Re: [R-pkg-devel] Error during automatic check for vignette re-building - The magick package is required to crop

2020-11-05 Thread Lluís Revilla
Dear Pablo, Sometimes when building a vignette the lines reported are a bit off (I usually check the code above and below those lines). I could reproduce the error on R 4.0.1, the error is triggered on lines 515-519 on the following code: relationship_plot(qtl_file=out.qtls.filtered, x="Abbrev",

Re: [R-pkg-devel] Error during automatic check for vignette re-building - The magick package is required to crop

2020-11-05 Thread Pablo Fonseca
Dear Llu�s Revilla, Thank you very much for the comments and suggestions. I changed the vignette format from the BiocStyle to a regular html. However, I am still getting an error. Now, the error is "Input vector too short" and it is related with the same code chunk lines 465-506. I can't

Re: [R-pkg-devel] Error during automatic check for vignette re-building - The magick package is required to crop

2020-11-05 Thread Lluís Revilla
Hi Pablo, "The magick package is required to crop" is related to using BiocStyle for your vignette. Not sure what causes it, but I reported this error some time ago: https://github.com/Bioconductor/BiocStyle/issues/77. On related issues and on bioc-devel mailing list

Re: [R-pkg-devel] Error during automatic check for vignette re-building - The magick package is required to crop

2020-11-05 Thread Pablo Fonseca
Dear Duncan Murdoch, Thank you for the quickly reply. Yes, the package is on Github. Any comment or suggestion will be very welcome. https://github.com/pablobio/GALLO Kind regards. Pablo Augusto de Souza Fonseca, Ph.D. Postdoctoral Fellow at University of Guelph Centre for Genetic Improvement

Re: [R-pkg-devel] Error during automatic check for vignette re-building - The magick package is required to crop

2020-11-05 Thread Duncan Murdoch
On 05/11/2020 10:55 a.m., Pablo Fonseca wrote: Dear all, Currently I am trying to update my package (GALLO) with some small edits in the code. However, the package is not passing in the automatic check. I am getting only two warnings: The first one is a warning related with the maintainer

[R-pkg-devel] Error during automatic check for vignette re-building - The magick package is required to crop

2020-11-05 Thread Pablo Fonseca
Dear all, Currently I am trying to update my package (GALLO) with some small edits in the code. However, the package is not passing in the automatic check. I am getting only two warnings: The first one is a warning related with the maintainer email (my email in the case), which is correct. I