Hi Francisca,
The scale of the branch lengths of the chronogram should be defined by
the calibration points provided to chronos(). Maybe you used the default
(age = 1 at the root) so that the branch lengths are (logically) all
less than one.
Best,
Emmanuel
Le 06/05/2015 15:40, Francisca Cunha Almeida a écrit :
Dear all,
I am trying to make ultrametric trees from a ML tree. The chronos function
runs all right, but the scale of the calibrated tree I get does not reflect
the calibration I used; instead it seems to be still in substitutions per
site. Is it what I should expect?
Thanks in advance,
Francisca
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