Re: [R-pkg-devel] Install Package from GitHub in Vignette

2019-11-11 Thread Dirk Eddelbuettel
On 11 November 2019 at 16:17, Daniel Sjoberg wrote: | Awesome, I'll check it out. I do like the HTML vignettes, so I am hoping I | can get it working in that format! Well, as I said (but wrote poorly, dropping a "non"): Mark's approach is for pdf. I like as you then get by with Sweave only, hen

Re: [R-pkg-devel] Install Package from GitHub in Vignette

2019-11-11 Thread Daniel Sjoberg
Awesome, I'll check it out. I do like the HTML vignettes, so I am hoping I can get it working in that format! On Mon, Nov 11, 2019 at 1:23 PM Dirk Eddelbuettel wrote: > > On 11 November 2019 at 12:44, Daniel Sjoberg wrote: > | Thank you Ben. That is a great suggestion. While searching for > |

Re: [R-pkg-devel] Install Package from GitHub in Vignette

2019-11-11 Thread Dirk Eddelbuettel
On 11 November 2019 at 12:44, Daniel Sjoberg wrote: | Thank you Ben. That is a great suggestion. While searching for | instructions on using pre-compiled vignettes, I came across a few posts | recommending the dependency package be stored in a drat repository on | GitHub and using the DESCRIPTIO

Re: [R-pkg-devel] Install Package from GitHub in Vignette

2019-11-11 Thread Daniel Sjoberg
Thank you Ben. That is a great suggestion. While searching for instructions on using pre-compiled vignettes, I came across a few posts recommending the dependency package be stored in a drat repository on GitHub and using the DESCRIPTION `Additional_repositories:` tag to point to it. This solutio

Re: [R-pkg-devel] Using FORTRAN libraries and compiler options

2019-11-11 Thread Avraham Adler
If I’m not mistaken, dgemm is a BLAS call. That should be accessible from Fortran via an external call. I think the mvtnorm package calls BLAS/LAPACK from Fortran if that helps. Avi On Mon, Nov 11, 2019 at 6:40 AM Rampal S. Etienne wrote: > Hello, > > I am using FORTRAN code with the deSolve pa

Re: [R-pkg-devel] Using FORTRAN libraries and compiler options

2019-11-11 Thread Erin Hodgess
Hello! Have you tried compiling with the -lblas -llapack options, please? Then you can use the appropriate subroutine. Thanks, Erin On Mon, Nov 11, 2019 at 9:40 AM Rampal S. Etienne wrote: > Hello, > > I am using FORTRAN code with the deSolve package. However, the code > still runs slowly. G

[R-pkg-devel] Using FORTRAN libraries and compiler options

2019-11-11 Thread Rampal S. Etienne
Hello, I am using FORTRAN code with the deSolve package. However, the code still runs slowly. Googling tells me that there are two options to speed up my code: 1. Compile with option -O3 2. Use the library dgemm. I understand that this can be set in makevars. However, as I have limited experien

[R-pkg-devel] Updating package with a dependency (rJava) that doesn't build on all flavours

2019-11-11 Thread Tomáš Kliegr
Hi, I maintain a package in CRAN, for which I am struggling to push the latest updates. The problem is as follows: My package passes tests without error or notice on all flavors but one, where the install fails due to an installation error of a dependency package (package rJava on r-devel-wind