Re: [R-SIG-Mac] Installing packages from source for all installed sub-architectures

-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred

[R-SIG-Mac] R-devel binaries on R for Mac OS X Developer's Page are lagging 6 weeks behind

Hi, I noticed that the latest R-devel binaries available at "R for Mac OS X Developer's Page" are for R r71594 (from 2016-10-26): https://r.research.att.com/#nightly I tried both, the tarball (R-devel-mavericks-sa-x86_64.tar.gz) and .pkg (R-devel-mavericks.pkg). Thanks, H. -- H

[R-SIG-Mac] El Capitan binaries of CRAN packages and R

... 2) It looks like there has been no successful El Capitan build of R since March 21st on the "R for Mac OS X Developer's Page": https://r.research.att.com/ Hopefully these issues can be taken care of soon. Thanks, H. -- Hervé Pagès Program in Computational Biology Division

[R-SIG-Mac] slow compiling times with clang 4.0.0 (but faster code?)

t the cost of longer compilation times? Cheers, H. -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax:

Re: [R-SIG-Mac] R is taking too long to load

-q8QiizXtbiWc-kj9qtPO2h0=cSQVI4BrFUKhUyo5ZPrQMQOwu-ZSCMWpxh5IJ8y9L6s= -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206

Re: [R-SIG-Mac] Installing CRAN binary packages with R 4.0 installed from source crashes R

as referring to was .Platform$pkgType [1] "mac.binary" Cheers, Simon On 2/04/2020, at 10:20 PM, Hervé Pagès wrote: On 4/2/20 02:05, Prof Brian Ripley wrote: On 02/04/2020 09:34, Simon Urbanek wrote: Hervé, "both" is a fairly recent addition and my guess wou

Re: [R-SIG-Mac] contrib/3.5 and contrib/3.6 empty

ac@r-project.org https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac=DwIFAg=eRAMFD45gAfqt84VtBcfhQ=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA=9lcm1EU4F0AsqywEcz1K1ZH7vd9AxFLF8bVP7Prelgo=uviIzX5RyMCRA1GpWLhYyjcNP_viq4A_cNy2pjEStcg= -- Hervé Pagès Pr

Re: [R-SIG-Mac] Please test R 4.0.0 pre-releases!

-project.org https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac=DwIFAg=eRAMFD45gAfqt84VtBcfhQ=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA=-PNBcsZhHb1MLy6fZakmLP6WDLMwL-VigJVzeFtPxOI=ubqivtpb1OZ2I0MEbVvGlGDK-tfti3DPtIv4LQ-Ks6A= -- Hervé Pagès Program

Re: [R-SIG-Mac] Please test R 4.0.0 pre-releases!

I see bin/macosx/contrib/4.0/ now (e.g. https://cran.r-project.org/bin/macosx/contrib/4.0/). Thanks! H. On 4/1/20 00:37, Simon Urbanek wrote: Hervé, On 1/04/2020, at 6:19 PM, Hervé Pagès wrote: Thanks Simon. A couple of days ago we've started to use the R 4.0.0 alpha build from https

Re: [R-SIG-Mac] Transitioning from Mac to LInux?

repository's packages under Linux? -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax:(206) 667

[R-SIG-Mac] Installing CRAN binary packages with R 4.0 installed from source crashes R

/Users/biocbuild/bbs-3.11-bioc/R/lib/libRblas.dylib LAPACK: /Users/biocbuild/bbs-3.11-bioc/R/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded vi

Re: [R-SIG-Mac] Installing CRAN binary packages with R 4.0 installed from source crashes R

quot;both". Anyway knowing the defaults is interesting but only orthogonal to the discussion. H. Cheers, Simon On 2/04/2020, at 7:47 PM, Hervé Pagès wrote: Hi Simon, After installing R 4.0 alpha from source on a macOS Mojave system, R won't let me use type="both" to ins

Re: [R-SIG-Mac] Installing CRAN binary packages with R 4.0 installed from source crashes R

impossible unless we introduce some extra identification of the binaries. So, yes, if you compile R from sources yourself it is not guaranteed to be compatible with CRAN package binaries. Those are only built and tested with the CRAN R binary. Cheers, Simon On 2/04/2020, at 7:47 PM, Hervé P

Re: [R-SIG-Mac] Installing CRAN binary packages with R 4.0 installed from source crashes R

[1] compiler_4.0.0 H. On 4/1/20 23:47, Hervé Pagès wrote: Hi Simon, After installing R 4.0 alpha from source on a macOS Mojave system, R won't let me use type="both" to install CRAN packages. I get:   Error in install.packages("rJava", type = "both", repos = "http

Re: [R-SIG-Mac] Homebrew

FD45gAfqt84VtBcfhQ=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA=uDuycJflTWje5wqLzrbP7zBZojiWq6DmyxGuwakypr0=-Kazp7RDPhXbnKvMu3vyOfRSE7ZQBHDCH9Vy6MeGssA= -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Bo

Re: [R-SIG-Mac] fatal error: 'stdio.h' file not found

W0WYiZvSXAJJKaaPhzWA=MF1GsseSwZpmjo7qspeJtAlyY9nDQ_XZnJGweoVjCfE=oFtPJDZ3gSkizBSLFUqqZ2SGa402cZZHDFxpHmk5rNM= -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhu

[R-SIG-Mac] Mac binary of rJava for R 4.1?

The index contains an entry for rJava. But no rJava binary here: https://cran.r-project.org/bin/macosx/contrib/4.1/ That being said, when can we expect to see a Mac binary of rJava for R 4.1? Thanks, H. -- Hervé Pagès Bioconductor Core Team hpages.on.git...@gmail.com