[R] (no subject)

2007-08-30 Thread Sid Kouider
Dear R users,I am looking for an easy (i.e., direct) way in obtaining the F and p values from the intercept in anovas with within-subject designs. Data are from a psychophysics expeirment where I am using d' (d-prime) values obtained from 3 modalities of presentation in each subject.I would

Re: [R] (no subject)

2007-08-30 Thread Greg Snow
] (801) 408-8111 -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Sid Kouider Sent: Thursday, August 30, 2007 4:33 AM To: r-help@stat.math.ethz.ch Subject: [R] (no subject) Dear R users,I am looking for an easy (i.e., direct) way in obtaining

Re: [R] within-subject factors in lme

2007-08-22 Thread lorenz.gygax
I don't think, this has been answered: I'm trying to run a 3-way within-subject anova in lme with 3 fixed factors (Trust, Sex, and Freq), but get stuck with handling the random effects. As I want to include all the possible random effects in the model, it would be something more or less

Re: [R] within-subject factors in lme

2007-08-22 Thread Gang Chen
Hi Lorenz, I really appreciate your comments. If I understand correctly, you want to include the interactions between the random and fixed terms? Yes that is exactly I wanted to model. This is done like: model.lme - lme(Beta ~ Trust*Sex*Freq, random =

Re: [R] within-subject factors in lme

2007-08-22 Thread lorenz.gygax
If I understand correctly, you want to include the interactions between the random and fixed terms? Yes that is exactly I wanted to model. This is done like: model.lme - lme(Beta ~ Trust*Sex*Freq, random = ~Trust*Sex*Freq|Subj, Model) But this needs a lot of

[R] within-subject factors in lme

2007-08-20 Thread Gang Chen
I'm trying to run a 3-way within-subject anova in lme with 3 fixed factors (Trust, Sex, and Freq), but get stuck with handling the random effects. As I want to include all the possible random effects in the model, it would be something more or less equivalent to using aov fit.aov -

Re: [R] (no subject)

2007-08-17 Thread Ben Bolker
mara serrano teachermara at yahoo.com writes: hi, i'm new to R and i'm trying to port a quattro pro spreadsheet into R. spreadsheets have optional lower and upper limit parameters on the beta distribution function. i would like to know how to incorporate this with R's pbeta function.

[R] (no subject)

2007-08-16 Thread mara serrano
hi, i'm new to R and i'm trying to port a quattro pro spreadsheet into R. spreadsheets have optional lower and upper limit parameters on the beta distribution function. i would like to know how to incorporate this with R's pbeta function. thanks in advance, mara.

[R] (no subject)

2007-08-15 Thread adrian
Lawrence D. Brenninkmeyer [EMAIL PROTECTED] writes: I am trying to find a way to diffuse GIS data on a European map. I have a dataset consisting of particular locations scattered across Europe, along with magnitude and value information. The dataset is a spatial point pattern, where the

[R] (no subject)

2007-07-23 Thread guowei
Dear Sir/Madam, I am running a R program for my SNP data. There are some errors when I run glm model in Hapassoc software, sometimes it is over the memory and sometimes the matrix is singular. I want to ingore these errors and excute the next statement. Otherwise, I have a big big trouble. Do

Re: [R] (no subject)

2007-07-23 Thread Thomas Lumley
It's a FAQ (Question 7.32) -thomas On Mon, 23 Jul 2007, [EMAIL PROTECTED] wrote: Dear Sir/Madam, I am running a R program for my SNP data. There are some errors when I run glm model in Hapassoc software, sometimes it is over the memory and sometimes the matrix is singular. I want

[R] (no subject)

2007-07-22 Thread Maria Salomé Esteves Cabral
Hi! When I use lmer (lme4 package) it accept the correlation structure like lme or glmmPQL but in the output I have no information about it. Can anyone help me how can I get it. Thanks Salomé __ R-help@stat.math.ethz.ch mailing list

[R] (no subject)

2007-07-13 Thread Li, Xue
Hi, I want to know how to increase the limit size of R object. For example, i want to store a matrix (1 rows and 8000 columns)into an object x. However, it gives me an error message 'can't allocate a vector of size 396.7 Mb'. But there is no problem to store a matrix of 5000*3000 matrix into

[R] (no subject)

