Check this:

Ives, A. R., and T. Garland, Jr. 2010. Phylogenetic logistic regression for 
binary dependent variables. Systematic Biology 59:9-26.

Cheers,
Ted

Theodore Garland, Jr.
Professor
Department of Biology
University of California, Riverside
Riverside, CA 92521
Office Phone:  (951) 827-3524
Facsimile:  (951) 827-4286 = Dept. office (not confidential)
Email:  tgarl...@ucr.edu
http://www.biology.ucr.edu/people/faculty/Garland.html
http://scholar.google.com/citations?hl=en&user=iSSbrhwAAAAJ

Experimental Evolution: Concepts, Methods, and Applications of Selection 
Experiments. 2009.
Edited by Theodore Garland, Jr. and Michael R. Rose
http://www.ucpress.edu/book.php?isbn=9780520261808
(PDFs of chapters are available from me or from the individual authors)

________________________________________
From: r-sig-phylo-boun...@r-project.org [r-sig-phylo-boun...@r-project.org] on 
behalf of Jordan Golubov [gfjor...@correo.xoc.uam.mx]
Sent: Wednesday, August 29, 2012 12:23 PM
To: r-sig-phylo@r-project.org
Subject: [R-sig-phylo] testing binomial characters

Dear All,

I am trying to test whether a binomial character state (photoblastic
seeds vs indifferent responsive seeds) in species of Cactaceae is
affected by seed mass or length. 1) Is there a meas of identifying
phylogenetic signal for a two character state? 2) Is there a way of
testing what factor (both continuous seed mass/length) affects
photoblastic rersponse, maybe a GLMM?

Thanks

--
Dr. Jordan Golubov
Lab. Ecologia, Sistematica y FisiologiaVegetal
Departamento El Hombre y Su Ambiente
Universidad Autonoma Metropolitana Xochimilco
Calz. del Hueso 1100, Col. Villa Quietud, Coyoacán
04960, México D. F. México


"It is the mark of an educated mind to be able to entertain a thought
without accepting it".
>Aristotle

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