did you loaded the library before typing ?fdim
?fdim
Error in help(fdim) : No documentation for `fdim' in specified packages
and libraries:
you could try `help.search(fdim)'
library(fdim)
?fdim
fdim package:fdim R Documentation
Calculation of
Hello,
I've just downloaded and installed the RAqua onto my Mac and I have R
up and running fine. Now I'm trying to get 'ape' downloaded and
installed and having quite the difficulty. I am following the
directions specified under 'Installing packages' where packages can be
downloaded and
On Mon, 29 Dec 2003, Sara Good-Avila wrote:
Hello,
I've just downloaded and installed the RAqua onto my Mac and I have R
up and running fine. Now I'm trying to get 'ape' downloaded and
installed and having quite the difficulty. I am following the
directions specified under 'Installing
Marc Schwartz [EMAIL PROTECTED] writes:
On Thu, 2003-11-13 at 12:18, Nathan Leon Pace, MD, MStat wrote:
Running under Redhat 7.3 Linux I have installed R Version 1.8.0
(2003-10-08) from a binary download using the rpm manager.
Using packageStatus(), I am attempted to upgrade several
On Fri, 2003-11-14 at 05:37, Peter Dalgaard wrote:
Marc Schwartz [EMAIL PROTECTED] writes:
On Thu, 2003-11-13 at 12:18, Nathan Leon Pace, MD, MStat wrote:
Running under Redhat 7.3 Linux I have installed R Version 1.8.0
(2003-10-08) from a binary download using the rpm manager.
Running under Redhat 7.3 Linux I have installed R Version 1.8.0
(2003-10-08) from a binary download using the rpm manager.
Using packageStatus(), I am attempted to upgrade several packages.
This is unsuccessful with the following error messages:
* Installing *source* package 'MASS' ...
**
Hi,
how to use install.packages to install SimpleR package of J. Verzani?
using install.packages with the CRAN packages is simple:
install.packages(ineq,contriburl=http://cran.at.r-project.org/bin/windows/contrib/1.8,CRAN=NULL)
same with Simple package fails:
On Fri, 24 Oct 2003 [EMAIL PROTECTED] wrote:
Hi,
how to use install.packages to install SimpleR package of J. Verzani?
using install.packages with the CRAN packages is simple:
install.packages(ineq,contriburl=http://cran.at.r-project.org/bin/windows/contrib/1.8,CRAN=NULL)
same with
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