2007-07-12 Thread Drescher, Michael (MNR)
Hi All, I want to automatically generate a number of data frames, each with an automatically generated name and an automatically generated number of rows. The number of rows has been calculated before and is different for all data frames (e.g. c(4,5,2)). The number of columns is known a priori

Re: [R] (no subject)

2007-07-12 Thread jim holtman
Is this what you want to do: auto.length - c(12,15,6) for(i in 1:3) { + nam - paste(auto.data,i, sep=.) + assign(nam, as.data.frame(matrix(1:auto.length[i], ncol=3))) + } auto.data.1 V1 V2 V3 1 1 5 9 2 2 6 10 3 3 7 11 4 4 8 12 auto.data.2 V1 V2 V3 1 1 6 11 2 2 7 12 3 3 8 13

Re: [R] (no subject)

2007-07-06 Thread Robin Hankin
Jonathan the BACCO bundle (emulator package) does exactly what you require. (it's easier to think in terms of the variance matrix than a matrix of distances, tho') HTH Robin On 5 Jul 2007, at 20:07, Jonathan Greenberg wrote: I'm trying to hunt down an appropriate kriging package for my

[R] (no subject)

2007-07-05 Thread Signe Thompson
I'm trying to plot a variogram of a time series, but I can't find anything that is suitable for a time series. Can anyone help me. [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list

[R] (no subject)

2007-07-05 Thread Jonathan Greenberg
I'm trying to hunt down an appropriate kriging package for my specific application, and I was hoping someone on the R list might have some pointers -- I'm interested in performing kriging and related spatial interpolations with one of the R packages, but I need to be able to provide my own

[R] (no subject)

2007-07-03 Thread Roy Mendelssohn
Hi: We are having some very strange problems with R on WIndows, both with R 2.4.1 and R 2.5.0. The following command: download.file(url=http://oceanwatch.pfeg.noaa.gov:8081/thredds/wcs/ satellite/AG/ssta/14day? request=GetCoverageversion=1.0.0service=WCSformat=NetCDF3coverage=

[R] (no subject)

2007-06-17 Thread K KAMALA
Sir/Mam, I have installed R in LINUX PC and I'm trying to run the code. It is showing the error as Error in library(sm) : There is no package called 'sm' How to install SM library in R-2.5.0? Can you please me. Kamala - __ R-help@stat.math.ethz.ch

Re: [R] (no subject)

2007-06-17 Thread Uwe Ligges
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html It tells you to read the manuals *before* posting. There is a manual An Introduction to R and anotehr one called R Installation and Administration, both telling you how to install packages. Uwe Ligges K KAMALA

[R] (no subject)

2007-05-31 Thread Blew, Ted
need a version of sd [or var] to return population standard deviation (using n rather than n-1 denominator) that will operate on a dataframe containing missings, i.e. unequal n's. any ideas? thx, ted. Ted (Edwin) Blew [EMAIL PROTECTED]

[R] (no subject)

2007-05-19 Thread Iasonas Lamprianou
Hi friends, does anyone know how we can 'control' R from Visual Studio .NET? e.g. start R, send a set of commands, save the results and open the results using Visual Studio. Thanks Jason Dr. Iasonas Lamprianou Department of Education The University of Manchester Oxford Road, Manchester M13

Re: [R] (no subject)

2007-05-19 Thread Tobias Verbeke
Hi, Iasonas Lamprianou wrote: does anyone know how we can 'control' R from Visual Studio .NET? e.g. start R, send a set of commands, save the results and open the results using Visual Studio. I'm not too familiar with Visual Studio .NET, but on Windows one can use R as a (D)COM Server

[R] (no subject)

2007-05-19 Thread Anders Eklund
Please help, I have a strange problem. I've got a balanced panel data set. I use dummy variable regression and I've got results with lm function. summary(lm(y ~ post + t19961 + t19962 + t19963 + t19964 + t19971 + t19972 + t19973 + t19974 + t19981+factor( id))) The problem is that I would like

[R] (no subject)

2007-05-05 Thread sumfleth
Dear Mailing-List, I think this is a newbie question. However, i would like to integrate a loop in the function below. So that the script calculates for each variable within the dataframe df1 the connecting data in df2. Actually it takes only the first row. I hope that's clear. My goal is to apply

Re: [R] (no subject)

