Re: [R-sig-phylo] Tree plotting (and maybe others) are borked when a node label is '0'

On 4 Jan 2017, at 16:03, Emmanuel Paradis wrote: > This is a known feature of read.nexus(), see ape's FAQ: > > http://ape-package.ird.fr/ape_faq.html#Bayestrees > > This explains how to fix the problem. Oh, sorry. I should have read the FAQ before posting. If you are thinking about adding a

Re: [R-sig-phylo] Tree plotting (and maybe others) are borked when a node label is '0'

Hi, This is a known feature of read.nexus(), see ape's FAQ: http://ape-package.ird.fr/ape_faq.html#Bayestrees This explains how to fix the problem. Best, Emmanuel Le 04/01/2017 à 14:46, Yan Wong a écrit : If I create a test.nex file as follows: #NEXUS BEGIN TREES; TRANSLATE 0 0, 1 1, 2 2,

Re: [R-sig-phylo] read.FASTA accept connection

This is great! This can also read other types of connection. I made a few modifications so that the function can read remote files through HTTPS or FTPS and this fixes the crash when reading empty files (or compressed files without specifying a connection). For this fix, it is needed to recompi

[R-sig-phylo] Tree plotting (and maybe others) are borked when a node label is '0'

If I create a test.nex file as follows: #NEXUS BEGIN TREES; TRANSLATE 0 0, 1 1, 2 2, 3 3, 4 4, 5 5, 6 6, 7 7; TREE test = (((3,5),(4,6)),(0,(2,(1,7; END; And then attempt to do > plot(read.nexus("test.nex")) I get Error in plot.phylo(m) : tree badly conformed; cannot plot. Check the edge