Re: [R] installation problem for a new package
Do use "reply-all"... others may be able to respond more quickly or more
accurately than I. I have re-introduced the mailing list to this reply.
For example, if you read [1] it says there is a system requirement that the
completely separate gmp software be installed using your system software
installation tools. I happen to be unfamiliar with the details of MacOS system
administration, so I cannot offer useful guidance other than that you need to
solve this and that there exists a mailing list dedicated to such
MacOS-specific questions about R [2]. You can of course simply Google for
similar threads or blogs about gmp on MacOS to find clues as well.
I will also add that there seem to be a variety of conditions that can cause
the automatic dependency management features of install.packages() to fail, and
in such cases it is normal to focus on installing the problematic dependent
packages one at a time. This is particularly true in this case where there are
requirements for the dependency beyond what R can deal with, so ignoring advice
from those with more experience than yourself about focusing on the dependency
separately is probably less productive than simply following that advice.
[1] https://cran.r-project.org/web/packages/gmp/index.html
[2] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
On February 24, 2022 12:11:14 PM PST, Tariq Khasiri
wrote:
>Will correct my formatting as you kindly suggested.
>
>I believe gmp and CVXR is not getting installed but with the dependencies,
>it's supposed to be installed as the package builder posted in his website.
>Therefore, I'm quite puzzled that do I need to install the other two
>packages separately or not?
>
>install_github("asheshrambachan/HonestDiD", dependencies = TRUE)
>Downloading GitHub repo asheshrambachan/HonestDiD@HEAD
>Installing 1 packages: gmp
>
> There is a binary version available but the source version is later:
> binary source needs_compilation
>gmp 0.6-2.1 0.6-4 TRUE
>
>Do you want to install from sources the package which needs compilation?
>(Yes/no/cancel) yes
>installing the source package ‘gmp’
>
>trying URL 'https://cran.rstudio.com/src/contrib/gmp_0.6-4.tar.gz'
>Content type 'application/x-gzip' length 163941 bytes (160 KB)
>==
>downloaded 160 KB
>
>* installing *source* package ‘gmp’ ...
>** package ‘gmp’ successfully unpacked and MD5 sums checked
>** using staged installation
>checking for gcc... clang -mmacosx-version-min=10.13
>checking whether the C compiler works... yes
>checking for C compiler default output file name... a.out
>checking for suffix of executables...
>checking whether we are cross compiling... no
>checking for suffix of object files... o
>checking whether we are using the GNU C compiler... yes
>checking whether clang -mmacosx-version-min=10.13 accepts -g... yes
>checking for clang -mmacosx-version-min=10.13 option to accept ISO C89...
>none needed
>checking how to run the C preprocessor... clang -mmacosx-version-min=10.13
>-E
>checking whether we are using the GNU C++ compiler... yes
>checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++14 accepts
>-g... yes
>checking for grep that handles long lines and -e... /usr/bin/grep
>checking for egrep... /usr/bin/grep -E
>checking for ANSI C header files... rm: conftest.dSYM: is a directory
>rm: conftest.dSYM: is a directory
>yes
>checking for sys/types.h... yes
>checking for sys/stat.h... yes
>checking for stdlib.h... yes
>checking for string.h... yes
>checking for memory.h... yes
>checking for strings.h... yes
>checking for inttypes.h... yes
>checking for stdint.h... yes
>checking for unistd.h... yes
>checking gmp.h usability... no
>checking gmp.h presence... no
>checking for gmp.h... no
>configure: error: Header file gmp.h not found; maybe use
>--with-gmp-include=INCLUDE_PATH
>ERROR: configuration failed for package ‘gmp’
>* removing
>‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gmp’
>
>The downloaded source packages are in
>‘/private/var/folders/4m/tvx9lnqs0rx6wgnysxz36vm0gp/T/Rtmpk3pocK/downloaded_packages’
>✓ checking for file
>‘/private/var/folders/4m/tvx9lnqs0rx6wgnysxz36vm0gp/T/Rtmpk3pocK/remotes86e84daddc5e/asheshrambachan-HonestDiD-419f305/DESCRIPTION’
>...
>─ preparing ‘HonestDiD’:
>✓ checking DESCRIPTION meta-information ...
>─ checking for LF line-endings in source and make files and shell scripts
>─ checking for empty or unneeded directories
>─ building ‘HonestDiD_0.2.0.tar.gz’
>
>* installing *source* package ‘HonestDiD’ ...
>** using staged installation
>** R
>** data
>*** moving datasets to lazyload DB
>** inst
>** byte-compile and prepare package for lazy loading
>Error: package or namespace load failed for ‘CVXR’ in loadNamespace(j <-
>i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
> there is no package called ‘gmp’
>Error: package ‘CVXR’ could not be loaded
>Execution halted
>ERROR: lazy loading failed for package
Re: [R] installation problem for a new package
These messages seem relevant:
>Error: package �CVXR’ could not be loaded
>Warning messages:
>1: In i.p(...) : installation of package �gmp’ had non-zero exit status
You need to make sure these packages are installed successfully before the
package you are interested will install.
Please don't send formatted email to this list ... as the Posting Guide
indicates, the list is for plain text and others may receive a garbled version
of what you sent it your email program is not configured properly.
On February 24, 2022 11:43:05 AM PST, Tariq Khasiri
wrote:
>Hello everyone,
>
>I'm trying to install a package honestdid and following the commands of the
>developer of that package
>
># Install some packages
>library(devtools)
>install_github("bcallaway11/BMisc", dependencies = TRUE)
>install_github("bcallaway11/did", dependencies = TRUE)
>install_github("asheshrambachan/HonestDiD", dependencies = TRUE)
>
>
>But, the error message is saying:
>
>* installing *source* package �HonestDiD’ ...
>** using staged installation
>** R
>** data
>*** moving datasets to lazyload DB
>** inst
>** byte-compile and prepare package for lazy loading
>Error: package or namespace load failed for �CVXR’ in loadNamespace(j
><- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
> there is no package called �gmp’
>Error: package �CVXR’ could not be loaded
>Execution halted
>ERROR: lazy loading failed for package �HonestDiD’
>* removing
>�/Library/Frameworks/R.framework/Versions/4.1/Resources/library/HonestDiD’
>Warning messages:
>1: In i.p(...) : installation of package �gmp’ had non-zero exit status
>2: In i.p(...) :
> installation of package
>�/var/folders/4m/tvx9lnqs0rx6wgnysxz36vm0gp/T//Rtmpk3pocK/file86e83034c58c/HonestDiD_0.2.0.tar.gz’
>had non-zero exit status
>
>
>Can anyone guide me why i'm having this issue? Thanks in advance !
>
> [[alternative HTML version deleted]]
>
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--
Sent from my phone. Please excuse my brevity.
__
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