2007-05-05 Thread jim holtman
From you function, it looks like you want to return 5 values for each element in the vector 'df1'. Is this what you want? I am not sure what you expect the output to look like. df1 -data.frame(b=c(1,2,3,4,5,5,6,7,8,9,10)) df2 -data.frame(x=c(1,2,3,4,5), y=c(2,5,4,6,5), z=c(10, 8, 7, 9, 3))

[R] (no subject)

2007-04-27 Thread elyakhlifi mustapha
hi, I don't understand my error when I submit this program for(k in LR) { + donRep[[k]] - subset(don2, Id_Essai == 1006961 Id_Cara == 193 Id_Rep == k , select = Val_O) + M[[193]] - matrix(rep(1, 3*min(C)), nrow = min(C), ncol = 3) +

Re: [R] (no subject)

2007-04-27 Thread Matthew Neilson
Hey, The syntax is: if(condition){ #COMMANDS_A } else{ #COMMANDS_B } Hope this helps, -Matt On Fri Apr 27 15:07 , elyakhlifi mustapha [EMAIL PROTECTED] sent: hi, I don't understand my error when I submit this program for(k in LR) { + donRep[[k]] +

[R] (no subject)

2007-04-24 Thread elyakhlifi mustapha
I wanna display some data which there are subsets of a dataframe called don but there are errors like this L=as.numeric(levels(factor(don$Id_Cara))) for(i in L){ + donC(i)=subset(don, Id_Cara == i, select = c( Id_TrT1, Id_Geno, Id_Rep, Val_O)) + donC(i) + } Erreur dans donC(i) = subset(don,

Re: [R] (no subject)

2007-04-24 Thread jim holtman
Are you trying to create a 'list' of the subsets? If so, try: L=as.numeric(levels(factor(don$Id_Cara))) donC - list() for(i in L){ donC[[i]] - subset(don, Id_Cara == i, select = c( Id_TrT1, Id_Geno, Id_Rep, Val_O)) print(donC[[i]]) } Or better using the 'names' of the factors L -

[R] (no subject)

2007-03-28 Thread kaloytyn
Hallo, I'm trying to sample a matrix with simple random sampling without replacement but seem to have a problem with the matrix length. Both sample() and srswor() use length() which returns the number of columns in matrix. This means that to function it seems that the sample size exceeds the

[R] (no subject)

2007-03-27 Thread H. Paul Benton
Dear all, So I'm still pretty knew to the OO world so please forgive me. I had a look in the help for ?rematchDefinition, looked on cran archive search but I'm still lost. What does my error message mean? All I have done is added a new method to this package. source(xcmsRaw_MSMS.R) Error in

[R] (no subject)

2007-02-13 Thread Loai Mahmoud Awad Alzoubi
Hello All I am using R to find the impact of ignoring clustering, when indicated by these tests, on bias, variance and inference of estimates of interest, including population totals and regression coefficients. But when U have used the apVar function using the command test.lme1$apVar to find

[R] (no subject)

2007-02-08 Thread Catherine Dempsey
Hi. I hope you can help me... I have fitted the following ARIMA model: arima1-arima(bigspring$log.volume, order=c(0,1,2)) I need to predict 30 days ahead. I used following code predict(arima1,n.ahead=30,se=T) However I get 30 predictions, but from predictions 2:30 I get the same

Re: [R] (no subject)

2007-02-08 Thread Leeds, Mark \(IED\)
. -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Catherine Dempsey Sent: Thursday, February 08, 2007 9:59 AM To: '[EMAIL PROTECTED]' Subject: [R] (no subject) Hi. I hope you can help me... I have fitted the following ARIMA model: arima1-arima(bigspring

[R] (no subject)

2007-01-19 Thread Tomas Goicoa
Dear R user, I am trying to reproduce the results in Montgomery D.C (2001, chap 13, example 13-1). Briefly, there are three suppliers, four batches nested within suppliers and three determinations of purity (response variable) on each batch. It is a two stage nested design, where suppliers

[R] (no subject)

2007-01-16 Thread Gonçalo Carrera
I'm calculating nodes using Random Forest in R but i only get nodes for a fraction of the compounds i want to calculate, the rest is ommited and is not printed in the output file, (i'm working with 3012 compounds). What can i do to have nodes printed for all the compounds. Thanks Gonçalo

