wrote:
> I see a lot of references to R CMD on the command line. Can I > assume
> that the R in question is the R executable in Contents > MacOS within
> R.app?
>
> Peter
[...]
--
Dr. Eberhard W. Lisse \ / Obstetrician & Gynaecologist
e...@lisse.na
>
> I did all this R_4.0.4 RC testing after updating to Big Sur 11.2.1.
>
> ____
> From: Dr Eberhard W Lisse
> Sent: Saturday, February 13, 2021 4:44 PM
> To: Duncan Murdoch; R-SIG-Mac; Richard M. Heiberger
> Cc: e...@lisse.na
>
space in a directory name?
put the file in ~/Desktop and see what happens then.
If it is a CSV make it moabsitechem.csv and see what that doesn.
el
—
Sent from Dr Lisse’s iPhone
On 13 Feb 2021, 22:29 +0200, Parkhurst, David F. , wrote:
> I’m still having trouble with read.table, as follows
-select —install
> > I ran (in both cases, in a brand new *R* sessio n)
> >
> > > X11()
> > xcrun: error: invalid active developer path
> > (/Library/Developer/CommandLineTools), missing xcrun at:
> > /Library/Developer/CommandLineTools/usr/bin/xcrun
> >
that has nothing to do with Xquartz but means you need to install the Command
line tools
sudo xcode-select —install
—
Sent from Dr Lisse’s iPhone
On 13 Feb 2021, 06:13 +0200, Richard M. Heiberger , wrote:
> Using the intel R_4.0.4RC on the Mac M1.
>
> Based on your recommendation I reinstalled
I use the homebrew R for the Intel and then install.packages(),
update.package() from scripts and Rstudio’s Tools->.
I don’t have an M1 (yet) but would be interested in seeing how that works on
the M1. Probably this will pull the sources and hence I would be grateful to
read about that.
Aurélie
This has been discussed here on the list recently and I think the
short term fix is to use Rstudio or R from the command line.
I am sure this will sort itself out over time.
el
On 2021-01-05 11:01 , Univ-Rouen wrote:
> Dear all,
> I have change my MacBook Pro since a few months and
t radiant?
> I downloaded the packages thank opened it but in Basics->Prob
> calculator the layout is incomplete. I can only see the graphic, not
> the data over it. You know why?
>
>> Il giorno 3 dic 2020, alle ore 13:41, Dr Eberhard W Lisse
ha scritto:
>>
>>
I’m texting just to have the link to download that version.
> Really thankful,
> Giuseppe Santangelo.
> ___
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
ssue claims to be
>>>>> resolved by
>>>>> using the latest Xcode & SDK but that’s not likely to be a solution
>>>>> for R
>>>>> GUI (which I’m assuming you're using and where this error is coming
>>>>> up).
>>>>>
clang --version
el
On 02/12/2020 16:15, Spencer Graves wrote:
> What should I do to "make sure to have installed the latest version of
> Apple's development environment, including version 12.0 of the compiler"?
>
>
> Thanks,
> Spencer Graves
ot a height of 32.00. This error will be
> logged once per view in violation.
>
> and the computer becomes very slow.
>
> Can I do something to fix it, or will we have to wait for an R update?
>
> Thank you very much for your attention.
>
> Sincerely,
>
&g
It sounds a little as if the R.app is somehow damaged.
What do the commands
ls -ls $(which R)
ls -las $(which Rscript)
issued from a terminal show?
Mine show (abbreviated)
[...] /usr/local/bin/R -> ../Cellar/r/4.0.0_1/bin/R
[...] /usr/local/bin/Rscript ->
48 Jan 13 17:42 a2ping ->
> /usr/local/texlive/2016/bin/x86_64-darwin/a2ping
>
>
> All had "2016". I'm inferring from your comments that if anything
> I do calls any of those 451 operations like "a2ping", I will get "
>
>
> Lisse's "UninstallPKG" might have been more graceful, but I
> couldn't find the key to that padlock, so I used something that seems
> more like boltcutters instead -- and it worked.
>
>
> Thanks again,
> Spencer Graves
>
>
> On 2
hat via several levels of indirection end up somewhere in
> /usr/local/texlive). However, old installs may still have binaries or
> links in /usr/local/bin. I would guess that a simple
>
> sudo rm /usr/local/bin/pdflatex
>
> could work (possibly remove some other *tex progra
Ah, yes,
brew install coreutils
:-)-O
Existing accounts using bash remain under bash when upgrading to
Catalina. And bash remains available so all bash script will continue
to run :-)-O
el
On 13/05/2020 15:44, Marc Schwartz wrote:
> Hi,
>
> I will stand to be corrected, but from
:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/usr/local/git/bin
>
>
> I do find "/Library/TeX/texbin/pdflatex" on my hard drive, but "which
> pdflatex"
For all it is worth,
homebrew upgraded R to 4.0.0 on Catalina and I did notice that homebrew
asked for an XCode Command Line Tools upgrade
I then sourced as usual my package.R which installs the ones I use, and
it did install a number of packages from source (which I assusme is
becasue they
g it ?
