If I create a test.nex file as follows: #NEXUS BEGIN TREES; TRANSLATE 0 0, 1 1, 2 2, 3 3, 4 4, 5 5, 6 6, 7 7; TREE test = (((3,5),(4,6)),(0,(2,(1,7)))); END;
And then attempt to do > plot(read.nexus("test.nex")) I get Error in plot.phylo(m) : tree badly conformed; cannot plot. Check the edge matrix. It works fine if I start indexing tips at 1. Yan _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/