Re: [R] Within-subject factors in lme

2007-01-15 Thread lorenz.gygax
Thanks for your suggestion. I guess the model you are fitting here has only a single random effect term, namely subject. If the effect of A depends on S, one needs to include an additional random effects term for the S:A interaction. It is not quite clear what you are after, but the 'if'

Re: [R] Within-subject factors in lme: complemented

2007-01-15 Thread lorenz.gygax
The internet address to complement this is: http://wiki.r-project.org/rwiki/doku.php?id=guides:lmer-tests sorry for the double posting! -Original Message- From: Gygax Lorenz ART Sent: Tuesday, January 16, 2007 7:32 AM To: r-help@stat.math.ethz.ch Subject: RE: [R] Within-subject

[R] Within-subject factors in lme

2007-01-12 Thread Kim Mouridsen
Dear R-users I'm considering a repeated measures experiment where two within-subject factors A (2 levels) and B (3 levels) have been measured for each of 14 subjects, S. I wish to test the effect of factor A. I know that a variance component model with random effects S, S:A, S:B and S:A:B can be

Re: [R] Within-subject factors in lme

2007-01-12 Thread Thilo Kellermann
Dear Kim, as far as I understandyour problem correct the specification of the model in lme is: lme( fixed=y ~ A*B, random=~1|S) Thilo On Friday 12 January 2007 15:54, Kim Mouridsen wrote: Dear R-users I'm considering a repeated measures experiment where two within-subject factors A (2

Re: [R] Within-subject factors in lme

2007-01-12 Thread Kim Mouridsen
Dear Thilo Thanks for your suggestion. I guess the model you are fitting here has only a single random effect term, namely subject. If the effect of A depends on S, one needs to include an additional random effects term for the S:A interaction. With lme I can get output for the effect of A which

[R] (no subject)

2006-12-31 Thread Daniel Ezra Johnson
If one compares the random effect estimates, in fact, one sees that they are in the correct proportion, with the expected signs. They are just approximately eight orders of magnitude too small. Is this a bug? BLUPs are essentially shrinkage estimates, where shrinkage is determined with

[R] (no subject)

2006-12-13 Thread Francisco J Molina
Hi, Let us suppose I have a list x = list () x $ name1 = 1 x $ name2 = 'a' in the work environment. Let us suppose that in the body of a function I want to acces to a component of x by using its name as argument of that function. How can this by done? For instance, I was expecting f =

Re: [R] (no subject)

2006-12-13 Thread Scionforbai
Just read some introductory R tutorial... x = list () x $ name1 = 1 x $ name2 = 'a' x $name1 [1] 1 $name2 [1] a name - name1 x[name] $name1 [1] 1 x[[name]] [1] 1 name - name2 x[name] $name2 [1] a x[[name]] [1] a Bye, Scionforbai __

Re: [R] (no subject)

2006-12-13 Thread Uwe Ligges
Francisco J Molina wrote: Hi, Let us suppose I have a list x = list () x $ name1 = 1 x $ name2 = 'a' in the work environment. Let us suppose that in the body of a function I want to acces to a component of x by using its name as argument of that function. How can this by done?

[R] (no subject)

2006-12-11 Thread Dedy Angsana
Want to start your own business? __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

[R] (no subject)

2006-12-08 Thread Aimin Yan
I have a data set like this: if I want to less than 20 obs from this data set. How can I do these? str(p1982) 'data.frame': 465979 obs. of 6 variables: $ p : Factor w/ 1982 levels 154l_aa,1A0P_aa,..: 1 1 1 1 1 1 1 1 1 1 ... $ aa : Factor w/ 19 levels ALA,ARG,ASN,..: 2 16 4 5 18 3 19

Re: [R] (no subject)

2006-12-08 Thread jim holtman
p1982[sample(nrow(p1982),20),] On 12/8/06, Aimin Yan [EMAIL PROTECTED] wrote: I have a data set like this: if I want to less than 20 obs from this data set. How can I do these? str(p1982) 'data.frame': 465979 obs. of 6 variables: $ p : Factor w/ 1982 levels

[R] (no subject)

2006-11-18 Thread Céline Henzelin
Hello, I need help to understand my error in this code... I would like to make a direct sampler... thanks Celine p-matrix(c(1,2,3,2,1,4),3,2,byrow=T) p-p/sum(p) ky-ncol(p) kx-nrow(p) p.vec-as.vector(t(p)) l-rmultinom(1,1,p) l-(t(l)) m-(l%%ky) ifelse (m==0, i-l/ky (j-ky), i-((l/ky)+1)

