.) These binaries are mainly if you want to compiled R from source.
Best,
JJB
[1]: https://mac.r-project.org/bin/
[2]: https://github.com/R-macos/recipes
From: Adrian Dușa
Date: Friday, March 24, 2023 at 1:23 AM
To: Balamuta, James Joseph
Cc: r-sig-mac@r-project.org
Subject: Re: [R-SIG-Mac] New {macrtools
All,
Hope all is well.
About a month or so back, we revisited the **unofficial** macOS R compilation
toolchain setup wizard with a focus on making it more maintainable without an
Apple developer subscription. The result is the new {macrtools} R package. You
can learn more about it here:
Cheers,
Simon
> On Nov 20, 2020, at 3:34 AM, Balamuta, James Joseph
wrote:
>
> Prof. Ripley,
>
> Hope all is well.
>
> The issue was raised by Jeroen on GitHub on Oct 30th regarding
libpq.5.dylib being missing:
>
> https:/
Prof. Ripley,
Hope all is well.
The issue was raised by Jeroen on GitHub on Oct 30th regarding libpq.5.dylib
being missing:
https://github.com/R-macos/recipes/issues/14
To date, Simon hasn't responded to it. Not sure re-building with the recipe
as-is will yield the correct outcome as the
Isaac,
To build off of what Bob mentioned, you may wish to check that Rcpp and
RcppArmadillo are indeed installed.
From SO, we see:
/Library/Frameworks/R.framework/Packages/RcppArmadillo/include/RcppArmadilloForward.h:26:10:
fatal error: 'RcppCommon.h' file not found
#include
Yes, the old gfortran ~4.8.6 binary can cause this issue. Unfortunately, there
isn't an uninstaller. I wrote up some guidelines for removing it here:
https://thecoatlessprofessor.com/programming/cpp/removing-the-old-r-custom-gfortran-4.8.2-binary/
The gist is:
# Download installer into working
Roy,
For R 4.0.0, there is no need to keep Makevars or Renviron's PATH configuration
as everything should just "work." The R 4.0.0 binary will look at the default
installation location for OS-specific gfortran8.2 or gfortran6.3 version.
Having said this, there is also the OpenMP opt-in
Simon,
Thank you for the official instructions on using OpenMP with R 4.0.0!
Also, thanks for making the source behind mac.r-project.org available on
GitHub!
https://github.com/s-u/R-mac-dev
Would you consider creating an organization to house all repositories related
to R for macOS in a
Kevin,
Simon discussed why they opted to avoid this back in June '19 when Jon Clayden
brought up a similar success.
https://stat.ethz.ch/pipermail/r-sig-mac/2019-June/012998.html
The sentiment was using the system compiler is in manner is unsupported and
works only on some systems. I'm not
-project.org/libs-4/
Best,
JJB
On 4/1/20, 5:01 PM, "R-SIG-Mac on behalf of Balamuta, James Joseph"
wrote:
Simon,
Thank you for the quick response!
> 1. correct, there was too much trouble in this. But please feel free to
start a new thread about this here if yo
http://mac.r-project.org/libs-4/INDEX
and R from
http://mac.r-project.org/high-sierra/R-4.0-branch/R-4.0-branch.pkg
Thanks,
Simon
> On 2/04/2020, at 2:30 AM, Balamuta, James Joseph
wrote:
>
> Simon,
>
> Thanks for the overvie
Simon,
Thanks for the overview! A few quick questions:
1. Compiler-wise, the external clang compiler requirement was removed and, so,
there is no guarantee of OpenMP on macOS again?
2. Why was 10.13 chosen as the oldest system instead of 10.14 given the new
push for increased security by
eveloper cannot be verified."
Any suggestions?
Rainer
On 23 Mar 2020, at 15:09, Balamuta, James Joseph
mailto:balam...@illinois.edu>> wrote:
Rainer,
Download the R-devel build from
http://mac.r-project.org<https://urldefense.proofpoint.com/v2/url?u=http-3A__mac.r-2Dproject.org=DwM
Rainer,
Download the R-devel build from http://mac.r-project.org
The build is available under "Universal nightly builds for Mac OS X (10.6+ and
10.9+)" table.
R-devel-el-capitan-sa-x86_64.tar.gz (67Mb)
http://mac.r-project.org/el-capitan/R-devel/R-devel-el-capitan-sa-x86_64.tar.gz
All,
First, macos-rtools isn't an officially sanctioned R project installer. I
created it in the Summer of 2017 to quickly get students and collaborators
setup with minimal effort under a configuration that mirrored CRAN. This was
primarily due to the lack of official installer packages and
Simon,
This is great! Thank you for sharing. I think I noticed a bug with the fixpathR
script: clang4 complier is hard coded.