>
>
> Thank you very much for your help,
>
> Best wishes,
>
>
> JB
>
>
>
> _______
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
--
Dr. Eberhard W. L
Rainer
Put
function tlcockpit
{
case "$(java -version 2>&1 | head -1)" in
*"1.8"*) jar="tlcockpit-jdk8.jar" ;;
*) jar="tlcockpit.jar" ;;
esac
exec java -jar $(kpsewhich --progname="tlcockpit" --format=texmfscripts
"$jar") 2>&1 >/dev/null &
}
into ~/.aliases or
Rainer,
I am definitively interested.
But, as a disclaimer, I am an elderly Gynecologist only dabbling in R
and a little in Perl :-)-O.
el
On 02/04/2020 12:43, Rainer M Krug wrote:
>
>
>> On 2 Apr 2020, at 12:17, Duncan Murdoch
>> wrote:
>>
>> On 02/04/2020
…, which can
> cause inconsistencies.
>
> The installation is done without requiring root privileges, which is a
> big advantage (as I see it).
>
>
>
> Cheers,
>
> Rainer
[...]
--
Dr. Eberhard W. Lisse \ / Obstetrician & Gynaecologist
e...@liss
out how to make Homebrew pre/post
install scripts to automate this :-)-O
And, for the record, other than that, I can only recall one serious
issue, when the openblas library got lost recently which was however
fixed quite quickly.
greetings, el
On 02/04/2020 10:17, Dr Eberhard W Lisse wrote
I do same, including Rstudio (Cask).
Once in a while after major updates I need to reinstall all my extra
packages, so I have written me a little script along the lines of
#!/usr/local/bin/Rscript
local({
r <- getOption("repos")
r["CRAN"] <-
Ligges wrote:
>
>
> On 12.02.2020 10:51, Dr Eberhard W Lisse wrote:
[...]
> For myself, I would not use RStudio as it does what you describe: Lots
> of things I do not want to be done. So I typically never give advise
> which editor or environment to use, as that is a matter o
causing install.packages() to fail, which forces installation
> from source:
>
[...]
>
> Have I made som mistake or is this a real problem?
>
> Many thanks for any help.
>
> Best regards,
>
> Joel Jacobson
[...]
--
Dr. Eberhard W. Lisse \ / Obstetrici
For me it usually had to resort to the latter when there were
connectivity issues (more common in Namibia than in Potsdam :-)-O).
And maybe once or twice when I wanted to try something special.
It also has a 'cask' option with which it installs apps so I do
brew install r
brew cask install
les for R via "make" - after them it breaks
> the installation ☹
[...]
--
Dr. Eberhard W. Lisse \ / Obstetrician & Gynaecologist
e...@lisse.na / * | Telephone: +264 81 124 6733 (cell)
PO Box 8421
have a nice day…..
>
>
>
> Herzlichst grüßt Sie das HPC - Team
>
>
>
>
>
>
>
> Matthias Krawutschke
[...]
--
Dr. Eberhard W. Lisse \ / Obstetrician & Gynaecologist
e...@lisse.na
>
> Are there plans to notarize these builds of R? (can we be helpful in
> making that happen?)
>
> Best,
> Kevin
>
> ___
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listin
Indeed. Thanks.
el
Sent from Dr Lisse's iPad mini 4
On 29 Apr 2019, 01:48 +0200, Bert Gunter , wrote:
> ?installed.packages
>
> (Sometimes trying the obvious works)
>
> Bert Gunter
>
> "The trouble with having an open mind is that people keep coming along and
> sticking things into it."
> --
Thanks,
>
> Marc
[...]
--
Dr. Eberhard W. Lisse / Obstetrician & Gynaecologist (Saar)
e...@lisse.na/ * | Telephone: +264 81 124 6733 (cell)
PO Box 8421 /
Bachbrecht, Namibia ;/
___
R-SIG-Mac ma
on
>
>
>> On Mar 14, 2019, at 8:43 AM, Dr Eberhard W Lisse wrote:
>>
>> Try from the commandline
>>
>> sudo spctl --master-disable
>>
>> and then install the package
>>
>> el
___
R-SIG-Mac mailing list
R-SIG-Mac@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Try from the commandline
sudo spctl --master-disable
and then install the package
el
Sent from Dr Lisse's iPad mini 4
On 14 Mar 2019, 21:18 +0900, Marc Schwartz via R-SIG-Mac
, wrote:
> Hi,
>
> I just tried to install the R 3.5.3 macOS binary from CRAN.
>
> The SHA hash matches what is on
On my Mojave iMac
commandArgs()
returns
on RStudio
[1] "RStudio" "--interactive"
on Mac GUI
[1] "R" "--no-save" "--no-restore-data" "--gui=aqua"
and on R command line
[1] "/Library/Frameworks/R.framework/Resources/bin/exec/R"
so maybe test for that?
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