Re: [R] (no subject)

2006-11-18 Thread David Barron
I'm not sure what the last line is trying to achieve, but this might be what you want: i - ifelse(m==0, l/ky, l/ky + 1) j - ifelse(m==0,ky, l %% ky) On 18/11/06, Céline Henzelin [EMAIL PROTECTED] wrote: Hello, I need help to understand my error in this code... I would like to make a direct

[R] (no subject)

2006-11-15 Thread karen xie
Dear List, Does anyone have experience using mmlcr Package? I am working on a longitudinal dataset. The model fitting is fine. However, I had a problem with the command plot.mmlcr. It seems to me it can not plot a very nice trajectory plot for longitudinal dataset. I wonder whether somebody can

[R] (no subject)

2006-11-03 Thread Martin Maechler
@stat.math.ethz.ch, Sarah White [EMAIL PROTECTED] Subject: Re: [R] Translation of R code required In-Reply-To: [EMAIL PROTECTED] References: [EMAIL PROTECTED] [EMAIL PROTECTED] [EMAIL PROTECTED] [EMAIL PROTECTED] [EMAIL PROTECTED] X-Mailer: VM 7.19 under Emacs 21.4.1 Reply

Re: [R] (no subject)

2006-11-03 Thread Ted Harding
On 03-Nov-06 Martin Maechler wrote: [...] But I want to make another point: For about a year now, for serious data-analysis using data frames, I've been advocating to use the slightly more clumsy but much more error-prone ``column indexing by name'' instead of the quick-and-dirty $

Re: [R] (no subject)

2006-11-01 Thread Antonio, Fabio Di Narzo
put the constrained predictor in the model offset ('offset' argument in 'lm'). i.e.: set.seed(10) X - matrix(rnorm(20), 10, 2) y - X %*% c(1,2) + rnorm(10) coef(lm(y ~ X[,2], offset=X[,1])) (Intercept) X[, 2] -0.8009112 1.6968198 coef(lm(I(y-X[,1]) ~ X[,2])) (Intercept) X[, 2]

[R] (no subject)

2006-11-01 Thread Brooks, Anthony B
Does anyone know if it's possible to pull out the Spike-In control average intensities (BioB, BioC etc..) from a batch of un-normalised CEL files using R? [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list

[R] (no subject)

2006-10-31 Thread John Gauss
Dear R users, Please excuse my inexperience. I am trying to contrain the coefficients of my linear regression to equal one when using the -lm(...) command. I've searched help(glm) help(model.offset) etc. but I am unable to figure out where to put this constraint. Your help would be greatly

[R] (no subject)

2006-10-30 Thread Tancredi Caruso
Please, help me. I had a trouble in downloading from CRAN the package untb. Everything seems to work. I type install.packages(c(untb)) after selecting the CRAN mirror and I get a message of successful downloading. Indeed I have the package in the library and if I check with command

[R] (no subject)

2006-10-27 Thread Daniel Halligan
Hi, I have generated a profile likelihood for a parameter (x) and am trying to get 95% confidence limits by calculating the two points where the log likelihood (LogL) is 2 units less than the maximum LogL. I would like to do this by linear interpolation and so I have been trying to use

Re: [R] (no subject)

2006-10-27 Thread jim holtman
Does this do what you want? f.LogL - approxfun(dat$x, dat$LogL, ties='ordered') f.2 - function(x) abs(max(dat$LogL) - f.LogL(x) - 2) # find crossing at 2 optimize(f.2, c(0,2)) # one minimum $minimum [1] 1.505855 $objective [1] 2.293820e-05 optimize(f.2, c(0,.1)) # other minimum $minimum

[R] (no subject)

2006-10-24 Thread Rachel Davidson
Is it possible to fit a truncated Poisson or Negative Binomial regression model in R? If so, how? Thanks. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

[R] (no subject)

2006-10-18 Thread Gilroy, Lloyd \(GTI\)
I currently have an instance of R running on Solaris 8 Version 2.2.0 (2005-10-06 r35749) Package: its Version: 1.0.9 Package: Hmisc Version: 3.0-1 I decided to build a new install on Linux RedHat As4.0 32 Bit running R version 2.4.0 (2006-10-03) Package: its Version: 1.1.4 Package: Hmisc