https://svn.r-project.org/R-dev-web/trunk/QA/Simon/R-build/fixpathR
Instances:
find . -name \*.dylib -or -name \*.so| xargs -n 1 install_name_tool -change
t;), each = 30)
>>>> symptom_post <- c(rnorm(30, mean = 1, sd = 2), rnorm(30, mean = 0, sd =
>>> 1))
>>>> dat1 <- data.frame(group, symptom_post)
>>>>
>>>> fit1 <- brm(bf(symptom_post ~ group, sigma ~ group),
0, sd
=
> > 1))
> > > dat1 <- data.frame(group, symptom_post)
> > >
> > > fit1 <- brm(bf(symptom_post ~ group, sigma ~ group),
> > >data = dat1, family = gaussian())
> > >
> > > Chain 4: Iteration
Greetings and Salutations All,
Great to see the `r-macos-rtools` installer popping up! As the author of it,
please note that it's an unofficial (non-CRAN backed) installer that seeks to
automatically establish the CRAN toolchain in a friendly GUI installer. We
developed it to help out students
Greetings and Salutations,
Note that Xcode Command Line Tools is not the same as Xcode IDE. In fact, only
Xcode CLI Tools are required, which are light-weight compared to the IDE.
Regarding your error, this is symptomatic of an Xcode update tied to an OS
point-release. Note in the session
Greetings and Salutations All,
From the tools page:
"gfortran-6.1.pkg (OS X 10.11+, signed, 64-bit)"
https://cloud.r-project.org/bin/macosx/tools/
How is it 32-bit? The only 32-bit installer is the `gfortran-4.2.3.dmg`, which
hasn't been used since R 3.4.z
Sincerely,
JJB
On 10/10/19,
Erich,
Try to install gfortran with this installer:
https://cran.r-project.org/bin/macosx/tools/gfortran-6.1.pkg
Sincerely,
JJB
On 10/10/19, 10:28 AM, "R-SIG-Mac on behalf of Erich Subscriptions"
wrote:
I am trying to produce a n R environment on clean new Catalina installation
Greetings and Salutations All,
I think `launchd` jobs would properly sign the installer. `launchd` is Apple's
re-envisioning of `cron`.
So, would it be possible to port over the cron job to `launchd`?
Sincerely,
JJB
On 9/20/19, 11:06 PM, "R-SIG-Mac on behalf of Simon Urbanek"
wrote:
Greetings and Salutations Jon,
> Lack of OpenMP support in Apple’s build of Clang is cited as one reason for
> not using it in CRAN builds
From R 3.4.x forward, OpenMP has been enabled in CRAN builds as the toolchain
is using a custom compiler.
You can see this with regard to the work done to
/local/bin/gfortran-4.8".
??? Thanks again.
On 2019-05-07 08:56, Balamuta, James Joseph wrote:
> Greetings and Salutations All,
>
> For R 3.6.x, you want:
>
> https://cran.r-project.org/bin/macosx/tools/clang-7.0.0.pkg
>
Greetings and Salutations All,
For R 3.6.x, you want:
https://cran.r-project.org/bin/macosx/tools/clang-7.0.0.pkg
To let R know about the complier, we need to modify the ~/.Renviron. You may
need to create the file by running in Terminal (Applications -> Utilities):
touch ~/.Renviron
Then,
Roger,
Due to macOS Mojave shift where system headers are located, you'll need to run:
sudo installer -pkg \
/Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg
\
-target /
This installs the headers back to the default location of previous macOS
builds, e.g.
t you may or may not like. Be careful trusting installers
that are not signed by CRAN members. We only supply the binary and any
post-install actions only affect the installed binary not other system
functions nor user directories.
Cheers,
Simon
> On May 17,
to the new install location.
Lastly, you may wish to just maintain an R package install script, c.f.
https://github.com/coatless/toad/blob/master/install-r-packages.R
Sincerely,
JJB
From: Nigel Delaney <nigelfdela...@gmail.com>
Date: Thursday, May 24, 2018 at 2:14 AM
To: "Balamuta, J
Greetings and Salutations Nigel,
I've "augmented" the base R install via an unofficial, e.g. not sanctioned by
CRAN, Rtools build. This can be found here:
https://github.com/coatless/r-macos-rtools
Presently, the latest release only supports the R 3.4.* line:
,
JJB
On 12/18/17, 12:02 AM, "R-SIG-Mac on behalf of Balamuta, James Joseph"
<r-sig-mac-boun...@r-project.org on behalf of balam...@illinois.edu> wrote:
Greetings and Salutations Simon,
Thanks for the response.
> If you want to help, a good star
ibuting constructively.
Cheers,
Simon
> On 7/12/2017, at 6:21 AM, Balamuta, James Joseph <balam...@illinois.edu>
wrote:
>
> Greetings and Salutations All,
>
> First off, I want to say I really appreciate all the work that goes i
Greetings and Salutations Marc,
The “-fopenmp” issue indicates you are using Xcode’s clang compiler that does
_not_ support OpenMP as Apple has yet to enable it in their fork of the llvm
project. As of R 3.4.0, the macOS binary of _R_ uses a custom toolchain that
explicitly supports OpenMP.
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