Re: [R-sig-Geo] Shape file problem

2013-01-30 Thread Barry Rowlingson
What are the correct names? 01, 02 and so on? Or were you expecting something else? We don't have your data so we have no idea what the right answer is. How did you create your shapefile? In R? You don't say. Please show is the code you used, or a simple example that illustrates the problem. It

[R-sig-Geo] Help with interpreting correlog results, package ncf

2013-01-30 Thread Beazley, Lindsay
Dear Roger Bivand and list members, I am looking for advice on how to interpret a correlogram of species richness data collected from photographic transects of the seabed. I am an amateur in R, and am completely new to spatial analysis, so please forgive the naivety of my issue. I have four

[R-sig-Geo] probability predict by class

2013-01-30 Thread Anne.Reichmuth
Dear R group, I have a question about calculating and plotting probability of a classification using a raster image. My data consist of three different classes, in my case three tree species with specific reference spectra. Linear discriminant analysis was used for classifying the spectra

Re: [R-sig-Geo] Shape file problem

2013-01-30 Thread Milan Sharma
Here is my problem in R: readOGR(dsn=C:/Users/abc/desktop/shapfile,SD06) OGR data source with driver: ESRI Shapefile Source: C:/Users/abc/desktop/shapfile, layer: SD06 with 66 features and 36 fields Feature type: wkbPolygon with 2 dimensions  #Is the above program running correctly? Or, is this

Re: [R-sig-Geo] Shape file problem

2013-01-30 Thread Barry Rowlingson
On Wed, Jan 30, 2013 at 2:42 PM, Milan Sharma milansharma2...@yahoo.com wrote: #in my shape file, column names have come #SD_csv_O, SD_CSV_D,instead of open water, #or other names like that because of my problem in creating shape file. Well, we don't know how you created the shapefile so we

[R-sig-Geo] Failure during raster IO

2013-01-30 Thread Kathi Borgmann
I am new to Raster and posting in stackoverflow. When I attempt to plot stacked rasters or use the predict function I get an error: failure during raster IO. I have googled the error message but have not found any useful suggestions as to what could be causing the error. All of my packages are

[R-sig-Geo] SpatialPolygon with the max value gets no color assigned in spplot function when using at parameter

2013-01-30 Thread Jan Hornych
Hi, I would like to do coloring of map regions based on the region values weight. The approach I am taking is first to break regions into equal intervals, classIntervals(spdf$weight,4)$brks #4 intervals in this case and than coloring all regions within the interval with the same color col =

Re: [R-sig-Geo] SpatialPolygon with the max value gets no color assigned in spplot function when using at parameter

2013-01-30 Thread Roger Bivand
On Wed, 30 Jan 2013, Jan Hornych wrote: Hi, I would like to do coloring of map regions based on the region values weight. The approach I am taking is first to break regions into equal intervals, classIntervals(spdf$weight,4)$brks #4 intervals in this case and than coloring all regions within

Re: [R-sig-Geo] lapply and SpatialGridDataFrame

2013-01-30 Thread Irucka Embry
Hi all, Roger Bivand - thank-you for your assistance. I have attempted to write a for loop to create an object named maxdepth (see str(maxdepth)), but the loop overwrites the previous iteration. Although I have 54 files that I will be processing, I am attempting this for loop with only the first

[R-sig-Geo] converting latitude and longitude to UTM

2013-01-30 Thread Abby Rudolph
Hello, Is there a formula to convert x-/y-coordinates (latitude /longitude) into UTM. My data is in the form of latitude and longitude, but the code I wish to use relies on x_m and y_m which I believe are UTM measurements (x in meters and y in meters). Thanks Abby [[alternative HTML

Re: [R-sig-Geo] lapply and SpatialGridDataFrame

2013-01-30 Thread MacQueen, Don
This should help you get started: floodfiles - list.files(pattern=.txt) maxdepths - list() length(maxdepths) - length(floodfiles) for(i in seq(along=floodfiles)) { cat('---',i,floodfiles[i],'--\n') maxdepths[[i]] - readAsciiGrid(floodfiles[i])} Of course it overwrites. You are

[R-sig-Geo] A question about conversion from a spatialploygondatafrme object to a geojson string with rgdal library

2013-01-30 Thread chenyiqun
Hi all, I got a question about conversion from a spatialploygondatafrme object to a geojson string with rgdal library. Currently I am doing in this way (code attached as below), using writeOGR to write the targetDataFrame to a temporary file, and then read the geojson string from the file.

Re: [R-sig-Geo] lapply and SpatialGridDataFrame

2013-01-30 Thread Robert J. Hijmans
Irucka, This maxdepth.plys - lapply(modeldepthsmore, Grid2Polygons(modeldepthsmore, level = FALSE)) Should probably be something like: maxdepth.plys - lapply(modeldepthsmore, function(i) Grid2Polygons(i, level = FALSE)) Robert On Sun, Jan 27, 2013 at 2:47 AM, Irucka Embry

Re: [R-sig-Geo] converting latitude and longitude to UTM

2013-01-30 Thread Michael Sumner
spTransform function in rgdal will do this, but UTM is a family of projections so you need at least to know which zone is appropriate and whether it is even any kind of sensible choice for projecting your coordinates to. What is the range of the data and for what purpose do you need them

Re: [R-sig-Geo] probability predict by class

2013-01-30 Thread Robert J. Hijmans
Anne, you do this: Rprob - predict(D, lda.0x, type=probabilities) But ?predict.lda does not say that you can use an argument like type=probabilities To get the posterior probabilities you could probably do: Rprob - predict(D, lda.0x, fun=function(x){predict(x)$posterior}) (based on what

Re: [R-sig-Geo] See coordinates vector in raster

2013-01-30 Thread Robert J. Hijmans
On Wed, Jan 23, 2013 at 5:17 PM, Michael Sumner mdsum...@gmail.com wrote: Better depends on what was required, which wasn't specified - all the coordinates, or just 1-d arrays of the unique ones. Our answers are totally different, Thiago I trust that you see the difference? It would be good

Re: [R-sig-Geo] Zonal Statistics as Table

2013-01-30 Thread Robert J. Hijmans
This function, and other functions in the raster package, are independent of the file type in which the values may be stored. RH On Thu, Jan 24, 2013 at 1:31 PM, ping yang pingyang@gmail.com wrote: Hi, Is this zonal function works on NetCDF file? Ping [[alternative HTML

Re: [R-sig-Geo] Rasterbrick to netCDF

2013-01-30 Thread Robert J. Hijmans
Prajjwal, As Thiago shows you can do such things directly via the ncdf(4) package; raster does not provide too many options beyond setting variable names (arguments varname, varunit, longname, xname, yname, zname, zunit), see ?writeRaster. It would be nice to expand that and allow for more

Re: [R-sig-Geo] error in rasterFromXYZ

2013-01-30 Thread Robert J. Hijmans
Narayani, This works for me: library(dismo) # for the example data fnames - list.files(path=paste(system.file(package=dismo), '/ex', sep=''), pattern='grd', full.names=TRUE ) BioStack - stack(fnames) BioPt1 = na.omit(rasterToPoints(BioStack)) pcaPt1 = princomp(BioPt1[,-c(1:2)], cor = TRUE)

[R-sig-Geo] 3D Point Pattern Summary Statistics

2013-01-30 Thread Adrian.Baddeley
Rajagopal Vijayaraghavan [vijayaragha...@smart.mit.edu] wrote: I want to test the validity of a non-parametric model to simulate a 3D point pattern. [...] I use the F3est, K3est, pcf3Est and G3est functions to generate the envelopes from this non-parametric model to then see if