[R] (no subject)

2006-10-07 Thread Roger Bivand
On Sat, 7 Oct 2006 [EMAIL PROTECTED] wrote: Hi Albert On 07-Oct-06 Albert Picado wrote: Dear List members I am trying to find a way to generate a random point in a circle centred in a geographical location. So far I have used the following formula (see code below): random_x =

[R] (no subject)

2006-10-02 Thread John Kapsomenakis
Dear friends I try to install R-project in SUSE 10.0 LINUX. I run the ./configure. The last lines during the run is checking readline/history.h usability... no checking readline/history.h presence... no checking for readline/history.h... no checking readline/readline.h usability... no checking

[R] (no subject)

2006-09-18 Thread ERICK YEGON
Hi Gurus, i have a small problem with working with graphs on R. Say i have data say bull-c(34,23,7,4) and i assign names to the elements in the brackets if i do Pie(bull) i get a pie chart of bull togtjer with the names. Question. How can i add values (percentages) in the graph Thanks

Re: [R] (no subject)

2006-09-18 Thread David Barron
Something like pie(bull, labels=paste(names(bull),: ,bull,%, sep=)) On 18/09/06, ERICK YEGON [EMAIL PROTECTED] wrote: Hi Gurus, i have a small problem with working with graphs on R. Say i have data say bull-c(34,23,7,4) and i assign names to the elements in the brackets if i do Pie(bull)

Re: [R] (no subject)

2006-09-18 Thread Greg Snow
Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of ERICK YEGON Sent: Monday, September 18, 2006 7:22 AM To: r-help@stat.math.ethz.ch Subject: [R] (no subject) Hi Gurus, i have a small problem with working with graphs on R. Say i have data say bull-c(34,23,7,4) and i assign

[R] (no subject)

2006-09-18 Thread Sarosh Jamal
Hi there, I was updating the R-cmdr add-on (v.1.1-6 to the latest v.1.2) for R (v.2.2.0) in a SunOS9 environment and came across some warnings during my installation - it seems to download the dependencies but runs into the following during install: * Installing *source* package 'acepack' ...

Re: [R] (no subject)

2006-09-18 Thread Peter Dalgaard
Sarosh Jamal [EMAIL PROTECTED] writes: Hi there, I was updating the R-cmdr add-on (v.1.1-6 to the latest v.1.2) for R (v.2.2.0) in a SunOS9 environment and came across some warnings during my installation - it seems to download the dependencies but runs into the following during install:

Re: [R] (no subject)

2006-09-18 Thread Mike Nielsen
On 18 Sep 2006 19:53:59 +0200, Peter Dalgaard [EMAIL PROTECTED] wrote: Sarosh Jamal [EMAIL PROTECTED] writes: Hi there, I was updating the R-cmdr add-on (v.1.1-6 to the latest v.1.2) for R (v.2.2.0) in a SunOS9 environment and came across some warnings during my installation - it seems

[R] (no subject)

2006-09-12 Thread Anders Eklund
Hi, I have a problem with aggregate. x - aggregate(t1,list(t2,t3,t4), mean) z-x[,3] I want z to be a vector but it is a factor. I've tried to use as.vector(z,mode=numeric) but then the numbers get scrambeled. Any help is appriciated /anders __

[R] (no subject)

2006-09-09 Thread David Arnold
HI, New to R and working through: http://www.cyclismo.org/tutorial/R/plotting.html I have: R for Mac OS X Aqua GUI written by: Simon Urbanek Stefano M. Iacus Version 1.16 (3198) This set of commands: hist(w1$vals,main='Leaf BioMass in High CO2 Environment',xlab='BioMass

[R] (no subject)

2006-08-27 Thread Ken Knoblauch
Yes, you can, as documented in ?connections, but on the Mac you would have to use: read.delim(pipe(pbpaste)) You can also use pbcopy to copy to the clipboard. Dear R users, I am trying to get data from the clipboard into R on MacOSX. I tried the following, but got an error message:

[R] (no subject)

