Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Simon Urbanek
Gilberto, can you provide details, please? (code, file to test etc.) The claim was that this is specific to BigSur which I doubt from your description. Please start a new thread about that at it seem entirely unrelated to the discussion at hand. There was an incompatibility with BigSur, but

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Dr Eberhard W Lisse
I don't get this in 4.0.3 (using the command line version of R) and I don't get this in RStudio 1.3.1093 either. I use the homebrew versions without the R GUI even installed. I am sure more detail will be helpful to the developers. el On 02/12/2020 11:09, Maria-Angeles Casares-de-Cal via

[R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Maria-Angeles Casares-de-Cal via R-SIG-Mac
To those in charge of R for Mac OS X: I have installed the new Big Sur operating system and now I always get a warning similar to: 2020-12-02 09:52:00.647 R[703:11786] Warning: Expected min height of view: () to be less than or equal to 30 but got a height of 32.00. This error will be

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Spencer Graves
$ clang --version Apple clang version 11.0.3 (clang-1103.0.32.59) Target: x86_64-apple-darwin20.1.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin ** "sudo rm -rf /Library/Developer/CommandLineTools" deleted

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Dr Eberhard W Lisse
sudo xcode-select --install el On 2020-12-02 18:52 , Spencer Graves wrote: > $ clang --version > Apple clang version 11.0.3 (clang-1103.0.32.59) > Target: x86_64-apple-darwin20.1.0 > Thread model: posix > InstalledDir: >

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Spencer Graves
Sorry: Typo: I tried "sudo xcode-select --install" and got the same error. This was in Terminal where "The default interactive shell is now zsh." It's not critical, because "I was able to update Xcode from App Store." Thanks for the reply. sg On 2020-12-02 11:48, Dr

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Spencer Graves
I didn't get this with R 4.0.3 under macOS Big Sur 11.0.1 with "time R CMD build" / check. I have not tried it under RStudio. sg On 2020-12-02 05:01, Dr Eberhard W Lisse wrote: I don't get this in 4.0.3 (using the command line version of R) and I don't get this in RStudio

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Dr Eberhard W Lisse
clang --version el On 02/12/2020 16:15, Spencer Graves wrote: > What should I do to "make sure to have installed the latest version of > Apple's development environment, including version 12.0 of the compiler"? > > > Thanks, > Spencer Graves

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Spencer Graves
What should I do to "make sure to have installed the latest version of Apple's development environment, including version 12.0 of the compiler"? Thanks, Spencer Graves On 2020-12-02 07:36, GilbertoCamara wrote: Dear all, I am running R 4.0.3 on BigSur without major

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Bob Rudis
After a bit of git and google poking it seems this is happening to users of MacVim (https://github.com/macvim-dev/macvim/issues/1114) and a few other FOSS projects. In various GH issues (like that one) the issue claims to be resolved by using the latest Xcode & SDK but that’s not likely to be a

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread GilbertoCamara
Dear all, I am running R 4.0.3 on BigSur without major performance issues. I am using RStudio instead of the R GUI. I had to build all spatial packages (rgdal, sf, terra and raster) from source using the Apple clang version 12.0.0 compiler. I also had to build GDAL from scratch, since

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Macdonald, Peter
I think it is a MacBook Pro issue. I’m using a MacBook Pro (15-inch, 2018), R 4.0.3, MacOS 11.01 and it happens whenever R GUI accesses the Touch Bar, with fix() or load() in particular. Unfortunately, I assumed it would go away so I didn’t take careful notes when I first saw, but I

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Gilberto Camara
For me, it worked as follows sudo rm -rf /Library/Developer/CommandLineTools sudo xcode-select —install Best Gilberto > On 2 Dec 2020, at 15:15, Spencer Graves wrote: > > What should I do to "make sure to have installed the latest version > of Apple's development environment,

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Simon Urbanek
Are you chasing a red herring here? Switching tools won help you - in fact they cause more issues since you'd need R-devel version of R to avoid breakage with the most recent tools or extra flags. I'm not sure which issue you are trying to solve. For gdal et al - make sure you install the

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread GilbertoCamara
Dear Simon Unfortunately, the problems reported are real. The rgdal version from CRAN fails to recognise images in JPEG2000 format used by Copernicus Sentinel-2 satellite. I have investigated the matter carefully with Roger Bivand. I tried many combinations on Mac OS Big Sur: (a) rgdal from