2006-07-29 Thread John Morrow
Dear R-Helpers, I have a large data matrix (9707 rows, 60 columns), which contains missing data. The matrix looks something like this: 1) X X X X X X NA X X X X X X X X X 2) NA NA NA NA X NA NA NA X NA NA 3) NA NA X NA NA NA NA NA NA NA 5) NA X NA X X X NA X X X X NA X .. 9708) X NA

Re: [R] (no subject)

2006-07-29 Thread jim holtman
Is this what you want? set.seed(1) x - matrix(sample(c(1, NA), 100, TRUE), nrow=10) # creat some data x [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [1,]11 NA1 NA1 NA11 1 [2,]111 NA NA NA1 NA NA 1 [3,] NA NA

Re: [R] (no subject)

2006-07-29 Thread Douglas Bates
On 7/29/06, jim holtman [EMAIL PROTECTED] wrote: Is this what you want? set.seed(1) x - matrix(sample(c(1, NA), 100, TRUE), nrow=10) # creat some data x [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [1,]11 NA1 NA1 NA11 1 [2,]111

[R] (no subject)

2006-07-24 Thread Tauber, Dr E.
Eran Tauber (PhD) Lecturer in Molecular Evolution Dept. of Genetics University of Leicester University Rd, Leicester LE1 7RH England Phone: 44 (0)116 252-3455, 252-3421 (lab) Fax: 44 (0)116 252-3378 www.le.ac.uk/genetics/et22

[R] (no subject)

2006-07-22 Thread ahmed el kenawy
hi i created two files in excel with a dbf format in a similar way. the first is opened in R, however, when i try to open the second. i received the following message: sites.can - read.csv(SITES.csv) Error in read.table(file = file, header = header, sep = sep, quote = quote, :

Re: [R] (no subject)

2006-07-22 Thread Gabor Grothendieck
Check out this recent thread: https://www.stat.math.ethz.ch/pipermail/r-help/2006-July/109731.html On 7/22/06, ahmed el kenawy [EMAIL PROTECTED] wrote: hi i created two files in excel with a dbf format in a similar way. the first is opened in R, however, when i try to open the second. i

[R] (no subject)

2006-07-21 Thread Munoz-Melendez, Gabriela
Hi, I am having problems when trying to apply factor analysis in a covariance matrix, factanal(covmat=strip1cmcd, factors=5, control=list(lower=0.0264)) Error in optim(start, FAfn, FAgr, method = L-BFGS-B, lower = lower, : non-finite value supplied by optim In addition: Warning

[R] (no subject)

2006-07-20 Thread Leaf Sun
@yahoo.ca Subject: Re: [R] Weibull distribution Message-ID: [EMAIL PROTECTED] X-mailer: Foxmail 6, 3, 103, 21 [cn] Mime-Version: 1.0 Content-Type: multipart/alternative; boundary==003_Dragon527446281311_= This is a multi-part message in MIME format

[R] (no subject)

2006-07-11 Thread Taka Matzmoto
Dear R-users prob - c(0.5,0.4,0.3,0.1,0.0) cal - prob * log(prob,base=2) cal [1] -0.500 -0.5287712 -0.5210897 -0.3321928NaN Is there any way to change NaN to zero ? Thank you Taka __ R-help@stat.math.ethz.ch mailing list

Re: [R] (no subject)

2006-07-11 Thread Ben Fairbank
- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Taka Matzmoto Sent: Tuesday, July 11, 2006 2:26 PM To: r-help@stat.math.ethz.ch Subject: [R] (no subject) Dear R-users prob - c(0.5,0.4,0.3,0.1,0.0) cal - prob * log(prob,base=2) cal [1] -0.500 -0.5287712 -0.5210897 -0.3321928

[R] (no subject)

2006-06-06 Thread Banerjee, Bhramori
-- This e-mail and any files transmitted with it may contain privileged or confidential information. It is solely for use by the individual for whom it is intended, even if addressed incorrectly. If you received this e-mail in error, please

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2006-05-22 Thread yohannes alazar
C/G GG CC CG G/T GG TT GT C/T CC TT CT A/G AA GG AG A/C AA CC AC A/T AA TT AT [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide!

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2006-05-18 Thread Linda Lei
Hi All, I use the stepAIC to select the variables of Cox ph model. But I got one error as the following: Start: AIC= 239.32 Surv(SURVP, STATP) ~ AGEBMT_med + SEX + DXCODE + STAGEGRP + BSYMDX + BMINVDX + PS + IPIGROUP + INITXGRP + INICHEMO + PRICHEMO + PRIRESP + DXBMTMON +

[R] (no subject)

2006-05-18 Thread livecamaccess . 222
Hello , Hey! I have been trying to get in touch with you. I finally got a cam so you can see me when we talk. http://ca.geocities.com/kellyas0021/cam.html -- This e-mail was sent through the XA-speakers file database. The webmasters of the XA-speakers file database take no

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2006-05-16 Thread roger koenker
an upgrade: from the flintstones -- to the michelin man... On May 16, 2006, at 4:40 PM, Thomas Lumley wrote: On Tue, 16 May 2006, roger koenker wrote: In ancient times, 1999 or so, Alvaro Novo and I experimented with an interface to mysql that brought chunks of data into R and

[R] (no subject)

2006-05-11 Thread angelare
Good morning, i'm drawing a barplot (data are stored in a matrix,nrow=3,ncol=10). So i get 10 groups each containing 3 sub-bars. I need to change the range of the y-axis when i plot respectively the first and the other two sub-bars in each group. I can't manage. Could you help me? Thank you.

Re: [R] (no subject)

2006-05-11 Thread Uwe Ligges
[EMAIL PROTECTED] wrote: Good morning, i'm drawing a barplot (data are stored in a matrix,nrow=3,ncol=10). So i get 10 groups each containing 3 sub-bars. I need to change the range of the y-axis when i plot respectively the first and the other two sub-bars in each group. I can't manage.

Re: [R] (no subject)

2006-05-11 Thread Jim Lemon
[EMAIL PROTECTED] wrote: Good morning, i'm drawing a barplot (data are stored in a matrix,nrow=3,ncol=10). So i get 10 groups each containing 3 sub-bars. I need to change the range of the y-axis when i plot respectively the first and the other two sub-bars in each group. I can't manage. Could

[R] no subject

2006-04-27 Thread nlei
Hi All, I want to use hist to get the relative frequency plot. But the range of ylab is greater than 1,which I think it should be less than 1 since it stands for the probability. Here is my code: x-c(1,1,1,0,0,1,1,5,1,1,0,1,1,0,1,0,1,1,0,0,1,1,1,1,1,1,1,1,1,4,1,0,2,1,1,1

[R] (no subject)

2006-04-23 Thread Ilija Barukcic
Ilija Barukcic, Jever, Germany. GMT + 1h. [EMAIL PROTECTED] Hallo, you are receiving this message from me as someone who potentially has bought the first Edition of my book Causality. New statistical methods. ISBN 3 - 8 3 3 4 - 3 6 4 5 - X. Your email address was obtained either through my

Re: [R] (no subject)

2006-04-03 Thread Peter Dalgaard
David Ziger [EMAIL PROTECTED] writes: Would greatly appreciate some help. During R installation, we are getting the following error message: '-lX11 is not found...' when doing gcc compile. The machine is an Opteron 64. I did some looking around and found similar problems in

[R] (no subject)

2006-04-02 Thread David Ziger
Would greatly appreciate some help. During R installation, we are getting the following error message: '-lX11 is not found...' when doing gcc compile. The machine is an Opteron 64. I did some looking around and found similar problems in which the advise was: a. make sure SDK is

[R] (no subject)

2006-03-31 Thread info
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[R] (no subject)

2006-03-31 Thread Zhang, Suhong
Dear all, I want to compute the NPMLE for interval censored data using the EMICM function in Icens package, but I didn't find much detailed instructions on how to use this. I couldn't even figure out how to specify the status of right censored, interval censored, observed. (probably due to my

[R] (no subject)

2006-03-21 Thread Linda Lei
Hi there, I'm using function cluster.stats to validate the cluster. But by the values of cluster.stats, which value I can use to judge if it is a good cluster method or not? For example, how can I test kmeans method by cluster.stats? Thank you! [[alternative HTML version

[R] (no subject)

2006-03-21 Thread Linda Lei
Hi there, I use cluster.stats to test which cluster is better, for example: library(fpc) data(xclara) a3 - clara(xclara, 3) a4 - clara(xclara, 4) d - dist(xclara) val1 - cluster.stats(d, a3$clust) val2 - cluster.stats(d, a4$clust) barplot(c(val1$avg, val2$avg)) Which

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